Rroxscaffold_2G00079320

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
2360118 .. 2362512
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00079320.1

Sequence Viewer

Length: 1893 bp
ATGAATCGAGCTTCACTCTACTCTCCCTGTCAAACCAAAAACCCATTCTTTAACATCTGTTTCATACTAAAAATCTCAACTCTCTCTTCTTCTTCTTCTTCTCTACAGACCATCCCAGACTCTCCCTCCACATCAATCTCAAACCCCCTTTACCATTTTCTCCCCCAAACCCAAAACCCCAACAACATAGTCAATCTCATCTGCTCAGCCCTCAAGCAACCACAGACCCACCACCATCTTTCCCATCTCCAAAACCACCTCAAACCCCTTCTTCCCCATCTGGGTGGTCAACAAATCTCAAGGGTTCTCCTCAGGTTCCAATCTGATCACTCCTCAGCTCTTGTTTTCTTCAACTGGGTCAAGCATGGTTTGGGCCTCAGACCCACCACCCAGAACTATTGCATTGCTCTTCATATATTAGCTTGCTCTAAAAAGTTTCCCCAGGCTATGAAATTGTTGTGTGAATTGATAGAGCTGGTTAGGGATGTGGGTGCGTCATCCAAAGATGACATTTTTCATAGTTTGGTTGTTTGTGCTCAAGATTGTAACTGGGATCCAGTTATCTTTGACATGCTCATTAAGGCTTATGTGAAAGCTGGTATGATTAGAGATGGTTTTATCAGTTTTAAGAAGACACTAGAAGTCGGATTTGTTCCGAGTGTGATTGCTTGCAATTGTCTTATGAATGGGTTGGTGAGGTTGAATTGTTTAGATCAGTGTTGGGAGGTGTATGAGGATATGGGAAGGATTGGGGTACACCCAAATGTGTATACTTTTAATATTTTGACTAATGTTTTGTGCAAGGATGGAGATGTTGCAAAAGTGAATGCTTTTTTGGATAGAATGGAAGAAGAAGGATTTGATCCCGATATCGTGACTTATAATACTCTGATTAGTAGCTATTGTAGGAAAGGAAGGTTGGGAGATGCGTTTTATTTGTATAAGATCATGTTTAGGAGGGGTGTGATGCCGGATTTAGTGTCGTACACTGCCTTGATGCACGGTCTTTGTAAACAAGGGAATGTGAGGGAGGCTCATCAGCTTTTTCATCGGATGGTTCATAGAGGGTTGTATCCAGACATTGTGTCATATAACACTCTTATTGGTGGTTATTGCAATGAGGGGAAGATGCCAGAGTGTAAGTCATTGTTGTATGAGATGATAAAAAATGGTCTTCGTCCAGATGATTTCACTTGTAGGATGGTCACAAAAGGATATGGCAAAGAAGGCAAGTTGCTCTCTGCACTGAATTTGGTAGTGGAGCTTCAACGATTTCAAGTGTCTATTTCTCATCACATTTATGATTATCTAATAGTTGCATTGTGTCAAGAAAATCGGCCGTTTGCAGCCAAAAGTCTATTAGAAAGAAGTTCTCAAGATGGTTATTTGCCTGATTTGGATGTCTATAACAAATTGATGGAGTCCCTCTGCCAAAGCAATAATGTGACTGAGGCAAAGGTTTTGAAAGCCGAGATGGTTTGTAAGAACATCAAACCCAATCTTATCACATATAAAGCTCTAATATGCTGTCTATGTCGTATAAACAGAACAGTGGAAGGTGAGTCGTTACTGAAAGAGATGGTTGAATCTGGTTTGCAGCCAGATTCAGAAATATGCAGGTCATTGATGAAGGGTTACTGCAAAGAAAGGGATGTTGCAAAAGCAGAATCATTGTTAAGGTTCTTTGCCAAAGAATTTCAAGTTTTTGATACTGAAAGTTACAATGAACTTGTCAAAATTTTCTGTCAGGATGGTGATATGGCCAAGTTGTTGAAGTTACAAGATAGAATGATGAAAGTGGGTTTTGCACCAAATAGCCTTACATTCAAGTATGCCATCCATGGGTTATGGAAAACTACCAGACCAGAGAAAGATAATCTTCTTCTGGAATAA

Protein Analysis

630

Amino Acids

71.64

Weight (kDa)

8.4

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 219 - 268 3.8e-14 PPR repeat family
PPR_long PF17177 235 - 333 1.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 243 - 301 3.6e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 251 - 283 1e-06 PPR repeat
PPR_2 PF13041 259 - 299 5.2e-08 PPR repeat family
PPR_1 PF12854 286 - 317 2.8e-12 PPR repeat
PPR_2 PF13041 289 - 338 8.7e-19 PPR repeat family
PPR PF01535 292 - 322 3.8e-08 PPR repeat
PPR_3 PF13812 317 - 373 1.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 320 - 353 2.6e-11 PPR repeat
PPR_2 PF13041 324 - 362 2.2e-11 PPR repeat family
PPR PF01535 327 - 357 2.4e-08 PPR repeat
PPR_1 PF12854 355 - 387 1.2e-07 PPR repeat
PPR_2 PF13041 359 - 407 2.4e-13 PPR repeat family
PPR PF01535 362 - 392 7.1e-09 PPR repeat
PPR_2 PF13041 464 - 513 4.4e-11 PPR repeat family
PPR_1 PF12854 495 - 528 7.2e-07 PPR repeat
PPR_2 PF13041 502 - 547 4.2e-06 PPR repeat family
PPR_2 PF13041 570 - 616 8.5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40400 AT5G40400
fragaria_vesca FvH4_5g31860
malus_domestica MD09G1028300.v1.1
prunus_persica Prupe.3G290200_v2.0.a1
pyrus_communis pycom111g02230
rosa_chinensis RchiOBHm_Chr2g0173011
rosa_laevigata RLG00000022149
rosa_multiflora Rmu_sc0012743.1_g000003
rosa_roxburghii Rroxscaffold_2G00079320
rosa_samantha Rh2AG641500 Rh2AG644000 Rh2BG654800 Rh2CG620200 Rh2DG668400
rosa_wichuraiana Rw2G052920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
Acc36I ACCTGC 1 cut(s) 1608
AccI GTMKAC 1 cut(s) 770
AclWI GGATC 3 cut(s) 548, 561, 857
AcoI YGGCCR 2 cut(s) 1337, 1761
AcsI RAATTY 3 cut(s) 1249, 1694, 1737
AfaI GTAC 2 cut(s) 756, 986
AfiI CCNNNNNNNGG 2 cut(s) 281, 1842
AgsI TTSAA 9 cut(s) 352, 703, 1268, 1277, 1465, 1586, 1700, 1774, 1828
AhdI GACNNNNNGTC 1 cut(s) 1084
AjnI CCWGG 1 cut(s) 441
AjuI GAANNNNNNNTTGG 6 cut(s) 29, 61, 818, 850, 902, 934
AluBI AGCT 9 cut(s) 11, 338, 422, 475, 596, 900, 1042, 1264, 1517
AluI AGCT 9 cut(s) 11, 338, 422, 475, 596, 900, 1042, 1264, 1517
Alw21I GWGCWC 1 cut(s) 538
AlwI GGATC 3 cut(s) 548, 561, 857
AoxI GGCC 3 cut(s) 373, 1337, 1761
ApeKI GCWGC 2 cut(s) 1346, 1597
ApoI RAATTY 3 cut(s) 1249, 1694, 1737
ArsI GACNNNNNNTTYG 2 cut(s) 778, 810
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 706, 1571, 1766
AxyI CCTNAGG 1 cut(s) 311
BalI TGGCCA 1 cut(s) 1763
BamHI GGATCC 1 cut(s) 553
BarI GAAGNNNNNNTAC 2 cut(s) 1248, 1280
BbsI GAAGAC 2 cut(s) 638, 1166
Bbv12I GWGCWC 1 cut(s) 538
BbvCI CCTCAGC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 1358, 1609
BceAI ACGGC 1 cut(s) 1324
BciT130I CCWGG 1 cut(s) 443
BciVI GTATCC 1 cut(s) 1083
BclI TGATCA 1 cut(s) 325
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 1608
BfuI GTATCC 1 cut(s) 1083
BisI GCNGC 2 cut(s) 1347, 1598
BlpI GCTNAGC 1 cut(s) 205
BlsI GCNGC 2 cut(s) 1348, 1599
Bme1390I CCNGG 1 cut(s) 443
BmeRI GACNNNNNGTC 1 cut(s) 1084
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 317, 555
BmrFI CCNGG 1 cut(s) 443
BmrI ACTGGG 2 cut(s) 364, 559
BmsI GCATC 4 cut(s) 916, 957, 987, 1119
BmuI ACTGGG 2 cut(s) 364, 559
BpiI GAAGAC 2 cut(s) 638, 1166
BplI GAGNNNNNCTC 3 cut(s) 32, 1018, 1050
Bpu10I CCTNAGC 1 cut(s) 334
Bpu1102I GCTNAGC 1 cut(s) 205
BpuEI CTTGAG 4 cut(s) 197, 283, 522, 1359
BsaJI CCNNGG 2 cut(s) 441, 1840
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 1842
Bse1I ACTGG 3 cut(s) 359, 554, 557
Bse21I CCTNAGG 1 cut(s) 311
Bse3DI GCAATG 2 cut(s) 402, 1123
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 441, 1840
BseLI CCNNNNNNNGG 2 cut(s) 281, 1842
BseMI GCAATG 2 cut(s) 402, 1123
BseMII CTCAG 5 cut(s) 219, 325, 348, 391, 1440
BseNI ACTGG 3 cut(s) 359, 554, 557
BseRI GAGGAG 2 cut(s) 299, 322
BseX3I CGGCCG 1 cut(s) 1337
BseXI GCAGC 2 cut(s) 1358, 1609
BsgI GTGCAG 1 cut(s) 1227
Bsh1285I CGRYCG 1 cut(s) 1340
BshFI GGCC 3 cut(s) 375, 1339, 1763
BsiEI CGRYCG 1 cut(s) 1340
BsiHKAI GWGCWC 1 cut(s) 538
BsiSI CCGG 1 cut(s) 971
BslFI GGGAC 1 cut(s) 1408
BslI CCNNNNNNNGG 2 cut(s) 281, 1842
BsmFI GGGAC 1 cut(s) 1408
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 3 cut(s) 375, 1339, 1763
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 5 cut(s) 325, 553, 712, 862, 945
Bsp1720I GCTNAGC 1 cut(s) 205
Bsp19I CCATGG 1 cut(s) 1840
BspANI GGCC 3 cut(s) 375, 1339, 1763
BspCNI CTCAG 5 cut(s) 218, 324, 347, 390, 1441
BspLI GGNNCC 2 cut(s) 317, 555
BspMI ACCTGC 1 cut(s) 1608
BspPI GGATC 3 cut(s) 548, 561, 857
BspQI GCTCTTC 1 cut(s) 414
BsrDI GCAATG 2 cut(s) 402, 1123
BsrI ACTGG 3 cut(s) 359, 554, 557
BssECI CCNNGG 2 cut(s) 441, 1840
BssMI GATC 5 cut(s) 325, 553, 712, 862, 945
BssNAI GTATAC 1 cut(s) 771
BssT1I CCWWGG 1 cut(s) 1840
Bst1107I GTATAC 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 1004, 1552
Bst6I CTCTTC 2 cut(s) 91, 414
BstC8I GCNNGC 2 cut(s) 424, 670
BstDEI CTNAG 5 cut(s) 205, 311, 334, 377, 1449
BstDSI CCRYGG 1 cut(s) 1840
BstKTI GATC 5 cut(s) 328, 556, 715, 865, 948
BstMBI GATC 5 cut(s) 325, 553, 712, 862, 945
BstMCI CGRYCG 1 cut(s) 1340
BstMWI GCNNNNNNNGC 1 cut(s) 1227
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 104
BstV1I GCAGC 2 cut(s) 1358, 1609
BstV2I GAAGAC 2 cut(s) 638, 1166
BstX2I RGATCY 1 cut(s) 553
BstXI CCANNNNNNTGG 1 cut(s) 284
BstYI RGATCY 1 cut(s) 553
BstZ17I GTATAC 1 cut(s) 771
BstZI CGGCCG 1 cut(s) 1337
Bsu36I CCTNAGG 1 cut(s) 311
BsuI GTATCC 1 cut(s) 1083
BsuRI GGCC 3 cut(s) 375, 1339, 1763
BtgI CCRYGG 1 cut(s) 1840
BtsI GCAGTG 1 cut(s) 987
BtsIMutI CAGTG 4 cut(s) 722, 987, 1244, 1557
BveI ACCTGC 1 cut(s) 1608
Cac8I GCNNGC 2 cut(s) 424, 670
Cfr13I GGNCC 1 cut(s) 373
CseI GACGC 1 cut(s) 483
Csp6I GTAC 2 cut(s) 755, 985
CviAII CATG 4 cut(s) 365, 571, 949, 1841
CviQI GTAC 2 cut(s) 755, 985
DdeI CTNAG 5 cut(s) 205, 311, 334, 377, 1449
DpnI GATC 5 cut(s) 327, 555, 714, 864, 947
DpnII GATC 5 cut(s) 325, 553, 712, 862, 945
DriI GACNNNNNGTC 1 cut(s) 1084
EaeI YGGCCR 2 cut(s) 1337, 1761
EagI CGGCCG 1 cut(s) 1337
Eam1104I CTCTTC 2 cut(s) 91, 414
Eam1105I GACNNNNNGTC 1 cut(s) 1084
EarI CTCTTC 2 cut(s) 91, 414
EclXI CGGCCG 1 cut(s) 1337
Eco130I CCWWGG 1 cut(s) 1840
Eco32I GATATC 1 cut(s) 871
Eco52I CGGCCG 1 cut(s) 1337
Eco81I CCTNAGG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 871
EcoT14I CCWWGG 1 cut(s) 1840
ErhI CCWWGG 1 cut(s) 1840
FaeI CATG 4 cut(s) 368, 574, 952, 1844
FalI AAGNNNNNCTT 1 cut(s) 1863
FaqI GGGAC 1 cut(s) 1408
FatI CATG 4 cut(s) 364, 570, 948, 1840
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 2 cut(s) 1347, 1598
Fsp4HI GCNGC 2 cut(s) 1347, 1598
FspBI CTAG 1 cut(s) 638
GluI GCNGC 2 cut(s) 1347, 1598
HaeIII GGCC 3 cut(s) 375, 1339, 1763
HapII CCGG 1 cut(s) 971
HgaI GACGC 1 cut(s) 483
Hin1II CATG 4 cut(s) 368, 574, 952, 1844
HincII GTYRAC 1 cut(s) 290
HindII GTYRAC 1 cut(s) 290
HinfI GANTC 7 cut(s) 4, 119, 1421, 1562, 1586, 1604, 1667
HpaII CCGG 1 cut(s) 971
HphI GGTGA 3 cut(s) 706, 1571, 1766
Hpy166II GTNNAC 5 cut(s) 290, 757, 771, 987, 1013
Hpy188I TCNGA 7 cut(s) 325, 380, 647, 657, 891, 1053, 1609
Hpy188III TCNNGA 9 cut(s) 539, 866, 874, 1076, 1181, 1328, 1376, 1748, 1886
Hpy8I GTNNAC 5 cut(s) 290, 757, 771, 987, 1013
HpyAV CCTTC 7 cut(s) 278, 738, 848, 909, 1220, 1550, 1624
HpyCH4III ACNGT 2 cut(s) 1004, 1552
HpyF10VI GCNNNNNNNGC 1 cut(s) 1227
HpyF3I CTNAG 5 cut(s) 205, 311, 334, 377, 1449
Hsp92II CATG 4 cut(s) 368, 574, 952, 1844
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 325, 553, 712, 862, 945
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 1261
Lsp1109I GCAGC 2 cut(s) 1358, 1609
LweI GCATC 4 cut(s) 916, 957, 987, 1119
MaeI CTAG 1 cut(s) 638
MaeIII GTNAC 8 cut(s) 545, 874, 1204, 1444, 1566, 1634, 1718, 1776
MalI GATC 5 cut(s) 327, 555, 714, 864, 947
MboI GATC 5 cut(s) 325, 553, 712, 862, 945
MfeI CAATTG 1 cut(s) 673
MflI RGATCY 1 cut(s) 553
MhlI GDGCHC 1 cut(s) 538
MlsI TGGCCA 1 cut(s) 1763
MluCI AATT 8 cut(s) 452, 464, 673, 703, 1249, 1412, 1694, 1737
MluNI TGGCCA 1 cut(s) 1763
MlyI GAGTC 3 cut(s) 113, 1430, 1571
MmeI TCCRAC 1 cut(s) 625
Mox20I TGGCCA 1 cut(s) 1763
MscI TGGCCA 1 cut(s) 1763
MseI TTAA 5 cut(s) 51, 579, 627, 777, 1676
MslI CAYNNNNRTG 3 cut(s) 282, 762, 1299
Msp20I TGGCCA 1 cut(s) 1763
MspI CCGG 1 cut(s) 971
MspR9I CCNGG 1 cut(s) 443
MunI CAATTG 1 cut(s) 673
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 1 cut(s) 1227
NcoI CCATGG 1 cut(s) 1840
NdeII GATC 5 cut(s) 325, 553, 712, 862, 945
NlaIII CATG 4 cut(s) 368, 574, 952, 1844
NlaIV GGNNCC 2 cut(s) 317, 555
NmeAIII GCCGAG 1 cut(s) 1495
NmuCI GTSAC 3 cut(s) 874, 1204, 1444
NspI RCATGY 1 cut(s) 574
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 4 cut(s) 4, 1586, 1604, 1667
PkrI GCNGC 2 cut(s) 1348, 1599
PleI GAGTC 3 cut(s) 113, 1429, 1570
PpsI GAGTC 3 cut(s) 113, 1429, 1570
PsiI TTATAA 1 cut(s) 882
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 317, 555
PspPI GGNCC 1 cut(s) 373
PsuI RGATCY 1 cut(s) 553
RsaI GTAC 2 cut(s) 756, 986
RsaNI GTAC 2 cut(s) 755, 985
RseI CAYNNNNRTG 3 cut(s) 282, 762, 1299
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 5 cut(s) 51, 579, 627, 777, 1676
SatI GCNGC 2 cut(s) 1347, 1598
Sau3AI GATC 5 cut(s) 325, 553, 712, 862, 945
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 3 cut(s) 113, 1430, 1571
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 4 cut(s) 916, 957, 987, 1119
SfcI CTRYAG 1 cut(s) 104
SmiMI CAYNNNNRTG 3 cut(s) 282, 762, 1299
SmlI CTYRAG 4 cut(s) 212, 298, 537, 1374
SmoI CTYRAG 4 cut(s) 212, 298, 537, 1374
Sse9I AATT 8 cut(s) 452, 464, 673, 703, 1249, 1412, 1694, 1737
SspI AATATT 1 cut(s) 781
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 1 cut(s) 1840
TaaI ACNGT 2 cut(s) 1004, 1552
TaqI TCGA 1 cut(s) 7
TasI AATT 8 cut(s) 452, 464, 673, 703, 1249, 1412, 1694, 1737
TfiI GAWTC 4 cut(s) 4, 1586, 1604, 1667
Tru1I TTAA 5 cut(s) 51, 579, 627, 777, 1676
Tru9I TTAA 5 cut(s) 51, 579, 627, 777, 1676
TscAI CASTG 4 cut(s) 722, 994, 1251, 1557
TseFI GTSAC 3 cut(s) 874, 1204, 1444
TseI GCWGC 2 cut(s) 1346, 1597
Tsp45I GTSAC 3 cut(s) 874, 1204, 1444
TspRI CASTG 4 cut(s) 722, 994, 1251, 1557
XapI RAATTY 3 cut(s) 1249, 1694, 1737
XceI RCATGY 1 cut(s) 574
XmiI GTMKAC 1 cut(s) 770
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.