FvH4_5g33760

Belongs to the glutamyl-tRNA reductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
24446534 .. 24450605
4072 bp
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UTR
Exon/CDS
Intron
FvH4_5g33760.t1

Sequence Viewer

Length: 1455 bp
ATGGCGGTCTCGACCAGCTTTGCAGGAGCCAAATTGGAGGCTCTTTTCTTGAAGGCATCGGCCTCTTCTTCTTCTTCCTCCAATGCTTCGTATTTGCCGAGGCCCATTTGGACCAGAAGGGTTCAGAGAGGAGTCAGGTGCGAAGTCGCGGCCTCTGATGTTGCTCAGACTGGCTCTTCTTCCAATGTCTCGGCTCTTGAGCAGCTCAAGACTTCTGCTGCTGACAGATATACAAAGGAGAGAAGCAGCATTGTGGTCATTGGGCTTAGTATTCACACAACACCTGTTGAGATGCGTGAAAAACTAGCCATTCCAGAAGCTGAATGGCCTCGAGCTATTGGGGAGCTGTGTGGCTTAAATCATATTGAAGAAGCTGCTGTTCTTAGCACCTGCAACAGGATGGAGATATATGTTGTAGCTCTATCTCAGCATCGTGGAGTCAAAGAAGTGACTGAATGGATGTCAAAGACAAGCGGTGTCCCTGTTTCTGAGCTATGCCAGCACCGGTTCCTATTGTATAACAATGATGCTACACAACATCTCTTTGAAGTATCAGCAGGTCTCGACTCTCTTGTCCTTGGAGAAGTTTCTGTGAGCTCTGCTGCTGTTGAACTTGCCTTGATGAAGCTTCCTGAACCCTCTCATGCTACTGCTAGAATGTTAATTATTGGTGCGGGGAAAATGGGGAAGCTTGTGATCAAACATTTGGTATCCAAAGGTTGCACAAAGATGGTTGTTGTAAATAGGAGCGAGGAGAGAGTAGCAGCCATCCGTGAAGAAATGGAGGGTGTTGAGATAATCTACAAGCCCCTCACGGAAATGCTCGCCAGTGCAGCCGAGGCAGATGTGATTTTTACAAGCACTGCATCAGAAACCCCATTATTTTTCAAAGAAAATGTGAAAGACCTCCCTGCTGTTGGTCCAGAGACTGGGGGTTTGAGGCTATTCGTCGATATCTCTGTGCCTAGGAATGTGAGCTCATGTGTTGCAGATGTTGATGGTGCTAAAGTTTACAATGTTGATGACCTTAAGGAGGTTGTGGCTGCTAACAAGGAGGATCGTATCCGGAAAGCTATGGAAGCTCAATCAATTATTACTGAAGAATCAAAGCAATTTGAATCATGGAGAGACTCATTGGAGACAGTTCCTACCATCAAGAAATTAAGAGCTTATGCGGAAAGAATCAGAGTTGCTGAGCTAGACAAATGCTTATCAAAAATGGGTGATGACATAACAAAGAAAACTAGAAAAGCTGTGGATGATCTTAGCCGAGGTATTGTGAACAAGCTCCTTCATGGTCCAATGCAGCACTTACGATGTGATGGGAGTGACAGCCGAACTTTGAGTGAGACCCTTGAAAATATGCATGCTCTTAACAGAATGTTCAGTCTTGAGACAGAAATATCTGTGTTGGAGCAGAAGATTCGAGCTAAGGTGGAACAAACCCAGAAGTAA

Protein Analysis

485

Amino Acids

53.16

Weight (kDa)

6.42

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GlutR_N PF05201 87 - 197 1.8e-33 Glutamyl-tRNAGlu reductase, N-terminal domain
Shikimate_DH PF01488 205 - 346 6.8e-43 Shikimate / quinate 5-dehydrogenase
F420_oxidored PF03807 222 - 288 1e-06 NADP oxidoreductase coenzyme F420-dependent
GlutR_dimer PF00745 360 - 464 5e-28 Glutamyl-tRNAGlu reductase, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 398
AasI GACNNNNNNGTC 1 cut(s) 572
Acc36I ACCTGC 2 cut(s) 398, 548
AccB7I CCANNNNNTGG 1 cut(s) 929
AccII CGCG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 1065
AciI CCGC 5 cut(s) 5, 149, 474, 674, 1175
AclWI GGATC 1 cut(s) 1065
AcuI CTGAAG 1 cut(s) 1119
AfiI CCNNNNNNNGG 4 cut(s) 396, 917, 929, 1033
AflII CTTAAG 1 cut(s) 1028
AgeI ACCGGT 1 cut(s) 504
AgsI TTSAA 7 cut(s) 52, 368, 548, 611, 889, 1118, 1358
Alw21I GWGCWC 2 cut(s) 599, 980
Alw26I GTCTC 8 cut(s) 13, 193, 566, 920, 1122, 1133, 1343, 1388
AlwI GGATC 1 cut(s) 1065
AlwNI CAGNNNCTG 2 cut(s) 320, 929
Ama87I CYCGRG 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 1065
AoxI GGCC 4 cut(s) 60, 101, 150, 326
ApeKI GCWGC 9 cut(s) 202, 218, 246, 374, 602, 764, 833, 1043, 1306
ArsI GACNNNNNNTTYG 2 cut(s) 919, 951
AsiGI ACCGGT 1 cut(s) 504
AspA2I CCTAGG 1 cut(s) 965
AspS9I GGNCC 4 cut(s) 102, 111, 920, 1298
AsuHPI GGTGA 1 cut(s) 1235
AvaI CYCGRG 1 cut(s) 330
AvaII GGWCC 3 cut(s) 111, 920, 1298
AvrII CCTAGG 1 cut(s) 965
BanII GRGCYC 2 cut(s) 599, 980
Bbv12I GWGCWC 2 cut(s) 599, 980
BbvI GCAGC 9 cut(s) 205, 214, 258, 361, 589, 776, 845, 1030, 1318
BccI CCATC 6 cut(s) 394, 724, 776, 992, 1160, 1316
BcgI CGANNNNNNTGC 2 cut(s) 1406, 1440
BciVI GTATCC 2 cut(s) 721, 1073
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 8 cut(s) 13, 193, 566, 920, 1122, 1133, 1343, 1388
BfaI CTAG 5 cut(s) 305, 654, 966, 1199, 1245
BfrI CTTAAG 1 cut(s) 1028
BfuAI ACCTGC 2 cut(s) 398, 548
BfuI GTATCC 2 cut(s) 721, 1073
BlnI CCTAGG 1 cut(s) 965
BlpI GCTNAGC 1 cut(s) 1194
Bme18I GGWCC 3 cut(s) 111, 920, 1298
BmeT110I CYCGRG 1 cut(s) 330
BmgT120I GGNCC 4 cut(s) 102, 111, 920, 1298
BmiI GGNNCC 2 cut(s) 28, 509
BmrI ACTGGG 1 cut(s) 939
BmsI GCATC 5 cut(s) 65, 282, 439, 517, 875
BmuI ACTGGG 1 cut(s) 939
Bpu10I CCTNAGC 1 cut(s) 1431
Bpu1102I GCTNAGC 1 cut(s) 1194
BpuEI CTTGAG 3 cut(s) 191, 218, 1412
BsaI GGTCTC 3 cut(s) 13, 566, 1343
BsaJI CCNNGG 5 cut(s) 98, 577, 837, 965, 1270
BsaWI WCCGGW 2 cut(s) 504, 1065
Bsc4I CCNNNNNNNGG 4 cut(s) 396, 917, 929, 1033
Bse118I RCCGGY 1 cut(s) 504
Bse1I ACTGG 3 cut(s) 175, 828, 934
BseAI TCCGGA 1 cut(s) 1065
BseDI CCNNGG 5 cut(s) 98, 577, 837, 965, 1270
BseGI GGATG 4 cut(s) 405, 465, 768, 1264
BseLI CCNNNNNNNGG 4 cut(s) 396, 917, 929, 1033
BseMII CTCAG 4 cut(s) 179, 440, 480, 1185
BseNI ACTGG 3 cut(s) 175, 828, 934
BseRI GAGGAG 2 cut(s) 144, 767
BseXI GCAGC 9 cut(s) 205, 214, 258, 361, 589, 776, 845, 1030, 1318
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 4 cut(s) 62, 103, 152, 328
BshTI ACCGGT 1 cut(s) 504
BsiHKAI GWGCWC 2 cut(s) 599, 980
BsiHKCI CYCGRG 1 cut(s) 330
BsiSI CCGG 2 cut(s) 505, 1066
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 4 cut(s) 396, 917, 929, 1033
BsmAI GTCTC 8 cut(s) 13, 193, 566, 920, 1122, 1133, 1343, 1388
BsmFI GGGAC 1 cut(s) 464
BsnI GGCC 4 cut(s) 62, 103, 152, 328
Bso31I GGTCTC 3 cut(s) 13, 566, 1343
BsoBI CYCGRG 1 cut(s) 330
Bsp1286I GDGCHC 2 cut(s) 599, 980
Bsp13I TCCGGA 1 cut(s) 1065
Bsp143I GATC 3 cut(s) 696, 1057, 1261
Bsp1720I GCTNAGC 1 cut(s) 1194
BspACI CCGC 5 cut(s) 5, 149, 474, 674, 1175
BspANI GGCC 4 cut(s) 62, 103, 152, 328
BspCNI CTCAG 4 cut(s) 178, 439, 481, 1186
BspEI TCCGGA 1 cut(s) 1065
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 28, 509
BspMI ACCTGC 2 cut(s) 398, 548
BspPI GGATC 1 cut(s) 1065
BspQI GCTCTTC 1 cut(s) 181
BspTI CTTAAG 1 cut(s) 1028
BspTNI GGTCTC 3 cut(s) 13, 566, 1343
BsrFI RCCGGY 1 cut(s) 504
BsrI ACTGG 3 cut(s) 175, 828, 934
BssAI RCCGGY 1 cut(s) 504
BssECI CCNNGG 5 cut(s) 98, 577, 837, 965, 1270
BssMI GATC 3 cut(s) 696, 1057, 1261
BssT1I CCWWGG 2 cut(s) 577, 965
Bst4CI ACNGT 1 cut(s) 1144
Bst6I CTCTTC 2 cut(s) 70, 181
BstAFI CTTAAG 1 cut(s) 1028
BstC8I GCNNGC 3 cut(s) 500, 825, 1368
BstDEI CTNAG 8 cut(s) 165, 266, 383, 426, 489, 1194, 1265, 1431
BstENI CCTNNNNNAGG 2 cut(s) 394, 1031
BstF5I GGATG 4 cut(s) 405, 465, 768, 1264
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 3 cut(s) 699, 1060, 1264
BstMAI GTCTC 8 cut(s) 13, 193, 566, 920, 1122, 1133, 1343, 1388
BstMBI GATC 3 cut(s) 696, 1057, 1261
BstMWI GCNNNNNNNGC 4 cut(s) 499, 833, 839, 1079
BstNSI RCATGY 1 cut(s) 1370
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 9 cut(s) 205, 214, 258, 361, 589, 776, 845, 1030, 1318
BsuI GTATCC 2 cut(s) 721, 1073
BsuRI GGCC 4 cut(s) 62, 103, 152, 328
BtsCI GGATG 4 cut(s) 405, 465, 768, 1264
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 2 cut(s) 835, 861
BveI ACCTGC 2 cut(s) 398, 548
Cac8I GCNNGC 3 cut(s) 500, 825, 1368
CaiI CAGNNNCTG 2 cut(s) 320, 929
Cfr10I RCCGGY 1 cut(s) 504
Cfr13I GGNCC 4 cut(s) 102, 111, 920, 1298
CspAI ACCGGT 1 cut(s) 504
CviAII CATG 5 cut(s) 644, 981, 1122, 1295, 1367
DdeI CTNAG 8 cut(s) 165, 266, 383, 426, 489, 1194, 1265, 1431
DpnI GATC 3 cut(s) 698, 1059, 1263
DpnII GATC 3 cut(s) 696, 1057, 1261
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
Eam1104I CTCTTC 2 cut(s) 70, 181
EarI CTCTTC 2 cut(s) 70, 181
Ecl136II GAGCTC 2 cut(s) 597, 978
Eco130I CCWWGG 2 cut(s) 577, 965
Eco24I GRGCYC 2 cut(s) 599, 980
Eco31I GGTCTC 3 cut(s) 13, 566, 1343
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 3 cut(s) 111, 920, 1298
Eco53kI GAGCTC 2 cut(s) 597, 978
Eco57I CTGAAG 1 cut(s) 1119
Eco88I CYCGRG 1 cut(s) 330
EcoICRI GAGCTC 2 cut(s) 597, 978
EcoNI CCTNNNNNAGG 2 cut(s) 394, 1031
EcoRV GATATC 1 cut(s) 955
EcoT14I CCWWGG 2 cut(s) 577, 965
EcoT22I ATGCAT 1 cut(s) 1368
EcoT38I GRGCYC 2 cut(s) 599, 980
ErhI CCWWGG 2 cut(s) 577, 965
FaeI CATG 5 cut(s) 647, 984, 1125, 1298, 1370
FaqI GGGAC 1 cut(s) 464
FatI CATG 5 cut(s) 643, 980, 1121, 1294, 1366
FauI CCCGC 1 cut(s) 667
FbaI TGATCA 1 cut(s) 696
FokI GGATG 4 cut(s) 412, 472, 755, 1271
FriOI GRGCYC 2 cut(s) 599, 980
FspBI CTAG 5 cut(s) 305, 654, 966, 1199, 1245
HaeIII GGCC 4 cut(s) 62, 103, 152, 328
HapII CCGG 2 cut(s) 505, 1066
Hin1II CATG 5 cut(s) 647, 984, 1125, 1298, 1370
HindIII AAGCTT 2 cut(s) 626, 689
HinfI GANTC 8 cut(s) 132, 438, 566, 1103, 1118, 1130, 1182, 1423
HpaII CCGG 2 cut(s) 505, 1066
HphI GGTGA 1 cut(s) 1235
Hpy166II GTNNAC 2 cut(s) 1012, 1282
Hpy188I TCNGA 6 cut(s) 126, 157, 168, 490, 871, 1187
Hpy8I GTNNAC 2 cut(s) 1012, 1282
Hpy99I CGWCG 1 cut(s) 953
HpyAV CCTTC 3 cut(s) 46, 111, 1301
HpyCH4III ACNGT 1 cut(s) 1144
HpyCH4V TGCA 8 cut(s) 23, 393, 723, 833, 866, 989, 1306, 1366
HpyF10VI GCNNNNNNNGC 4 cut(s) 499, 833, 839, 1079
HpyF3I CTNAG 8 cut(s) 165, 266, 383, 426, 489, 1194, 1265, 1431
Hsp92II CATG 5 cut(s) 647, 984, 1125, 1298, 1370
Kpn2I TCCGGA 1 cut(s) 1065
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 3 cut(s) 696, 1057, 1261
LguI GCTCTTC 1 cut(s) 181
LmnI GCTCC 5 cut(s) 26, 343, 747, 1293, 1414
Lsp1109I GCAGC 9 cut(s) 205, 214, 258, 361, 589, 776, 845, 1030, 1318
LweI GCATC 5 cut(s) 65, 282, 439, 517, 875
MaeI CTAG 5 cut(s) 305, 654, 966, 1199, 1245
MaeIII GTNAC 2 cut(s) 448, 1328
MalI GATC 3 cut(s) 698, 1059, 1263
MboI GATC 3 cut(s) 696, 1057, 1261
MhlI GDGCHC 2 cut(s) 599, 980
MluCI AATT 5 cut(s) 32, 663, 1089, 1112, 1160
MlyI GAGTC 4 cut(s) 141, 447, 560, 1124
MmeI TCCRAC 1 cut(s) 1392
Mph1103I ATGCAT 1 cut(s) 1368
MroI TCCGGA 1 cut(s) 1065
MseI TTAA 5 cut(s) 356, 662, 1029, 1163, 1374
MslI CAYNNNNRTG 2 cut(s) 728, 818
MspCI CTTAAG 1 cut(s) 1028
MspI CCGG 2 cut(s) 505, 1066
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 4 cut(s) 499, 833, 839, 1079
NdeII GATC 3 cut(s) 696, 1057, 1261
NlaIII CATG 5 cut(s) 647, 984, 1125, 1298, 1370
NlaIV GGNNCC 2 cut(s) 28, 509
NmeAIII GCCGAG 4 cut(s) 123, 170, 862, 1295
NmuCI GTSAC 2 cut(s) 448, 1328
NsiI ATGCAT 1 cut(s) 1368
NspI RCATGY 1 cut(s) 1370
PaeI GCATGC 1 cut(s) 1370
PaeR7I CTCGAG 1 cut(s) 330
PaqCI CACCTGC 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PfeI GAWTC 4 cut(s) 1103, 1118, 1182, 1423
PflMI CCANNNNNTGG 1 cut(s) 929
PinAI ACCGGT 1 cut(s) 504
PleI GAGTC 4 cut(s) 140, 446, 560, 1124
PpsI GAGTC 4 cut(s) 140, 446, 560, 1124
Psp124BI GAGCTC 2 cut(s) 599, 980
PspN4I GGNNCC 2 cut(s) 28, 509
PspPI GGNCC 4 cut(s) 102, 111, 920, 1298
PspXI VCTCGAGB 1 cut(s) 330
PstNI CAGNNNCTG 2 cut(s) 320, 929
RseI CAYNNNNRTG 2 cut(s) 728, 818
SacI GAGCTC 2 cut(s) 599, 980
SapI GCTCTTC 1 cut(s) 181
SaqAI TTAA 5 cut(s) 356, 662, 1029, 1163, 1374
Sau3AI GATC 3 cut(s) 696, 1057, 1261
Sau96I GGNCC 4 cut(s) 102, 111, 920, 1298
SchI GAGTC 4 cut(s) 141, 447, 560, 1124
SduI GDGCHC 2 cut(s) 599, 980
SfaNI GCATC 5 cut(s) 65, 282, 439, 517, 875
Sfr274I CTCGAG 1 cut(s) 330
SinI GGWCC 3 cut(s) 111, 920, 1298
SlaI CTCGAG 1 cut(s) 330
SmiMI CAYNNNNRTG 2 cut(s) 728, 818
SmlI CTYRAG 5 cut(s) 197, 206, 330, 1028, 1391
SmoI CTYRAG 5 cut(s) 197, 206, 330, 1028, 1391
SphI GCATGC 1 cut(s) 1370
Sse9I AATT 5 cut(s) 32, 663, 1089, 1112, 1160
SsiI CCGC 5 cut(s) 5, 149, 474, 674, 1175
SspMI CTAG 5 cut(s) 305, 654, 966, 1199, 1245
SstI GAGCTC 2 cut(s) 599, 980
StyI CCWWGG 2 cut(s) 577, 965
TaaI ACNGT 1 cut(s) 1144
TaqI TCGA 5 cut(s) 11, 331, 564, 951, 1426
TasI AATT 5 cut(s) 32, 663, 1089, 1112, 1160
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 4 cut(s) 1103, 1118, 1182, 1423
Tru1I TTAA 5 cut(s) 356, 662, 1029, 1163, 1374
Tru9I TTAA 5 cut(s) 356, 662, 1029, 1163, 1374
TscAI CASTG 2 cut(s) 835, 868
TseFI GTSAC 2 cut(s) 448, 1328
TseI GCWGC 9 cut(s) 202, 218, 246, 374, 602, 764, 833, 1043, 1306
Tsp45I GTSAC 2 cut(s) 448, 1328
TspDTI ATGAA 2 cut(s) 638, 1283
TspGWI ACGGA 2 cut(s) 761, 830
TspRI CASTG 2 cut(s) 835, 868
Van91I CCANNNNNTGG 1 cut(s) 929
Vha464I CTTAAG 1 cut(s) 1028
VpaK11BI GGWCC 3 cut(s) 111, 920, 1298
XagI CCTNNNNNAGG 2 cut(s) 394, 1031
XceI RCATGY 1 cut(s) 1370
XcmI CCANNNNNNNNNTGG 1 cut(s) 321
XhoI CTCGAG 1 cut(s) 330
XmaJI CCTAGG 1 cut(s) 965
XspI CTAG 5 cut(s) 305, 654, 966, 1199, 1245
Zsp2I ATGCAT 1 cut(s) 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.