Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G40400 AT5G40400 |
| fragaria_vesca | FvH4_5g31860 |
| malus_domestica | MD09G1028300.v1.1 |
| prunus_persica | Prupe.3G290200_v2.0.a1 |
| pyrus_communis | pycom111g02230 |
| rosa_chinensis | RchiOBHm_Chr2g0173011 |
| rosa_laevigata | RLG00000022149 |
| rosa_multiflora | Rmu_sc0012743.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00079320 |
| rosa_samantha | Rh2AG641500 Rh2AG644000 Rh2BG654800 Rh2CG620200 Rh2DG668400 |
| rosa_wichuraiana | Rw2G052920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 611, 1632 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 547 |
| AccI | GTMKAC | 1 cut(s) | 794 |
| AccII | CGCG | 1 cut(s) | 1908 |
| AciI | CCGC | 1 cut(s) | 470 |
| AclWI | GGATC | 7 cut(s) | 41, 572, 585, 881, 1091, 1104, 1855 |
| AcoI | YGGCCR | 1 cut(s) | 1785 |
| AcsI | RAATTY | 4 cut(s) | 324, 544, 1273, 1718 |
| AcuI | CTGAAG | 2 cut(s) | 117, 582 |
| AfaI | GTAC | 2 cut(s) | 559, 1661 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 30, 311, 547, 745, 1468 |
| AflII | CTTAAG | 1 cut(s) | 248 |
| AflIII | ACRYGT | 1 cut(s) | 17 |
| AjnI | CCWGG | 2 cut(s) | 329, 1414 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 842, 874, 926, 958 |
| Alw21I | GWGCWC | 1 cut(s) | 319 |
| Alw26I | GTCTC | 3 cut(s) | 410, 1167, 1452 |
| AlwI | GGATC | 7 cut(s) | 41, 572, 585, 881, 1091, 1104, 1855 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1106 |
| AoxI | GGCC | 1 cut(s) | 1785 |
| ApeKI | GCWGC | 2 cut(s) | 1258, 1370 |
| ApoI | RAATTY | 4 cut(s) | 324, 544, 1273, 1718 |
| AseI | ATTAAT | 1 cut(s) | 813 |
| AspLEI | GCGC | 1 cut(s) | 1834 |
| AsuHPI | GGTGA | 3 cut(s) | 513, 1595, 1790 |
| BalI | TGGCCA | 1 cut(s) | 1787 |
| BamHI | GGATCC | 2 cut(s) | 577, 1096 |
| BbsI | GAAGAC | 1 cut(s) | 1756 |
| Bbv12I | GWGCWC | 1 cut(s) | 319 |
| BbvCI | CCTCAGC | 1 cut(s) | 364 |
| BbvI | GCAGC | 2 cut(s) | 1245, 1382 |
| BccI | CCATC | 8 cut(s) | 155, 273, 629, 757, 824, 1397, 1597, 1769 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1145, 1179 |
| BciT130I | CCWGG | 2 cut(s) | 331, 1416 |
| BciVI | GTATCC | 1 cut(s) | 771 |
| BclI | TGATCA | 1 cut(s) | 1185 |
| BcoDI | GTCTC | 3 cut(s) | 410, 1167, 1452 |
| BfaI | CTAG | 3 cut(s) | 311, 1334, 1631 |
| BfmI | CTRYAG | 1 cut(s) | 140 |
| BfrI | CTTAAG | 1 cut(s) | 248 |
| BfuAI | ACCTGC | 2 cut(s) | 611, 1632 |
| BfuI | GTATCC | 1 cut(s) | 771 |
| BisI | GCNGC | 2 cut(s) | 1259, 1371 |
| BlsI | GCNGC | 2 cut(s) | 1260, 1372 |
| Bme1390I | CCNGG | 2 cut(s) | 331, 1416 |
| BmiI | GGNNCC | 3 cut(s) | 579, 1098, 1623 |
| BmrFI | CCNGG | 2 cut(s) | 331, 1416 |
| BmrI | ACTGGG | 1 cut(s) | 583 |
| BmsI | GCATC | 4 cut(s) | 13, 940, 981, 1143 |
| BmuI | ACTGGG | 1 cut(s) | 583 |
| BpiI | GAAGAC | 1 cut(s) | 1756 |
| Bpu10I | CCTNAGC | 1 cut(s) | 364 |
| BpuEI | CTTGAG | 1 cut(s) | 303 |
| BsaAI | YACGTR | 1 cut(s) | 1505 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1407 |
| BsaI | GGTCTC | 1 cut(s) | 410 |
| BsaJI | CCNNGG | 3 cut(s) | 330, 1713, 1864 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 146, 176 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 30, 311, 547, 745, 1468 |
| Bse1I | ACTGG | 3 cut(s) | 578, 581, 739 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1407 |
| BseBI | CCWGG | 2 cut(s) | 331, 1416 |
| BseDI | CCNNGG | 3 cut(s) | 330, 1713, 1864 |
| BseGI | GGATG | 7 cut(s) | 147, 835, 1083, 1408, 1681, 1780, 1818 |
| BseJI | GATNNNNATC | 1 cut(s) | 1407 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 30, 311, 547, 745, 1468 |
| BseMII | CTCAG | 3 cut(s) | 355, 378, 421 |
| BseNI | ACTGG | 3 cut(s) | 578, 581, 739 |
| BseRI | GAGGAG | 2 cut(s) | 352, 773 |
| BseXI | GCAGC | 2 cut(s) | 1245, 1382 |
| BseYI | CCCAGC | 1 cut(s) | 680 |
| Bsh1236I | CGCG | 1 cut(s) | 1908 |
| BshFI | GGCC | 1 cut(s) | 1787 |
| BsiHKAI | GWGCWC | 1 cut(s) | 319 |
| BsiSI | CCGG | 1 cut(s) | 995 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 30, 311, 547, 745, 1468 |
| BsmAI | GTCTC | 3 cut(s) | 410, 1167, 1452 |
| BsmI | GAATGC | 1 cut(s) | 856 |
| BsnI | GGCC | 1 cut(s) | 1787 |
| Bso31I | GGTCTC | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 1 cut(s) | 319 |
| Bsp143I | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| Bsp19I | CCATGG | 1 cut(s) | 1864 |
| BspACI | CCGC | 1 cut(s) | 470 |
| BspANI | GGCC | 1 cut(s) | 1787 |
| BspCNI | CTCAG | 3 cut(s) | 354, 377, 420 |
| BspFNI | CGCG | 1 cut(s) | 1908 |
| BspHI | TCATGA | 1 cut(s) | 1315 |
| BspLI | GGNNCC | 3 cut(s) | 579, 1098, 1623 |
| BspMI | ACCTGC | 2 cut(s) | 611, 1632 |
| BspPI | GGATC | 7 cut(s) | 41, 572, 585, 881, 1091, 1104, 1855 |
| BspTI | CTTAAG | 1 cut(s) | 248 |
| BspTNI | GGTCTC | 1 cut(s) | 410 |
| BsrI | ACTGG | 3 cut(s) | 578, 581, 739 |
| BssECI | CCNNGG | 3 cut(s) | 330, 1713, 1864 |
| BssMI | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| BssNAI | GTATAC | 1 cut(s) | 795 |
| BssT1I | CCWWGG | 2 cut(s) | 1713, 1864 |
| Bst1107I | GTATAC | 1 cut(s) | 795 |
| Bst2UI | CCWGG | 2 cut(s) | 331, 1416 |
| Bst4CI | ACNGT | 2 cut(s) | 1108, 1576 |
| Bst6I | CTCTTC | 1 cut(s) | 121 |
| BstAFI | CTTAAG | 1 cut(s) | 248 |
| BstBAI | YACGTR | 1 cut(s) | 1505 |
| BstC8I | GCNNGC | 2 cut(s) | 454, 474 |
| BstDEI | CTNAG | 4 cut(s) | 341, 364, 407, 1398 |
| BstDSI | CCRYGG | 1 cut(s) | 1864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 309 |
| BstF5I | GGATG | 7 cut(s) | 147, 835, 1083, 1408, 1681, 1780, 1818 |
| BstFNI | CGCG | 1 cut(s) | 1908 |
| BstHHI | GCGC | 1 cut(s) | 1834 |
| BstKTI | GATC | 9 cut(s) | 36, 580, 889, 972, 1099, 1169, 1188, 1525, 1863 |
| BstMAI | GTCTC | 3 cut(s) | 410, 1167, 1452 |
| BstMBI | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| BstNI | CCWGG | 2 cut(s) | 331, 1416 |
| BstNSI | RCATGY | 3 cut(s) | 21, 456, 598 |
| BstSCI | CCNGG | 2 cut(s) | 329, 1414 |
| BstSFI | CTRYAG | 1 cut(s) | 140 |
| BstSNI | TACGTA | 1 cut(s) | 1505 |
| BstUI | CGCG | 1 cut(s) | 1908 |
| BstV1I | GCAGC | 2 cut(s) | 1245, 1382 |
| BstV2I | GAAGAC | 1 cut(s) | 1756 |
| BstX2I | RGATCY | 3 cut(s) | 33, 577, 1096 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1795 |
| BstYI | RGATCY | 3 cut(s) | 33, 577, 1096 |
| BstZ17I | GTATAC | 1 cut(s) | 795 |
| BsuI | GTATCC | 1 cut(s) | 771 |
| BsuRI | GGCC | 1 cut(s) | 1787 |
| BtgI | CCRYGG | 1 cut(s) | 1864 |
| BtsCI | GGATG | 7 cut(s) | 147, 835, 1083, 1408, 1681, 1780, 1818 |
| BtsI | GCAGTG | 1 cut(s) | 1478 |
| BtsIMutI | CAGTG | 4 cut(s) | 746, 1104, 1478, 1581 |
| BveI | ACCTGC | 2 cut(s) | 611, 1632 |
| Cac8I | GCNNGC | 2 cut(s) | 454, 474 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1106 |
| CciI | TCATGA | 1 cut(s) | 1315 |
| CfoI | GCGC | 1 cut(s) | 1834 |
| Csp6I | GTAC | 2 cut(s) | 558, 1660 |
| CviAII | CATG | 9 cut(s) | 18, 453, 595, 973, 1000, 1142, 1178, 1316, 1865 |
| CviQI | GTAC | 2 cut(s) | 558, 1660 |
| DdeI | CTNAG | 4 cut(s) | 341, 364, 407, 1398 |
| DpnI | GATC | 9 cut(s) | 35, 579, 888, 971, 1098, 1168, 1187, 1524, 1862 |
| DpnII | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| DraI | TTTAAA | 1 cut(s) | 1852 |
| EaeI | YGGCCR | 1 cut(s) | 1785 |
| Eam1104I | CTCTTC | 1 cut(s) | 121 |
| EarI | CTCTTC | 1 cut(s) | 121 |
| Eco105I | TACGTA | 1 cut(s) | 1505 |
| Eco130I | CCWWGG | 2 cut(s) | 1713, 1864 |
| Eco31I | GGTCTC | 1 cut(s) | 410 |
| Eco32I | GATATC | 1 cut(s) | 1426 |
| Eco57I | CTGAAG | 2 cut(s) | 117, 582 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 309 |
| EcoRII | CCWGG | 2 cut(s) | 329, 1414 |
| EcoRV | GATATC | 1 cut(s) | 1426 |
| EcoT14I | CCWWGG | 2 cut(s) | 1713, 1864 |
| EcoT22I | ATGCAT | 3 cut(s) | 6, 856, 955 |
| ErhI | CCWWGG | 2 cut(s) | 1713, 1864 |
| FaeI | CATG | 9 cut(s) | 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868 |
| FatI | CATG | 9 cut(s) | 17, 452, 594, 972, 999, 1141, 1177, 1315, 1864 |
| FbaI | TGATCA | 1 cut(s) | 1185 |
| FblI | GTMKAC | 1 cut(s) | 794 |
| Fnu4HI | GCNGC | 2 cut(s) | 1259, 1371 |
| FokI | GGATG | 7 cut(s) | 134, 842, 1090, 1415, 1688, 1787, 1825 |
| Fsp4HI | GCNGC | 2 cut(s) | 1259, 1371 |
| FspBI | CTAG | 3 cut(s) | 311, 1334, 1631 |
| GlaI | GCGC | 1 cut(s) | 1833 |
| GluI | GCNGC | 2 cut(s) | 1259, 1371 |
| GsaI | CCCAGC | 1 cut(s) | 684 |
| HaeIII | GGCC | 1 cut(s) | 1787 |
| HapII | CCGG | 1 cut(s) | 995 |
| HhaI | GCGC | 1 cut(s) | 1834 |
| Hin1II | CATG | 9 cut(s) | 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868 |
| Hin6I | GCGC | 1 cut(s) | 1832 |
| HinP1I | GCGC | 1 cut(s) | 1832 |
| HindIII | AAGCTT | 1 cut(s) | 1901 |
| HinfI | GANTC | 6 cut(s) | 155, 1160, 1445, 1586, 1610, 1733 |
| HpaII | CCGG | 1 cut(s) | 995 |
| HphI | GGTGA | 3 cut(s) | 513, 1595, 1790 |
| Hpy166II | GTNNAC | 3 cut(s) | 558, 795, 1037 |
| Hpy8I | GTNNAC | 3 cut(s) | 558, 795, 1037 |
| HpyAV | CCTTC | 8 cut(s) | 284, 762, 872, 933, 1039, 1229, 1244, 1574 |
| HpyCH4III | ACNGT | 2 cut(s) | 1108, 1576 |
| HpyCH4IV | ACGT | 1 cut(s) | 1504 |
| HpyF3I | CTNAG | 4 cut(s) | 341, 364, 407, 1398 |
| HpySE526I | ACGT | 1 cut(s) | 1504 |
| Hsp92II | CATG | 9 cut(s) | 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868 |
| HspAI | GCGC | 1 cut(s) | 1832 |
| Ksp22I | TGATCA | 1 cut(s) | 1185 |
| Kzo9I | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| LmnI | GCTCC | 3 cut(s) | 461, 1285, 1627 |
| Lsp1109I | GCAGC | 2 cut(s) | 1245, 1382 |
| LweI | GCATC | 4 cut(s) | 13, 940, 981, 1143 |
| MaeI | CTAG | 3 cut(s) | 311, 1334, 1631 |
| MaeII | ACGT | 1 cut(s) | 1504 |
| MaeIII | GTNAC | 4 cut(s) | 569, 898, 1559, 1742 |
| MalI | GATC | 9 cut(s) | 35, 579, 888, 971, 1098, 1168, 1187, 1524, 1862 |
| MboI | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| MfeI | CAATTG | 1 cut(s) | 382 |
| MflI | RGATCY | 3 cut(s) | 33, 577, 1096 |
| MhlI | GDGCHC | 1 cut(s) | 319 |
| MlsI | TGGCCA | 1 cut(s) | 1787 |
| MluNI | TGGCCA | 1 cut(s) | 1787 |
| MlyI | GAGTC | 3 cut(s) | 149, 1169, 1454 |
| MmeI | TCCRAC | 3 cut(s) | 924, 1074, 1776 |
| MnlI | CCTC | 9 cut(s) | 315, 373, 751, 977, 1048, 1082, 1138, 1468, 1765 |
| Mox20I | TGGCCA | 1 cut(s) | 1787 |
| Mph1103I | ATGCAT | 3 cut(s) | 6, 856, 955 |
| MscI | TGGCCA | 1 cut(s) | 1787 |
| MseI | TTAA | 7 cut(s) | 249, 291, 603, 801, 813, 1515, 1851 |
| MslI | CAYNNNNRTG | 2 cut(s) | 312, 786 |
| Msp20I | TGGCCA | 1 cut(s) | 1787 |
| MspCI | CTTAAG | 1 cut(s) | 248 |
| MspI | CCGG | 1 cut(s) | 995 |
| MspR9I | CCNGG | 2 cut(s) | 331, 1416 |
| MunI | CAATTG | 1 cut(s) | 382 |
| Mva1269I | GAATGC | 1 cut(s) | 856 |
| MvaI | CCWGG | 2 cut(s) | 331, 1416 |
| MvnI | CGCG | 1 cut(s) | 1908 |
| NcoI | CCATGG | 1 cut(s) | 1864 |
| NdeII | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| NlaIII | CATG | 9 cut(s) | 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868 |
| NlaIV | GGNNCC | 3 cut(s) | 579, 1098, 1623 |
| NmeAIII | GCCGAG | 1 cut(s) | 1519 |
| NmuCI | GTSAC | 2 cut(s) | 898, 1559 |
| NsiI | ATGCAT | 3 cut(s) | 6, 856, 955 |
| NspI | RCATGY | 3 cut(s) | 21, 456, 598 |
| PaeI | GCATGC | 1 cut(s) | 456 |
| PagI | TCATGA | 1 cut(s) | 1315 |
| PciI | ACATGT | 1 cut(s) | 17 |
| PctI | GAATGC | 1 cut(s) | 856 |
| PfeI | GAWTC | 3 cut(s) | 1586, 1610, 1733 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 547 |
| PkrI | GCNGC | 2 cut(s) | 1260, 1372 |
| PleI | GAGTC | 3 cut(s) | 149, 1168, 1453 |
| PpsI | GAGTC | 3 cut(s) | 149, 1168, 1453 |
| Ppu21I | YACGTR | 1 cut(s) | 1505 |
| PscI | ACATGT | 1 cut(s) | 17 |
| PshBI | ATTAAT | 1 cut(s) | 813 |
| Psp6I | CCWGG | 2 cut(s) | 329, 1414 |
| PspFI | CCCAGC | 1 cut(s) | 680 |
| PspGI | CCWGG | 2 cut(s) | 329, 1414 |
| PspN4I | GGNNCC | 3 cut(s) | 579, 1098, 1623 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1106 |
| PsuI | RGATCY | 3 cut(s) | 33, 577, 1096 |
| RsaI | GTAC | 2 cut(s) | 559, 1661 |
| RsaNI | GTAC | 2 cut(s) | 558, 1660 |
| RseI | CAYNNNNRTG | 2 cut(s) | 312, 786 |
| SaqAI | TTAA | 7 cut(s) | 249, 291, 603, 801, 813, 1515, 1851 |
| SatI | GCNGC | 2 cut(s) | 1259, 1371 |
| Sau3AI | GATC | 9 cut(s) | 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860 |
| SchI | GAGTC | 3 cut(s) | 149, 1169, 1454 |
| ScrFI | CCNGG | 2 cut(s) | 331, 1416 |
| SduI | GDGCHC | 1 cut(s) | 319 |
| SfaNI | GCATC | 4 cut(s) | 13, 940, 981, 1143 |
| SfcI | CTRYAG | 1 cut(s) | 140 |
| SmiI | ATTTAAAT | 1 cut(s) | 1852 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 312, 786 |
| SmlI | CTYRAG | 2 cut(s) | 248, 318 |
| SmoI | CTYRAG | 2 cut(s) | 248, 318 |
| SnaBI | TACGTA | 1 cut(s) | 1505 |
| SphI | GCATGC | 1 cut(s) | 456 |
| SsiI | CCGC | 1 cut(s) | 470 |
| SspI | AATATT | 1 cut(s) | 805 |
| SspMI | CTAG | 3 cut(s) | 311, 1334, 1631 |
| StyD4I | CCNGG | 2 cut(s) | 329, 1414 |
| StyI | CCWWGG | 2 cut(s) | 1713, 1864 |
| SwaI | ATTTAAAT | 1 cut(s) | 1852 |
| TaaI | ACNGT | 2 cut(s) | 1108, 1576 |
| TaiI | ACGT | 1 cut(s) | 1507 |
| TaqI | TCGA | 2 cut(s) | 1165, 1360 |
| TatI | WGTACW | 1 cut(s) | 557 |
| TfiI | GAWTC | 3 cut(s) | 1586, 1610, 1733 |
| Tru1I | TTAA | 7 cut(s) | 249, 291, 603, 801, 813, 1515, 1851 |
| Tru9I | TTAA | 7 cut(s) | 249, 291, 603, 801, 813, 1515, 1851 |
| TscAI | CASTG | 4 cut(s) | 746, 1111, 1485, 1581 |
| TseFI | GTSAC | 2 cut(s) | 898, 1559 |
| TseI | GCWGC | 2 cut(s) | 1258, 1370 |
| Tsp45I | GTSAC | 2 cut(s) | 898, 1559 |
| TspRI | CASTG | 4 cut(s) | 746, 1111, 1485, 1581 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 547 |
| Vha464I | CTTAAG | 1 cut(s) | 248 |
| VspI | ATTAAT | 1 cut(s) | 813 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 309 |
| XapI | RAATTY | 4 cut(s) | 324, 544, 1273, 1718 |
| XbaI | TCTAGA | 1 cut(s) | 1630 |
| XceI | RCATGY | 3 cut(s) | 21, 456, 598 |
| XmiI | GTMKAC | 1 cut(s) | 794 |
| XspI | CTAG | 3 cut(s) | 311, 1334, 1631 |
| Zsp2I | ATGCAT | 3 cut(s) | 6, 856, 955 |