Rorug06G0046800

Belongs to the glutamyl-tRNA reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003375
Physical Location & Seq
Forward (+)
6168268 .. 6170320
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0046800.1

Sequence Viewer

Length: 372 bp
ATGGAGTCTCTCATTGAGAATAAGTTCAGGCTGGGACGGAAGATCGGTAGCGGCTTCTTTGGAGAGATCTATCTTGGTTCGTCTTTTGTACGAATATTGAGACAAGCGAAAGAGGTTGCGATTCAGCTGAGGCTCTGGTTCAAGACAAATCTTAAGCTTTGCAAAATTTGGTTTGAGATGGGCGAATATGGGAGAATGAGTTGGTTGGATTTGGAGAAGAGAATGATGGACTGCTCATATGCAAAGTGCACTCCGGGTATCACAGATTATGTAATGGCAGAGCTTGAAAAGTTGGGTCAGAAATATCGTGTGGCTTTGAGGTTGTCCGTGTCAAAAGAAGAGTTGCAGCTGTGGGATGAAGTCCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120
Pfam Domains
Protein Families
GlutR_N GlutR_dimer Shikimate_DH

Protein Analysis

123

Amino Acids

14.53

Weight (kDa)

9.19

Isoelectric Point (pI)

43.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 165
AfaI GTAC 1 cut(s) 90
AflII CTTAAG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 142, 287
AluBI AGCT 4 cut(s) 127, 157, 283, 349
AluI AGCT 4 cut(s) 127, 157, 283, 349
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 12, 94
Alw44I GTGCAC 1 cut(s) 247
ApaLI GTGCAC 1 cut(s) 247
ApeKI GCWGC 1 cut(s) 346
ApoI RAATTY 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 358
BccI CCATC 2 cut(s) 172, 220
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 12, 94
BfrI CTTAAG 1 cut(s) 152
BglII AGATCT 1 cut(s) 66
BisI GCNGC 2 cut(s) 52, 347
BlsI GCNGC 2 cut(s) 53, 348
Bme1390I CCNGG 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
BseGI GGATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 251
BseXI GCAGC 1 cut(s) 358
BseYI CCCAGC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 12, 94
BsmFI GGGAC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 3 cut(s) 42, 66, 365
BspACI CCGC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 152
BssMI GATC 3 cut(s) 42, 66, 365
Bst6I CTCTTC 2 cut(s) 212, 333
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 3 cut(s) 45, 69, 368
BstMAI GTCTC 2 cut(s) 12, 94
BstMBI GATC 3 cut(s) 42, 66, 365
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtsCI GGATG 1 cut(s) 361
Csp6I GTAC 1 cut(s) 89
CviJI RGCY 8 cut(s) 31, 54, 127, 133, 157, 283, 314, 349
CviKI_1 RGCY 8 cut(s) 31, 54, 127, 133, 157, 283, 314, 349
CviQI GTAC 1 cut(s) 89
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 44, 68, 367
DpnII GATC 3 cut(s) 42, 66, 365
Eam1104I CTCTTC 2 cut(s) 212, 333
EarI CTCTTC 2 cut(s) 212, 333
FaiI YATR 4 cut(s) 189, 238, 240, 270
FaqI GGGAC 1 cut(s) 48
FauNDI CATATG 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 52, 347
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 52, 347
GluI GCNGC 2 cut(s) 52, 347
GsaI CCCAGC 1 cut(s) 35
HapII CCGG 1 cut(s) 254
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 5, 121
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 2 cut(s) 300, 365
Hpy188III TCNNGA 2 cut(s) 142, 369
Hpy8I GTNNAC 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 162, 242, 249, 346
HpyF3I CTNAG 1 cut(s) 128
Kzo9I GATC 3 cut(s) 42, 66, 365
LpnPI CCDG 4 cut(s) 13, 17, 121, 267
Lsp1109I GCAGC 1 cut(s) 358
MalI GATC 3 cut(s) 44, 68, 367
MboI GATC 3 cut(s) 42, 66, 365
MboII GAAGA 3 cut(s) 52, 229, 350
MflI RGATCY 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 3 cut(s) 106, 123, 312
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 2 cut(s) 127, 349
MspCI CTTAAG 1 cut(s) 152
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 255
NciI CCSGG 1 cut(s) 255
NdeI CATATG 1 cut(s) 238
NdeII GATC 3 cut(s) 42, 66, 365
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 2 cut(s) 53, 348
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 66
PvuII CAGCTG 2 cut(s) 127, 349
RsaI GTAC 1 cut(s) 90
RsaNI GTAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 52, 347
Sau3AI GATC 3 cut(s) 42, 66, 365
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 251
SetI ASST 6 cut(s) 117, 129, 159, 285, 323, 351
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 253
TasI AATT 1 cut(s) 165
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseI GCWGC 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 2 cut(s) 52, 316
Vha464I CTTAAG 1 cut(s) 152
VneI GTGCAC 1 cut(s) 247
XapI RAATTY 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.