FvH4_5g31860

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
22979398 .. 22983054
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31860.t1

Sequence Viewer

Length: 1890 bp
ATGAACCGAGCTTCTGTTTACTCTCCCTATCAAACCAGAATACCAATTTTTAGCATCAATTTTGTATCAACAATCTCAACTCTCTCCTCCTCTTCCTCTTCTCTACAGACCATCCCGGACTCTCACTCCACATCAATTTCAAACCCCCTTTACCGGTTTCTCCCCCAAACCCAAAACCCCAACAATATAGTCAATATCATCTGCTCAGCCCTGAAGCAACAAAGCCACCACCATCTTTCCCATCTTCAAAATGACCTCAAACCCCTTCTTCCCCATCTAGGTGGTCAAGAAATCTCAAGGGTTCTGCTCAGGTTCCAATCCGAGTACTCCTCAGCTCTTATTTTCTTCAACTGGGTCAAGACTGGTTTGGGCCTCAGGCTCACCACCCAGAACTATTGCATTGCTCTTCATATTCTAGCTTGTTCTCAAAAGTTTCCCCAGGCTATGACATTGTTATGTGAATTGATACAGCTGGTTAGGGATGGAGATGCTGCACAGAAAGATGACATTTTTCATAGTTTGGTTGTTTGTGCTGAAGATTGTAACTGGGATCCAGTTATCTTTGATATGCTCATCAAGGCTTATGTGAAAGCAGGTATGATTAGAGATGGTTTTATCTGTTTTAAGCAGACATTAGAAGTTGGATTTGTTCTGAGTGTGATCGCTTGCAATTGTCTTATGAATGGGTTAGCGAGGTTGAATTGTTTAGATCAGTGTTGGGAGGTATATGAAGATATGGGAAGGATTGGAATACACCCAAATGTGTATACTTTTAATATTTTGACTAATGTTTTGTGCAAGGATGGAGATGTTGAGAAAGTGAATGCTTTTTTGGATAAAATGGAAGAGGAAGGATTTGATCCTGATATCGTAACGTATAATACTCTGATTAGTAGCTATTGTAGGAAAGGAAGGTTAGGAGATGCGTTTTATTTGTATAAGATCATGTTTAGGAGGGGGGTTATGCCGGATTTAGTTTCGTACACTGCCTTGATGCACGGTCTTTGTAAACAAGGGAATGTGAGAGAGGCTCATCAGCTTTTTCATCGGATGGTTCATAGAGGGTATTATCCAGACATTGTGTCATATAATGCTCTTATTAATGGTTATTGCAATGAGGGGAAGCTGCCGGAGTGCAAATCATTGTTGTATGAGATGATAAAAAATGGGGTTTATCCAGATGATTTCACTTGTAGGGTAGTCATCGAAGGATATGGCAAAGAAGGCAAGCTGCTATCTGCAATGAATTTCATAGTGGAGCTTCAAAAATTTCAAGTGTCTATTTCTCGTCATATTTATGATTATCTCATAGTTGCATTGTGTCAAGAAAATCGGCCGTTTGCAGCTAAAAGTCTATTAGAAAGAAGTTCTCAAGACGGTTATTTGCCTGATCTGGATATCTATAACAAATTAATTGAGTCCCTCTGCCAGAGCAATAATGTGACCAAGGCACAGGTATTGAAAGCCGAGATGGTTTGTAAGAACATCAAACCCAATCTTATCACATATAAAGCTCTAATAAACTGTTTATGTCTAATAAACAGAACAGTGGAAGGTGATTCCTTACTGAAAGAGATGGTTGAATCTGGTTTGCCGCCTGATTCAGAAATCTGCAGGTCATTGATAAAGGGTTACTGCAAAGAAAGGGATGTTGCTAAAGCAGAATCATTGTTAAGGTTCTTTGCCACAGAATTTCAGGTTTTTGATTCTGAAAGTTACAATGAACTTATCAAAATTTTCTGTGAGGATGGTGATATGACTAAGTTGTTGGAGTTACAAGAGAGGATGATGAAAGTGGGTTTTTCACCAAATAGCCTTACATTTAAGTATGCCGTCCATGGATTATGGAAAACTACCAGACAAGAGAAAGATAATCTTCTTCTGGATTAA

Protein Analysis

630

Amino Acids

71.64

Weight (kDa)

6.33

Isoelectric Point (pI)

39.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 219 - 267 2.4e-13 PPR repeat family
PPR_long PF17177 233 - 339 1.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 242 - 300 8.3e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 250 - 282 2e-07 PPR repeat
PPR_2 PF13041 263 - 297 1.5e-07 PPR repeat family
PPR_3 PF13812 278 - 325 6e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 285 - 316 2.8e-12 PPR repeat
PPR_2 PF13041 288 - 337 8.6e-19 PPR repeat family
PPR PF01535 291 - 321 3.8e-08 PPR repeat
PPR_3 PF13812 316 - 372 2e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 319 - 352 2.6e-11 PPR repeat
PPR_2 PF13041 323 - 361 4.7e-11 PPR repeat family
PPR PF01535 326 - 355 3.1e-08 PPR repeat
PPR_1 PF12854 354 - 386 1.1e-07 PPR repeat
PPR_2 PF13041 358 - 406 2.8e-14 PPR repeat family
PPR PF01535 361 - 391 3.2e-09 PPR repeat
PPR_2 PF13041 463 - 511 1.1e-11 PPR repeat family
PPR_2 PF13041 570 - 615 8e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40400 AT5G40400
fragaria_vesca FvH4_5g31860
malus_domestica MD09G1028300.v1.1
prunus_persica Prupe.3G290200_v2.0.a1
pyrus_communis pycom111g02230
rosa_chinensis RchiOBHm_Chr2g0173011
rosa_laevigata RLG00000022149
rosa_multiflora Rmu_sc0012743.1_g000003
rosa_roxburghii Rroxscaffold_2G00079320
rosa_samantha Rh2AG641500 Rh2AG644000 Rh2BG654800 Rh2CG620200 Rh2DG668400
rosa_wichuraiana Rw2G052920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 584, 1605
AccI GTMKAC 1 cut(s) 767
AciI CCGC 1 cut(s) 1595
AclWI GGATC 3 cut(s) 545, 558, 854
AcoI YGGCCR 1 cut(s) 1334
AcsI RAATTY 4 cut(s) 1246, 1268, 1691, 1734
AcuI CTGAAG 2 cut(s) 233, 555
AfaI GTAC 2 cut(s) 326, 983
AfiI CCNNNNNNNGG 2 cut(s) 153, 278
AgeI ACCGGT 1 cut(s) 153
AgsI TTSAA 8 cut(s) 141, 248, 349, 700, 1265, 1274, 1462, 1583
AhdI GACNNNNNGTC 1 cut(s) 1081
AjnI CCWGG 1 cut(s) 438
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AlwI GGATC 3 cut(s) 545, 558, 854
AoxI GGCC 2 cut(s) 370, 1334
ApeKI GCWGC 4 cut(s) 491, 1126, 1231, 1343
ApoI RAATTY 4 cut(s) 1246, 1268, 1691, 1734
ArsI GACNNNNNNTTYG 2 cut(s) 775, 807
AseI ATTAAT 2 cut(s) 1101, 1412
AsiGI ACCGGT 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 370
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 373, 1568, 1763, 1797
AxyI CCTNAGG 1 cut(s) 374
BamHI GGATCC 1 cut(s) 550
BbvCI CCTCAGC 1 cut(s) 331
BbvI GCAGC 4 cut(s) 478, 1113, 1218, 1355
BceAI ACGGC 2 cut(s) 1321, 1817
BciT130I CCWGG 1 cut(s) 440
BcnI CCSGG 1 cut(s) 116
BfaI CTAG 2 cut(s) 278, 416
BfmI CTRYAG 2 cut(s) 104, 1612
BfuAI ACCTGC 2 cut(s) 584, 1605
BisI GCNGC 5 cut(s) 492, 1127, 1232, 1344, 1595
BlpI GCTNAGC 1 cut(s) 205
BlsI GCNGC 5 cut(s) 493, 1128, 1233, 1345, 1596
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 2 cut(s) 116, 440
BmeRI GACNNNNNGTC 1 cut(s) 1081
BmgT120I GGNCC 1 cut(s) 370
BmiI GGNNCC 2 cut(s) 314, 552
BmrFI CCNGG 2 cut(s) 116, 440
BmrI ACTGGG 2 cut(s) 361, 556
BmsI GCATC 4 cut(s) 63, 478, 913, 984
BmuI ACTGGG 2 cut(s) 361, 556
BplI GAGNNNNNCTC 4 cut(s) 314, 346, 1015, 1047
Bpu10I CCTNAGC 2 cut(s) 308, 331
Bpu1102I GCTNAGC 1 cut(s) 205
BpuEI CTTGAG 2 cut(s) 280, 1356
BpuMI CCSGG 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 438, 1446, 1837
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 278
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 4 cut(s) 356, 367, 551, 554
Bse21I CCTNAGG 1 cut(s) 374
Bse3DI GCAATG 3 cut(s) 399, 1120, 1248
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 438, 1446, 1837
BseGI GGATG 7 cut(s) 111, 487, 808, 1056, 1654, 1753, 1791
BseLI CCNNNNNNNGG 2 cut(s) 153, 278
BseMI GCAATG 3 cut(s) 399, 1120, 1248
BseMII CTCAG 5 cut(s) 219, 322, 345, 388, 644
BseNI ACTGG 4 cut(s) 356, 367, 551, 554
BseRI GAGGAG 3 cut(s) 76, 79, 319
BseX3I CGGCCG 1 cut(s) 1334
BseXI GCAGC 4 cut(s) 478, 1113, 1218, 1355
BsgI GTGCAG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 1337
BshFI GGCC 2 cut(s) 372, 1336
BshTI ACCGGT 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 1337
BsiSI CCGG 4 cut(s) 116, 154, 968, 1130
BslFI GGGAC 1 cut(s) 1405
BslI CCNNNNNNNGG 2 cut(s) 153, 278
BsmFI GGGAC 1 cut(s) 1405
BsmI GAATGC 1 cut(s) 829
BsnI GGCC 2 cut(s) 372, 1336
Bsp143I GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
Bsp1720I GCTNAGC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 1837
BspACI CCGC 1 cut(s) 1595
BspANI GGCC 2 cut(s) 372, 1336
BspCNI CTCAG 5 cut(s) 218, 321, 344, 387, 645
BspLI GGNNCC 2 cut(s) 314, 552
BspMAI CTGCAG 1 cut(s) 1616
BspMI ACCTGC 2 cut(s) 584, 1605
BspPI GGATC 3 cut(s) 545, 558, 854
BspQI GCTCTTC 1 cut(s) 411
BsrDI GCAATG 3 cut(s) 399, 1120, 1248
BsrFI RCCGGY 1 cut(s) 153
BsrI ACTGG 4 cut(s) 356, 367, 551, 554
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 3 cut(s) 438, 1446, 1837
BssMI GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
BssNAI GTATAC 1 cut(s) 768
BssT1I CCWWGG 2 cut(s) 1446, 1837
Bst1107I GTATAC 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 4 cut(s) 1001, 1379, 1526, 1549
Bst6I CTCTTC 4 cut(s) 97, 103, 411, 840
BstC8I GCNNGC 2 cut(s) 667, 1229
BstDEI CTNAG 6 cut(s) 205, 308, 331, 374, 653, 1761
BstDSI CCRYGG 1 cut(s) 1837
BstF5I GGATG 7 cut(s) 111, 487, 808, 1056, 1654, 1753, 1791
BstKTI GATC 6 cut(s) 553, 663, 712, 862, 945, 1393
BstMBI GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
BstMCI CGRYCG 1 cut(s) 1337
BstMWI GCNNNNNNNGC 1 cut(s) 1224
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 2 cut(s) 114, 438
BstSFI CTRYAG 2 cut(s) 104, 1612
BstV1I GCAGC 4 cut(s) 478, 1113, 1218, 1355
BstX2I RGATCY 1 cut(s) 550
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 550
BstZ17I GTATAC 1 cut(s) 768
BstZI CGGCCG 1 cut(s) 1334
Bsu36I CCTNAGG 1 cut(s) 374
BsuRI GGCC 2 cut(s) 372, 1336
BtgI CCRYGG 1 cut(s) 1837
BtsCI GGATG 7 cut(s) 111, 487, 808, 1056, 1654, 1753, 1791
BtsI GCAGTG 1 cut(s) 984
BtsIMutI CAGTG 3 cut(s) 719, 984, 1554
BveI ACCTGC 2 cut(s) 584, 1605
Cac8I GCNNGC 2 cut(s) 667, 1229
Cfr10I RCCGGY 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 370
Csp6I GTAC 2 cut(s) 325, 982
CspAI ACCGGT 1 cut(s) 153
CviAII CATG 2 cut(s) 946, 1838
CviQI GTAC 2 cut(s) 325, 982
DdeI CTNAG 6 cut(s) 205, 308, 331, 374, 653, 1761
DpnI GATC 6 cut(s) 552, 662, 711, 861, 944, 1392
DpnII GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
DriI GACNNNNNGTC 1 cut(s) 1081
EaeI YGGCCR 1 cut(s) 1334
EagI CGGCCG 1 cut(s) 1334
Eam1104I CTCTTC 4 cut(s) 97, 103, 411, 840
Eam1105I GACNNNNNGTC 1 cut(s) 1081
EarI CTCTTC 4 cut(s) 97, 103, 411, 840
EclXI CGGCCG 1 cut(s) 1334
Eco130I CCWWGG 2 cut(s) 1446, 1837
Eco32I GATATC 2 cut(s) 868, 1399
Eco52I CGGCCG 1 cut(s) 1334
Eco57I CTGAAG 2 cut(s) 233, 555
Eco81I CCTNAGG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 438
EcoRV GATATC 2 cut(s) 868, 1399
EcoT14I CCWWGG 2 cut(s) 1446, 1837
ErhI CCWWGG 2 cut(s) 1446, 1837
FaeI CATG 2 cut(s) 949, 1841
FalI AAGNNNNNCTT 1 cut(s) 1860
FaqI GGGAC 1 cut(s) 1405
FatI CATG 2 cut(s) 945, 1837
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 5 cut(s) 492, 1127, 1232, 1344, 1595
FokI GGATG 7 cut(s) 98, 494, 815, 1063, 1661, 1760, 1798
Fsp4HI GCNGC 5 cut(s) 492, 1127, 1232, 1344, 1595
FspBI CTAG 2 cut(s) 278, 416
GluI GCNGC 5 cut(s) 492, 1127, 1232, 1344, 1595
HaeIII GGCC 2 cut(s) 372, 1336
HapII CCGG 4 cut(s) 116, 154, 968, 1130
Hin1II CATG 2 cut(s) 949, 1841
HinfI GANTC 7 cut(s) 119, 1418, 1559, 1583, 1601, 1664, 1706
HpaII CCGG 4 cut(s) 116, 154, 968, 1130
HphI GGTGA 4 cut(s) 373, 1568, 1763, 1797
Hpy166II GTNNAC 4 cut(s) 19, 768, 984, 1010
Hpy188I TCNGA 6 cut(s) 322, 654, 888, 1050, 1606, 1711
Hpy188III TCNNGA 9 cut(s) 287, 358, 863, 1073, 1178, 1325, 1373, 1394, 1883
Hpy8I GTNNAC 4 cut(s) 19, 768, 984, 1010
HpyAV CCTTC 7 cut(s) 275, 735, 845, 906, 1202, 1217, 1547
HpyCH4III ACNGT 4 cut(s) 1001, 1379, 1526, 1549
HpyCH4IV ACGT 1 cut(s) 875
HpyF10VI GCNNNNNNNGC 1 cut(s) 1224
HpyF3I CTNAG 6 cut(s) 205, 308, 331, 374, 653, 1761
HpySE526I ACGT 1 cut(s) 875
Hsp92II CATG 2 cut(s) 949, 1841
Kzo9I GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 1 cut(s) 1258
Lsp1109I GCAGC 4 cut(s) 478, 1113, 1218, 1355
LweI GCATC 4 cut(s) 63, 478, 913, 984
MaeI CTAG 2 cut(s) 278, 416
MaeII ACGT 1 cut(s) 875
MaeIII GTNAC 6 cut(s) 542, 871, 1441, 1631, 1715, 1773
MalI GATC 6 cut(s) 552, 662, 711, 861, 944, 1392
MboI GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
MfeI CAATTG 1 cut(s) 670
MflI RGATCY 1 cut(s) 550
MlyI GAGTC 2 cut(s) 113, 1427
MmeI TCCRAC 2 cut(s) 622, 1749
MseI TTAA 7 cut(s) 624, 774, 1101, 1412, 1673, 1824, 1888
MslI CAYNNNNRTG 4 cut(s) 279, 454, 759, 1296
MspA1I CMGCKG 1 cut(s) 472
MspI CCGG 4 cut(s) 116, 154, 968, 1130
MspR9I CCNGG 2 cut(s) 116, 440
MunI CAATTG 1 cut(s) 670
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 1 cut(s) 440
MwoI GCNNNNNNNGC 1 cut(s) 1224
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 1837
NdeII GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
NlaIII CATG 2 cut(s) 949, 1841
NlaIV GGNNCC 2 cut(s) 314, 552
NmeAIII GCCGAG 1 cut(s) 1492
NmuCI GTSAC 1 cut(s) 1441
PciSI GCTCTTC 1 cut(s) 411
PctI GAATGC 1 cut(s) 829
PfeI GAWTC 5 cut(s) 1559, 1583, 1601, 1664, 1706
PfoI TCCNGGA 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 153
PkrI GCNGC 5 cut(s) 493, 1128, 1233, 1345, 1596
PleI GAGTC 2 cut(s) 113, 1426
PpsI GAGTC 2 cut(s) 113, 1426
PshBI ATTAAT 2 cut(s) 1101, 1412
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 2 cut(s) 314, 552
PspPI GGNCC 1 cut(s) 370
PstI CTGCAG 1 cut(s) 1616
PsuI RGATCY 1 cut(s) 550
PvuII CAGCTG 1 cut(s) 472
RsaI GTAC 2 cut(s) 326, 983
RsaNI GTAC 2 cut(s) 325, 982
RseI CAYNNNNRTG 4 cut(s) 279, 454, 759, 1296
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 7 cut(s) 624, 774, 1101, 1412, 1673, 1824, 1888
SatI GCNGC 5 cut(s) 492, 1127, 1232, 1344, 1595
Sau3AI GATC 6 cut(s) 550, 660, 709, 859, 942, 1390
Sau96I GGNCC 1 cut(s) 370
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 2 cut(s) 113, 1427
ScrFI CCNGG 2 cut(s) 116, 440
SfaNI GCATC 4 cut(s) 63, 478, 913, 984
SfcI CTRYAG 2 cut(s) 104, 1612
SmiMI CAYNNNNRTG 4 cut(s) 279, 454, 759, 1296
SmlI CTYRAG 2 cut(s) 295, 1371
SmoI CTYRAG 2 cut(s) 295, 1371
SsiI CCGC 1 cut(s) 1595
SspI AATATT 1 cut(s) 778
SspMI CTAG 2 cut(s) 278, 416
StyD4I CCNGG 2 cut(s) 114, 438
StyI CCWWGG 2 cut(s) 1446, 1837
TaaI ACNGT 4 cut(s) 1001, 1379, 1526, 1549
TaiI ACGT 1 cut(s) 878
TaqI TCGA 1 cut(s) 1206
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 1597
TfiI GAWTC 5 cut(s) 1559, 1583, 1601, 1664, 1706
Tru1I TTAA 7 cut(s) 624, 774, 1101, 1412, 1673, 1824, 1888
Tru9I TTAA 7 cut(s) 624, 774, 1101, 1412, 1673, 1824, 1888
TscAI CASTG 3 cut(s) 719, 991, 1554
TseFI GTSAC 1 cut(s) 1441
TseI GCWGC 4 cut(s) 491, 1126, 1231, 1343
Tsp45I GTSAC 1 cut(s) 1441
TspRI CASTG 3 cut(s) 719, 991, 1554
VspI ATTAAT 2 cut(s) 1101, 1412
XapI RAATTY 4 cut(s) 1246, 1268, 1691, 1734
XmiI GTMKAC 1 cut(s) 767
XspI CTAG 2 cut(s) 278, 416
ZrmI AGTACT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.