Prupe.3G290200_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
26050152 .. 26052068
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G290200.1

Sequence Viewer

Length: 1917 bp
ATGCATCGTGCTTCAACATGTTCCATAAATCGGATCTTTGTTGTGTCAGCCAACTCTCCATATTATACAAAACCACTCTTGAACATCAATTTCATACTAAAAATATCAGCTCTCTCTTCTTCTTCTTCTTCTTCAGCTCTACAGACCATCCCAGACTCTCACTCCATATCAGTTTCAAACCCACTTTATCATTTTCTTCCCCAAACCCAAAACCCCAACAACATAGTCAATCTCATCTGTTCAAGCCTTAAGCAAGGAAACGCCCATCTTTCCCTTCTTCAAAATGACATTAAAGAGCTTTTTCCTCATCTAGGTGCTCAAGAAATTTCCAGGGTTCTGCTCAGATTTCATTCTGATTACTCCTCAGCTCTTGTTTTTTTCAATTGGGTCAAGAATGGTTTGGGTCTCAGACCCACTACCCAGAATTATTGTATTGTTATTCATATTCTGGCATGCTCCAAAAAGTTTCCGCAAGCTATGAAATTGTTATGGGAGTTGATAGAGTTGGTCAGAGATGTTTCACCAAAAGATGACATTTTCCAAAATTTGGTTGTGTGTACTGAAGATTGTAACTGGGATCCAGTAATCTTTGACATGCTCATTAAGGCTTATGTGAAAGCAGGTATGATTGGAGATGGTTTTAGCACTATGAAAAAGGCAATAAGGGTTGGTTTTATTCCCAGCGTGATTGCTTGTAATTGTCTTTTGAATGGGTTAGTGAAGTTGAATTGTATTGACCAGTGTTGGGAAGTATATGAGGAGATGGGAAGGATTGGGATACACCCAAATGTGTATACTTTTAATATTTTGATTAATGTTTTGTGCAAGGATGGAGATGTTGATAAAGTGAATGCATTTTTGGAGAAAATGGAAGAAGAAGGATTTGATCCCGATATTGTGACATATAATACTCTAATTAGTAGCTATTGTAGGAAAGGAAGGTTGGAAGATGCATTTTATTTGTATAAGATCATGTATAGGAGAGGTGTGATGCCGGACATGGTTTCATATACTGCCTTGATGAATGGTCTTTGTAAACAAGGGAAGGTAAGGGAGGCTCATCAGATTTTTCATCGGATGATTGATAGAGGGTTGGATCCAGACACTGTATCGTATAACACTCTTATTAGTGGTTATTGCCATGAGGGGAAGATGCAAGAGTCTCGATCATTGTTGCATGAGATGATCAGAAATGGTATTTGTCCAGATGATTTCACTTGTAGGATAGTCATAGAAGGATATGGCAAAGAAGGTAAGCTGCTCTCTGCTCTGAATTTGGTTGTGGAGCTTCAAAGATTTCAAGTGTCTATTTCTCATGATGTTTATGATTATCTAGTAGTTGCCTTGTGTCAAGAACTTCGACCATTTGCAGCTAAAAGTCTATTAGAAAGAAGTTCTAAGGATGGTCATCTGCCTGGTTTGGATATCTATAACAAATTGATTGAGTCTCTCTGTGAAAACCTTTATGTGGCAGAGGCACTGCTTTTGAAAGCCGAGATGATACGTAAGAACATTAAACCCGATCTTTTTACATACAGAACTCTAATATGCTGTCTATGTCACATAAATAGAACAGTGGAAGGTGAATCTCTAATGAAAGAGATGGCTGAATCTGGTTTGGCTCCTAATCTAGAGATATGCAGGTCATTGATAAAGGGGTACTGCAAAGAAAGGGATGTTGATAAAGCAGAAACATTGTTAGGCTTGTTTGCCAAGGAATTTCAAGTTTTTGATTCTGAAAGTTACAATACACTTGTTGAAGTCTTCTGTGAGGATGGTGATATGGCCAAGTTGTTGGAGTTGCAGGATAGGATGATGAAAGTGGGTTTTGCGCCGAATAGCCTTACATTTAAATATGTGATCCATGGATTATGGAGAACTGCAAGACCAGATAAAAACAAGCTTCGCGTGGAATAA

Protein Analysis

639

Amino Acids

72.52

Weight (kDa)

6.48

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40400 AT5G40400
fragaria_vesca FvH4_5g31860
malus_domestica MD09G1028300.v1.1
prunus_persica Prupe.3G290200_v2.0.a1
pyrus_communis pycom111g02230
rosa_chinensis RchiOBHm_Chr2g0173011
rosa_laevigata RLG00000022149
rosa_multiflora Rmu_sc0012743.1_g000003
rosa_roxburghii Rroxscaffold_2G00079320
rosa_samantha Rh2AG641500 Rh2AG644000 Rh2BG654800 Rh2CG620200 Rh2DG668400
rosa_wichuraiana Rw2G052920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 611, 1632
AccB7I CCANNNNNTGG 1 cut(s) 547
AccI GTMKAC 1 cut(s) 794
AccII CGCG 1 cut(s) 1908
AciI CCGC 1 cut(s) 470
AclWI GGATC 7 cut(s) 41, 572, 585, 881, 1091, 1104, 1855
AcoI YGGCCR 1 cut(s) 1785
AcsI RAATTY 4 cut(s) 324, 544, 1273, 1718
AcuI CTGAAG 2 cut(s) 117, 582
AfaI GTAC 2 cut(s) 559, 1661
AfiI CCNNNNNNNGG 5 cut(s) 30, 311, 547, 745, 1468
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 17
AjnI CCWGG 2 cut(s) 329, 1414
AjuI GAANNNNNNNTTGG 4 cut(s) 842, 874, 926, 958
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 3 cut(s) 410, 1167, 1452
AlwI GGATC 7 cut(s) 41, 572, 585, 881, 1091, 1104, 1855
AlwNI CAGNNNCTG 1 cut(s) 1106
AoxI GGCC 1 cut(s) 1785
ApeKI GCWGC 2 cut(s) 1258, 1370
ApoI RAATTY 4 cut(s) 324, 544, 1273, 1718
AseI ATTAAT 1 cut(s) 813
AspLEI GCGC 1 cut(s) 1834
AsuHPI GGTGA 3 cut(s) 513, 1595, 1790
BalI TGGCCA 1 cut(s) 1787
BamHI GGATCC 2 cut(s) 577, 1096
BbsI GAAGAC 1 cut(s) 1756
Bbv12I GWGCWC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 1245, 1382
BccI CCATC 8 cut(s) 155, 273, 629, 757, 824, 1397, 1597, 1769
BcgI CGANNNNNNTGC 2 cut(s) 1145, 1179
BciT130I CCWGG 2 cut(s) 331, 1416
BciVI GTATCC 1 cut(s) 771
BclI TGATCA 1 cut(s) 1185
BcoDI GTCTC 3 cut(s) 410, 1167, 1452
BfaI CTAG 3 cut(s) 311, 1334, 1631
BfmI CTRYAG 1 cut(s) 140
BfrI CTTAAG 1 cut(s) 248
BfuAI ACCTGC 2 cut(s) 611, 1632
BfuI GTATCC 1 cut(s) 771
BisI GCNGC 2 cut(s) 1259, 1371
BlsI GCNGC 2 cut(s) 1260, 1372
Bme1390I CCNGG 2 cut(s) 331, 1416
BmiI GGNNCC 3 cut(s) 579, 1098, 1623
BmrFI CCNGG 2 cut(s) 331, 1416
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 4 cut(s) 13, 940, 981, 1143
BmuI ACTGGG 1 cut(s) 583
BpiI GAAGAC 1 cut(s) 1756
Bpu10I CCTNAGC 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 303
BsaAI YACGTR 1 cut(s) 1505
BsaBI GATNNNNATC 1 cut(s) 1407
BsaI GGTCTC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 330, 1713, 1864
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 311, 547, 745, 1468
Bse1I ACTGG 3 cut(s) 578, 581, 739
Bse8I GATNNNNATC 1 cut(s) 1407
BseBI CCWGG 2 cut(s) 331, 1416
BseDI CCNNGG 3 cut(s) 330, 1713, 1864
BseGI GGATG 7 cut(s) 147, 835, 1083, 1408, 1681, 1780, 1818
BseJI GATNNNNATC 1 cut(s) 1407
BseLI CCNNNNNNNGG 5 cut(s) 30, 311, 547, 745, 1468
BseMII CTCAG 3 cut(s) 355, 378, 421
BseNI ACTGG 3 cut(s) 578, 581, 739
BseRI GAGGAG 2 cut(s) 352, 773
BseXI GCAGC 2 cut(s) 1245, 1382
BseYI CCCAGC 1 cut(s) 680
Bsh1236I CGCG 1 cut(s) 1908
BshFI GGCC 1 cut(s) 1787
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 1 cut(s) 995
BslI CCNNNNNNNGG 5 cut(s) 30, 311, 547, 745, 1468
BsmAI GTCTC 3 cut(s) 410, 1167, 1452
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 1 cut(s) 1787
Bso31I GGTCTC 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
Bsp19I CCATGG 1 cut(s) 1864
BspACI CCGC 1 cut(s) 470
BspANI GGCC 1 cut(s) 1787
BspCNI CTCAG 3 cut(s) 354, 377, 420
BspFNI CGCG 1 cut(s) 1908
BspHI TCATGA 1 cut(s) 1315
BspLI GGNNCC 3 cut(s) 579, 1098, 1623
BspMI ACCTGC 2 cut(s) 611, 1632
BspPI GGATC 7 cut(s) 41, 572, 585, 881, 1091, 1104, 1855
BspTI CTTAAG 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 410
BsrI ACTGG 3 cut(s) 578, 581, 739
BssECI CCNNGG 3 cut(s) 330, 1713, 1864
BssMI GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
BssNAI GTATAC 1 cut(s) 795
BssT1I CCWWGG 2 cut(s) 1713, 1864
Bst1107I GTATAC 1 cut(s) 795
Bst2UI CCWGG 2 cut(s) 331, 1416
Bst4CI ACNGT 2 cut(s) 1108, 1576
Bst6I CTCTTC 1 cut(s) 121
BstAFI CTTAAG 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 1505
BstC8I GCNNGC 2 cut(s) 454, 474
BstDEI CTNAG 4 cut(s) 341, 364, 407, 1398
BstDSI CCRYGG 1 cut(s) 1864
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 7 cut(s) 147, 835, 1083, 1408, 1681, 1780, 1818
BstFNI CGCG 1 cut(s) 1908
BstHHI GCGC 1 cut(s) 1834
BstKTI GATC 9 cut(s) 36, 580, 889, 972, 1099, 1169, 1188, 1525, 1863
BstMAI GTCTC 3 cut(s) 410, 1167, 1452
BstMBI GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
BstNI CCWGG 2 cut(s) 331, 1416
BstNSI RCATGY 3 cut(s) 21, 456, 598
BstSCI CCNGG 2 cut(s) 329, 1414
BstSFI CTRYAG 1 cut(s) 140
BstSNI TACGTA 1 cut(s) 1505
BstUI CGCG 1 cut(s) 1908
BstV1I GCAGC 2 cut(s) 1245, 1382
BstV2I GAAGAC 1 cut(s) 1756
BstX2I RGATCY 3 cut(s) 33, 577, 1096
BstXI CCANNNNNNTGG 1 cut(s) 1795
BstYI RGATCY 3 cut(s) 33, 577, 1096
BstZ17I GTATAC 1 cut(s) 795
BsuI GTATCC 1 cut(s) 771
BsuRI GGCC 1 cut(s) 1787
BtgI CCRYGG 1 cut(s) 1864
BtsCI GGATG 7 cut(s) 147, 835, 1083, 1408, 1681, 1780, 1818
BtsI GCAGTG 1 cut(s) 1478
BtsIMutI CAGTG 4 cut(s) 746, 1104, 1478, 1581
BveI ACCTGC 2 cut(s) 611, 1632
Cac8I GCNNGC 2 cut(s) 454, 474
CaiI CAGNNNCTG 1 cut(s) 1106
CciI TCATGA 1 cut(s) 1315
CfoI GCGC 1 cut(s) 1834
Csp6I GTAC 2 cut(s) 558, 1660
CviAII CATG 9 cut(s) 18, 453, 595, 973, 1000, 1142, 1178, 1316, 1865
CviQI GTAC 2 cut(s) 558, 1660
DdeI CTNAG 4 cut(s) 341, 364, 407, 1398
DpnI GATC 9 cut(s) 35, 579, 888, 971, 1098, 1168, 1187, 1524, 1862
DpnII GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
DraI TTTAAA 1 cut(s) 1852
EaeI YGGCCR 1 cut(s) 1785
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco105I TACGTA 1 cut(s) 1505
Eco130I CCWWGG 2 cut(s) 1713, 1864
Eco31I GGTCTC 1 cut(s) 410
Eco32I GATATC 1 cut(s) 1426
Eco57I CTGAAG 2 cut(s) 117, 582
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 329, 1414
EcoRV GATATC 1 cut(s) 1426
EcoT14I CCWWGG 2 cut(s) 1713, 1864
EcoT22I ATGCAT 3 cut(s) 6, 856, 955
ErhI CCWWGG 2 cut(s) 1713, 1864
FaeI CATG 9 cut(s) 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868
FatI CATG 9 cut(s) 17, 452, 594, 972, 999, 1141, 1177, 1315, 1864
FbaI TGATCA 1 cut(s) 1185
FblI GTMKAC 1 cut(s) 794
Fnu4HI GCNGC 2 cut(s) 1259, 1371
FokI GGATG 7 cut(s) 134, 842, 1090, 1415, 1688, 1787, 1825
Fsp4HI GCNGC 2 cut(s) 1259, 1371
FspBI CTAG 3 cut(s) 311, 1334, 1631
GlaI GCGC 1 cut(s) 1833
GluI GCNGC 2 cut(s) 1259, 1371
GsaI CCCAGC 1 cut(s) 684
HaeIII GGCC 1 cut(s) 1787
HapII CCGG 1 cut(s) 995
HhaI GCGC 1 cut(s) 1834
Hin1II CATG 9 cut(s) 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868
Hin6I GCGC 1 cut(s) 1832
HinP1I GCGC 1 cut(s) 1832
HindIII AAGCTT 1 cut(s) 1901
HinfI GANTC 6 cut(s) 155, 1160, 1445, 1586, 1610, 1733
HpaII CCGG 1 cut(s) 995
HphI GGTGA 3 cut(s) 513, 1595, 1790
Hpy166II GTNNAC 3 cut(s) 558, 795, 1037
Hpy8I GTNNAC 3 cut(s) 558, 795, 1037
HpyAV CCTTC 8 cut(s) 284, 762, 872, 933, 1039, 1229, 1244, 1574
HpyCH4III ACNGT 2 cut(s) 1108, 1576
HpyCH4IV ACGT 1 cut(s) 1504
HpyF3I CTNAG 4 cut(s) 341, 364, 407, 1398
HpySE526I ACGT 1 cut(s) 1504
Hsp92II CATG 9 cut(s) 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868
HspAI GCGC 1 cut(s) 1832
Ksp22I TGATCA 1 cut(s) 1185
Kzo9I GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
LmnI GCTCC 3 cut(s) 461, 1285, 1627
Lsp1109I GCAGC 2 cut(s) 1245, 1382
LweI GCATC 4 cut(s) 13, 940, 981, 1143
MaeI CTAG 3 cut(s) 311, 1334, 1631
MaeII ACGT 1 cut(s) 1504
MaeIII GTNAC 4 cut(s) 569, 898, 1559, 1742
MalI GATC 9 cut(s) 35, 579, 888, 971, 1098, 1168, 1187, 1524, 1862
MboI GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
MfeI CAATTG 1 cut(s) 382
MflI RGATCY 3 cut(s) 33, 577, 1096
MhlI GDGCHC 1 cut(s) 319
MlsI TGGCCA 1 cut(s) 1787
MluNI TGGCCA 1 cut(s) 1787
MlyI GAGTC 3 cut(s) 149, 1169, 1454
MmeI TCCRAC 3 cut(s) 924, 1074, 1776
MnlI CCTC 9 cut(s) 315, 373, 751, 977, 1048, 1082, 1138, 1468, 1765
Mox20I TGGCCA 1 cut(s) 1787
Mph1103I ATGCAT 3 cut(s) 6, 856, 955
MscI TGGCCA 1 cut(s) 1787
MseI TTAA 7 cut(s) 249, 291, 603, 801, 813, 1515, 1851
MslI CAYNNNNRTG 2 cut(s) 312, 786
Msp20I TGGCCA 1 cut(s) 1787
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 995
MspR9I CCNGG 2 cut(s) 331, 1416
MunI CAATTG 1 cut(s) 382
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 2 cut(s) 331, 1416
MvnI CGCG 1 cut(s) 1908
NcoI CCATGG 1 cut(s) 1864
NdeII GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
NlaIII CATG 9 cut(s) 21, 456, 598, 976, 1003, 1145, 1181, 1319, 1868
NlaIV GGNNCC 3 cut(s) 579, 1098, 1623
NmeAIII GCCGAG 1 cut(s) 1519
NmuCI GTSAC 2 cut(s) 898, 1559
NsiI ATGCAT 3 cut(s) 6, 856, 955
NspI RCATGY 3 cut(s) 21, 456, 598
PaeI GCATGC 1 cut(s) 456
PagI TCATGA 1 cut(s) 1315
PciI ACATGT 1 cut(s) 17
PctI GAATGC 1 cut(s) 856
PfeI GAWTC 3 cut(s) 1586, 1610, 1733
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 2 cut(s) 1260, 1372
PleI GAGTC 3 cut(s) 149, 1168, 1453
PpsI GAGTC 3 cut(s) 149, 1168, 1453
Ppu21I YACGTR 1 cut(s) 1505
PscI ACATGT 1 cut(s) 17
PshBI ATTAAT 1 cut(s) 813
Psp6I CCWGG 2 cut(s) 329, 1414
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 2 cut(s) 329, 1414
PspN4I GGNNCC 3 cut(s) 579, 1098, 1623
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 3 cut(s) 33, 577, 1096
RsaI GTAC 2 cut(s) 559, 1661
RsaNI GTAC 2 cut(s) 558, 1660
RseI CAYNNNNRTG 2 cut(s) 312, 786
SaqAI TTAA 7 cut(s) 249, 291, 603, 801, 813, 1515, 1851
SatI GCNGC 2 cut(s) 1259, 1371
Sau3AI GATC 9 cut(s) 33, 577, 886, 969, 1096, 1166, 1185, 1522, 1860
SchI GAGTC 3 cut(s) 149, 1169, 1454
ScrFI CCNGG 2 cut(s) 331, 1416
SduI GDGCHC 1 cut(s) 319
SfaNI GCATC 4 cut(s) 13, 940, 981, 1143
SfcI CTRYAG 1 cut(s) 140
SmiI ATTTAAAT 1 cut(s) 1852
SmiMI CAYNNNNRTG 2 cut(s) 312, 786
SmlI CTYRAG 2 cut(s) 248, 318
SmoI CTYRAG 2 cut(s) 248, 318
SnaBI TACGTA 1 cut(s) 1505
SphI GCATGC 1 cut(s) 456
SsiI CCGC 1 cut(s) 470
SspI AATATT 1 cut(s) 805
SspMI CTAG 3 cut(s) 311, 1334, 1631
StyD4I CCNGG 2 cut(s) 329, 1414
StyI CCWWGG 2 cut(s) 1713, 1864
SwaI ATTTAAAT 1 cut(s) 1852
TaaI ACNGT 2 cut(s) 1108, 1576
TaiI ACGT 1 cut(s) 1507
TaqI TCGA 2 cut(s) 1165, 1360
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 3 cut(s) 1586, 1610, 1733
Tru1I TTAA 7 cut(s) 249, 291, 603, 801, 813, 1515, 1851
Tru9I TTAA 7 cut(s) 249, 291, 603, 801, 813, 1515, 1851
TscAI CASTG 4 cut(s) 746, 1111, 1485, 1581
TseFI GTSAC 2 cut(s) 898, 1559
TseI GCWGC 2 cut(s) 1258, 1370
Tsp45I GTSAC 2 cut(s) 898, 1559
TspRI CASTG 4 cut(s) 746, 1111, 1485, 1581
Van91I CCANNNNNTGG 1 cut(s) 547
Vha464I CTTAAG 1 cut(s) 248
VspI ATTAAT 1 cut(s) 813
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 4 cut(s) 324, 544, 1273, 1718
XbaI TCTAGA 1 cut(s) 1630
XceI RCATGY 3 cut(s) 21, 456, 598
XmiI GTMKAC 1 cut(s) 794
XspI CTAG 3 cut(s) 311, 1334, 1631
Zsp2I ATGCAT 3 cut(s) 6, 856, 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.