Rh2CG620200

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
79502356 .. 79504257
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG620200.1

Sequence Viewer

Length: 1902 bp
ATGAATCGAGCTTCACGCTACTCTCCCTGTCAAACCAAAAAGCCATTCTTTAGTACCAGTTTCATACTAAAAATCTCAACTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTCTACAGACCATCCCAGTCTCTCCCTCCACATCAACTTCAAACCCCCTTTACCATTTTCTCCCCCAAACCCAAAACCCCAACAACATAGTCAATCTCATCTGCTCAGCCCTCAAGCAACCACAGACCCACCACCATCTTTCCCATCTCCAAAACCACCTCAAACCCCTTCTTCCCCATCTGGGTGGTCAACAAATCTCAAGGGTTCTGCTCAGGTTCCAGTCTGATCACTCCTCAGCTCTTGTTTTCTTCAACTGGGTCAAGCATGGTTTGGGCCTCAGACCCACCACCCAGAACTATTGCATTGCTCTTCATATATTAGCTTGCTCTAAAAAGTTTCCCCAGGCCATGAAATTGTTGTGTGAATTGATAGAGCTGGTTAGGGATGTGGGTGCGTCATCCAAAGATGACATTTTTCATAGTTTGGTTGTTTGTGCTCAAGATTGTAACTGGGATCCAGTCATCTTTGACATGCTCATTAAGGCTTATGTGAAAGCAGGTATGATTAGAGATGGTTTTATCAGTTTTAAGAAGACACTAGAAGTCGGATTTGTTCCGAGTGTGATTGCTTGCAATTGTCTTATGAATGGGTTGGTGAGGTTGAATTGTTTGGATCAGTGCTGGGAGGTGTATGAGGATATGGGAAGGATTGGGGTACGCCCAAATGTGTATACTTTTAATATTTTGACTAATGTTTTGTGCAAGGATGGAGATGTTGCGAAAGTGAATGCTTTTTTGGATAGAATGGAAGAAGAAGGATTTGATCCCGATATCGTGACTTATAATACTCTGATTAGTAGCTATTGTAGGAAAGGAAGGTTGGGAGATGCGTTTTATTTGTATAAGATCATGTTTAGGAGGGGTGTGATGCCGGATTTAGTGTCGTACACTGCCTTGATGCACGGTCTTTGTAAACAAGGGAATGTGAGGGAGGCTCATCAGCTTTTTCATCGGATGGTTCATAGAGGGTTGTATCCAGACATTGTGTCGTATAACACTCTTATTGGTGGTTATTGCAATGAGGGGAAGATGCCAGAGTGTAAGTTATTGTTGTATGAGATGATAAAAAATGGTCTTCGTCCAGATGATTTCACTTGTAGGATGGTCACAGAAGGATTTGGCAAAGAAGGCAAGTTGCTCTCTGCACTGAATTTGGTAGTGGAGCTTCAACAATTTCAAGTGTCTATTTCTCGTCGCATTTATGATTATCTAATAGTTGCATTGTGTCAAGAAAATCGGCCGTTTGCAGCTAAAAGTCTATTAGAAAGAAGTTCTCAAGATGGTTATTTGCCTGATTTGGATATCTATAACAAATTGATGGAGTCCCTCTGCCAGAGCAATAATGTGACTGAGGCAAAGGTTTTGAAAGTCGAGATGGGTTGTAAGAACATCAAACCTAATCTTATCACATATAAAGCTCTAATATGCTGTCTATGTCGTATAAACAGAACAGTGGAAGGTGAGTCGTTACTGAAAGAGATGGTTGAATCTGGTTTGCTGCCAGATTCAGAAATATGCAGGTCATTGATAAAGGGTTACTGCAAAGAAAGGGATGTTGCTAAAGCAGAATCATTGTTAAGGTTCTTTGCCAAAGAATTTCAAGTTTTTGATTCTGAAAGTTACAATGAACTTGTCAAAATTTTCTGTCAGGATGGTGATATGGCTAAGTTGTTGAAGTTACAAGATAGAATGATGAAAGTGGGTTTTGCACCAAATAGCCTTACACTCAAGTATGCCATCCATGGATTATGGAAAACTACCAGACCAGAGAAAGATAATCTTCTTCTGGAATAA

Protein Analysis

633

Amino Acids

71.83

Weight (kDa)

8.61

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 222 - 271 3.2e-14 PPR repeat family
PPR_long PF17177 238 - 338 8.9e-08 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 246 - 304 1.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 254 - 286 2.2e-06 PPR repeat
PPR_1 PF12854 289 - 320 2.9e-12 PPR repeat
PPR_2 PF13041 292 - 341 8.7e-19 PPR repeat family
PPR PF01535 295 - 325 3.8e-08 PPR repeat
PPR_3 PF13812 320 - 376 1.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 323 - 356 2.6e-11 PPR repeat
PPR_2 PF13041 327 - 365 2.2e-11 PPR repeat family
PPR PF01535 330 - 360 2.4e-08 PPR repeat
PPR_1 PF12854 358 - 382 2.5e-07 PPR repeat
PPR_2 PF13041 362 - 409 3.5e-12 PPR repeat family
PPR PF01535 365 - 395 4.9e-08 PPR repeat
PPR_2 PF13041 467 - 516 3.2e-10 PPR repeat family
PPR_1 PF12854 498 - 531 7.2e-07 PPR repeat
PPR_2 PF13041 505 - 551 1.4e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40400 AT5G40400
fragaria_vesca FvH4_5g31860
malus_domestica MD09G1028300.v1.1
prunus_persica Prupe.3G290200_v2.0.a1
pyrus_communis pycom111g02230
rosa_chinensis RchiOBHm_Chr2g0173011
rosa_laevigata RLG00000022149
rosa_multiflora Rmu_sc0012743.1_g000003
rosa_roxburghii Rroxscaffold_2G00079320
rosa_samantha Rh2AG641500 Rh2AG644000 Rh2BG654800 Rh2CG620200 Rh2DG668400
rosa_wichuraiana Rw2G052920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 891
Acc36I ACCTGC 2 cut(s) 596, 1617
AccI GTMKAC 1 cut(s) 779
AclWI GGATC 4 cut(s) 557, 570, 729, 866
AcoI YGGCCR 1 cut(s) 1346
AcsI RAATTY 3 cut(s) 1258, 1703, 1746
AfaI GTAC 3 cut(s) 55, 765, 995
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 9 cut(s) 150, 361, 712, 1277, 1286, 1474, 1595, 1709, 1783
AhdI GACNNNNNGTC 1 cut(s) 1093
AjnI CCWGG 1 cut(s) 450
AjuI GAANNNNNNNTTGG 6 cut(s) 29, 61, 827, 859, 911, 943
AluBI AGCT 9 cut(s) 11, 347, 431, 484, 909, 1051, 1273, 1358, 1526
AluI AGCT 9 cut(s) 11, 347, 431, 484, 909, 1051, 1273, 1358, 1526
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 4 cut(s) 557, 570, 729, 866
AoxI GGCC 3 cut(s) 382, 453, 1346
ApeKI GCWGC 2 cut(s) 1355, 1606
ApoI RAATTY 3 cut(s) 1258, 1703, 1746
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 3 cut(s) 715, 1580, 1775
BamHI GGATCC 1 cut(s) 562
BarI GAAGNNNNNNTAC 2 cut(s) 1257, 1289
BbsI GAAGAC 2 cut(s) 647, 1175
Bbv12I GWGCWC 1 cut(s) 547
BbvCI CCTCAGC 1 cut(s) 343
BbvI GCAGC 2 cut(s) 1367, 1593
BceAI ACGGC 1 cut(s) 1333
BciT130I CCWGG 1 cut(s) 452
BciVI GTATCC 1 cut(s) 1092
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 1 cut(s) 113
BfuAI ACCTGC 2 cut(s) 596, 1617
BfuI GTATCC 1 cut(s) 1092
BisI GCNGC 2 cut(s) 1356, 1607
BlpI GCTNAGC 1 cut(s) 214
BlsI GCNGC 2 cut(s) 1357, 1608
Bme1390I CCNGG 1 cut(s) 452
BmeRI GACNNNNNGTC 1 cut(s) 1093
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 2 cut(s) 326, 564
BmrFI CCNGG 1 cut(s) 452
BmrI ACTGGG 3 cut(s) 119, 373, 568
BmsI GCATC 4 cut(s) 925, 966, 996, 1128
BmuI ACTGGG 3 cut(s) 119, 373, 568
BpiI GAAGAC 2 cut(s) 647, 1175
BplI GAGNNNNNCTC 2 cut(s) 1027, 1059
Bpu10I CCTNAGC 2 cut(s) 320, 343
Bpu1102I GCTNAGC 1 cut(s) 214
BpuEI CTTGAG 5 cut(s) 206, 292, 531, 1368, 1820
BsaJI CCNNGG 2 cut(s) 450, 1849
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 6 cut(s) 57, 125, 328, 368, 563, 566
Bse3DI GCAATG 2 cut(s) 411, 1132
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 450, 1849
BseGI GGATG 9 cut(s) 120, 499, 506, 820, 1068, 1215, 1666, 1765, 1845
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 2 cut(s) 411, 1132
BseMII CTCAG 5 cut(s) 228, 334, 357, 400, 1449
BseNI ACTGG 6 cut(s) 57, 125, 328, 368, 563, 566
BseRI GAGGAG 1 cut(s) 331
BseX3I CGGCCG 1 cut(s) 1346
BseXI GCAGC 2 cut(s) 1367, 1593
BseYI CCCAGC 1 cut(s) 729
BsgI GTGCAG 1 cut(s) 1236
Bsh1285I CGRYCG 1 cut(s) 1349
BshFI GGCC 3 cut(s) 384, 455, 1348
BsiEI CGRYCG 1 cut(s) 1349
BsiHKAI GWGCWC 1 cut(s) 547
BsiSI CCGG 1 cut(s) 980
BslFI GGGAC 1 cut(s) 1417
BslI CCNNNNNNNGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 1417
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 3 cut(s) 384, 455, 1348
Bsp1286I GDGCHC 1 cut(s) 547
Bsp143I GATC 5 cut(s) 334, 562, 721, 871, 954
Bsp1720I GCTNAGC 1 cut(s) 214
Bsp19I CCATGG 1 cut(s) 1849
BspANI GGCC 3 cut(s) 384, 455, 1348
BspCNI CTCAG 5 cut(s) 227, 333, 356, 399, 1450
BspLI GGNNCC 2 cut(s) 326, 564
BspMI ACCTGC 2 cut(s) 596, 1617
BspPI GGATC 4 cut(s) 557, 570, 729, 866
BspQI GCTCTTC 1 cut(s) 423
BsrDI GCAATG 2 cut(s) 411, 1132
BsrI ACTGG 6 cut(s) 57, 125, 328, 368, 563, 566
BssECI CCNNGG 2 cut(s) 450, 1849
BssMI GATC 5 cut(s) 334, 562, 721, 871, 954
BssNAI GTATAC 1 cut(s) 780
BssT1I CCWWGG 1 cut(s) 1849
Bst1107I GTATAC 1 cut(s) 780
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 2 cut(s) 1013, 1561
Bst6I CTCTTC 2 cut(s) 91, 423
BstC8I GCNNGC 2 cut(s) 433, 679
BstDEI CTNAG 6 cut(s) 214, 320, 343, 386, 1458, 1773
BstDSI CCRYGG 1 cut(s) 1849
BstF5I GGATG 9 cut(s) 120, 499, 506, 820, 1068, 1215, 1666, 1765, 1845
BstKTI GATC 5 cut(s) 337, 565, 724, 874, 957
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 5 cut(s) 334, 562, 721, 871, 954
BstMCI CGRYCG 1 cut(s) 1349
BstMWI GCNNNNNNNGC 1 cut(s) 1236
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 450
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 2 cut(s) 1367, 1593
BstV2I GAAGAC 2 cut(s) 647, 1175
BstX2I RGATCY 1 cut(s) 562
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 780
BstZI CGGCCG 1 cut(s) 1346
BsuI GTATCC 1 cut(s) 1092
BsuRI GGCC 3 cut(s) 384, 455, 1348
BtgI CCRYGG 1 cut(s) 1849
BtsCI GGATG 9 cut(s) 120, 499, 506, 820, 1068, 1215, 1666, 1765, 1845
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 4 cut(s) 731, 996, 1253, 1566
BveI ACCTGC 2 cut(s) 596, 1617
Cac8I GCNNGC 2 cut(s) 433, 679
Cfr13I GGNCC 1 cut(s) 382
CseI GACGC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 54, 764, 994
CviAII CATG 5 cut(s) 374, 457, 580, 958, 1850
CviQI GTAC 3 cut(s) 54, 764, 994
DdeI CTNAG 6 cut(s) 214, 320, 343, 386, 1458, 1773
DpnI GATC 5 cut(s) 336, 564, 723, 873, 956
DpnII GATC 5 cut(s) 334, 562, 721, 871, 954
DriI GACNNNNNGTC 1 cut(s) 1093
EaeI YGGCCR 1 cut(s) 1346
EagI CGGCCG 1 cut(s) 1346
Eam1104I CTCTTC 2 cut(s) 91, 423
Eam1105I GACNNNNNGTC 1 cut(s) 1093
EarI CTCTTC 2 cut(s) 91, 423
EclXI CGGCCG 1 cut(s) 1346
Eco130I CCWWGG 1 cut(s) 1849
Eco32I GATATC 2 cut(s) 880, 1411
Eco52I CGGCCG 1 cut(s) 1346
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 2 cut(s) 880, 1411
EcoT14I CCWWGG 1 cut(s) 1849
ErhI CCWWGG 1 cut(s) 1849
FaeI CATG 5 cut(s) 377, 460, 583, 961, 1853
FalI AAGNNNNNCTT 3 cut(s) 32, 64, 1872
FaqI GGGAC 1 cut(s) 1417
FatI CATG 5 cut(s) 373, 456, 579, 957, 1849
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 2 cut(s) 1356, 1607
FokI GGATG 9 cut(s) 107, 493, 506, 827, 1075, 1222, 1673, 1772, 1832
Fsp4HI GCNGC 2 cut(s) 1356, 1607
FspBI CTAG 1 cut(s) 647
GluI GCNGC 2 cut(s) 1356, 1607
GsaI CCCAGC 1 cut(s) 733
HaeIII GGCC 3 cut(s) 384, 455, 1348
HapII CCGG 1 cut(s) 980
HgaI GACGC 1 cut(s) 492
Hin1II CATG 5 cut(s) 377, 460, 583, 961, 1853
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HinfI GANTC 7 cut(s) 4, 1430, 1571, 1595, 1613, 1676, 1718
HpaII CCGG 1 cut(s) 980
HphI GGTGA 3 cut(s) 715, 1580, 1775
Hpy166II GTNNAC 4 cut(s) 299, 780, 996, 1022
Hpy188I TCNGA 8 cut(s) 334, 389, 656, 666, 900, 1062, 1618, 1723
Hpy8I GTNNAC 4 cut(s) 299, 780, 996, 1022
Hpy99I CGWCG 1 cut(s) 1305
HpyAV CCTTC 7 cut(s) 287, 747, 857, 918, 1214, 1229, 1559
HpyCH4III ACNGT 2 cut(s) 1013, 1561
HpyF10VI GCNNNNNNNGC 1 cut(s) 1236
HpyF3I CTNAG 6 cut(s) 214, 320, 343, 386, 1458, 1773
Hsp92II CATG 5 cut(s) 377, 460, 583, 961, 1853
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 5 cut(s) 334, 562, 721, 871, 954
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 1270
Lsp1109I GCAGC 2 cut(s) 1367, 1593
LweI GCATC 4 cut(s) 925, 966, 996, 1128
MaeI CTAG 1 cut(s) 647
MaeIII GTNAC 8 cut(s) 554, 883, 1213, 1453, 1575, 1643, 1727, 1785
MalI GATC 5 cut(s) 336, 564, 723, 873, 956
MboI GATC 5 cut(s) 334, 562, 721, 871, 954
MfeI CAATTG 1 cut(s) 682
MflI RGATCY 1 cut(s) 562
MhlI GDGCHC 1 cut(s) 547
MluCI AATT 9 cut(s) 461, 473, 682, 712, 1258, 1280, 1421, 1703, 1746
MlyI GAGTC 2 cut(s) 1439, 1580
MmeI TCCRAC 1 cut(s) 634
MseI TTAA 4 cut(s) 588, 636, 786, 1685
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 980
MspR9I CCNGG 1 cut(s) 452
MunI CAATTG 1 cut(s) 682
Mva1269I GAATGC 1 cut(s) 841
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 1236
NcoI CCATGG 1 cut(s) 1849
NdeII GATC 5 cut(s) 334, 562, 721, 871, 954
NlaIII CATG 5 cut(s) 377, 460, 583, 961, 1853
NlaIV GGNNCC 2 cut(s) 326, 564
NmuCI GTSAC 3 cut(s) 883, 1213, 1453
NspI RCATGY 1 cut(s) 583
PciSI GCTCTTC 1 cut(s) 423
PctI GAATGC 1 cut(s) 841
PfeI GAWTC 5 cut(s) 4, 1595, 1613, 1676, 1718
PkrI GCNGC 2 cut(s) 1357, 1608
PleI GAGTC 2 cut(s) 1438, 1579
PpsI GAGTC 2 cut(s) 1438, 1579
PsiI TTATAA 1 cut(s) 891
Psp6I CCWGG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 729
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 326, 564
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 3 cut(s) 55, 765, 995
RsaNI GTAC 3 cut(s) 54, 764, 994
RseI CAYNNNNRTG 1 cut(s) 291
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 588, 636, 786, 1685
SatI GCNGC 2 cut(s) 1356, 1607
Sau3AI GATC 5 cut(s) 334, 562, 721, 871, 954
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 2 cut(s) 1439, 1580
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 547
SfaNI GCATC 4 cut(s) 925, 966, 996, 1128
SfcI CTRYAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 5 cut(s) 221, 307, 546, 1383, 1835
SmoI CTYRAG 5 cut(s) 221, 307, 546, 1383, 1835
Sse9I AATT 9 cut(s) 461, 473, 682, 712, 1258, 1280, 1421, 1703, 1746
SspI AATATT 1 cut(s) 790
SspMI CTAG 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 1849
TaaI ACNGT 2 cut(s) 1013, 1561
TaqI TCGA 2 cut(s) 7, 1479
TasI AATT 9 cut(s) 461, 473, 682, 712, 1258, 1280, 1421, 1703, 1746
TfiI GAWTC 5 cut(s) 4, 1595, 1613, 1676, 1718
Tru1I TTAA 4 cut(s) 588, 636, 786, 1685
Tru9I TTAA 4 cut(s) 588, 636, 786, 1685
TscAI CASTG 4 cut(s) 731, 1003, 1260, 1566
TseFI GTSAC 3 cut(s) 883, 1213, 1453
TseI GCWGC 2 cut(s) 1355, 1606
Tsp45I GTSAC 3 cut(s) 883, 1213, 1453
TspRI CASTG 4 cut(s) 731, 1003, 1260, 1566
XapI RAATTY 3 cut(s) 1258, 1703, 1746
XceI RCATGY 1 cut(s) 583
XmiI GTMKAC 1 cut(s) 779
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.