Rmu_sc0010747.1_g000010

Belongs to the glutamyl-tRNA reductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010747.1
Physical Location & Seq
Reverse (-)
28218 .. 30806
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010747.1_g000010.1.cds

Sequence Viewer

Length: 1617 bp
atggcggtctcgaccagcttcgccggagccaagttggaggctcttctgttgaaggcctcggcctcatcgtcttcttcttcttcctccactgcttcgtatttgccgaggcccatttggaccagaagggtccagagaggagtcaggtgcgaagtgacgacctctgatgctgcggttcaggctggtcagagtggctcttcttccaatgtctcggctctagagcagctcaagacttctgctgctgacaggtatacaaaggaaagaagcagcattgtggtcattgggcttagtattcacacaacacctgttgagatgcgtgaaaaactagccattccagaagcagaatggcctcgagccattggggagctgtgtggcttaaatcatatagaagaagctgctgttcttagcacctgtaacagaatggagatatatgttgtagctctatctcagcatcgtggtgtcaaagaagtgaccgaatggatgtcaaagacaagtggagtccctgtttctgagctatgcgagcaccggtttctattgtataacagtgatgctacacaacatctttttgaagtatcagcaggtctcgactctcttgtccttggagaaggtcaaattcttgcccaggtgaaacaggttgttaaagttgggcaaggagttgttggctttggcaggaacatcagcgggctgttcaagcatgcaatcactgtgggaaagcgtgttagaactgagactaatatcgctgcaggtgcagtttctgtaagctctgctgctgttgaacttgccttgatgaagcttcctgaaccctctcatgctactgctagaatgttggtgattggtgcgggaaaaatggggaagcttgtgatcaaacacttggtatccaaaggttgcacaaagatggtggttgtaaataggagtgaggagagagtagcagccatccgtgaagaactgaagggtgtagagataatctacaagcccctaacagaaatgctcaactgtgcagctgaggcagatgtaatttttacaagcactgcatcagaaaccccattatttttcaaagaggatgtgaaggaccttcctgcagttggtccagagactgggggtttgaggctatttgtcgatatttctgtccctaggaatgtgggctcatgtgttacagatgttgatggtgctaaagtttacaatgttgatgaccttaaggaggttgtggctgctaacaaagaggatcgcatcaggaaagcgatggaagctcaatcaattattaatgaagaatcgaagcaatttgaagcatggagggattcattggagacagttcctaccatcaagaaattaagagcttatgcagaaagaatcagagttgctgagctagacaaatgcttatcaaaaatgggtgatgacatatcaaagaaaacaagaagagctgtggatgatctcagccgaggtattgtgaacaagctccttcacggtccaatgcagcacttacgatgtgatgggagtgacagccgaactttgagtgagacccttgagaatatgcatgctcttaatagaatgttcagtcttgagacagaaatatctgtattggagcagaagattcgagctaaggtggaacaaacccagaagtaa

Protein Analysis

538

Amino Acids

58.63

Weight (kDa)

8.25

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 731
AasI GACNNNNNNGTC 1 cut(s) 590
Acc36I ACCTGC 2 cut(s) 566, 731
AccB7I CCANNNNNTGG 1 cut(s) 1091
AccI GTMKAC 1 cut(s) 248
AciI CCGC 4 cut(s) 5, 170, 678, 836
AclWI GGATC 1 cut(s) 1227
AcsI RAATTY 1 cut(s) 609
AcuI CTGAAG 1 cut(s) 965
AfiI CCNNNNNNNGG 3 cut(s) 1079, 1091, 1195
AflII CTTAAG 1 cut(s) 1190
AgeI ACCGGT 1 cut(s) 522
AgsI TTSAA 6 cut(s) 52, 566, 688, 773, 1051, 1280
AjnI CCWGG 1 cut(s) 618
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 8 cut(s) 13, 211, 584, 719, 1082, 1295, 1505, 1550
AlwI GGATC 1 cut(s) 1227
AlwNI CAGNNNCTG 2 cut(s) 752, 1091
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 4 cut(s) 54, 60, 107, 344
ApoI RAATTY 1 cut(s) 609
ArsI GACNNNNNNTTYG 2 cut(s) 1081, 1113
AseI ATTAAT 1 cut(s) 1257
AsiGI ACCGGT 1 cut(s) 522
AspA2I CCTAGG 1 cut(s) 1127
AspS9I GGNCC 6 cut(s) 108, 117, 127, 1066, 1082, 1460
AsuHPI GGTGA 3 cut(s) 634, 838, 1397
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 5 cut(s) 117, 127, 1066, 1082, 1460
AvrII CCTAGG 1 cut(s) 1127
BanII GRGCYC 1 cut(s) 1142
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 522
BbvCI CCTCAGC 1 cut(s) 999
BccI CCATC 6 cut(s) 886, 938, 1154, 1231, 1322, 1478
BcgI CGANNNNNNTGC 2 cut(s) 1568, 1602
BciT130I CCWGG 1 cut(s) 620
BciVI GTATCC 1 cut(s) 883
BclI TGATCA 1 cut(s) 858
BcoDI GTCTC 8 cut(s) 13, 211, 584, 719, 1082, 1295, 1505, 1550
BfaI CTAG 5 cut(s) 215, 323, 816, 1128, 1361
BfmI CTRYAG 2 cut(s) 738, 1074
BfrI CTTAAG 1 cut(s) 1190
BfuAI ACCTGC 2 cut(s) 566, 731
BfuI GTATCC 1 cut(s) 883
BlnI CCTAGG 1 cut(s) 1127
BlpI GCTNAGC 1 cut(s) 1356
Bme1390I CCNGG 1 cut(s) 620
Bme18I GGWCC 5 cut(s) 117, 127, 1066, 1082, 1460
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 6 cut(s) 108, 117, 127, 1066, 1082, 1460
BmiI GGNNCC 2 cut(s) 28, 128
BmrFI CCNGG 1 cut(s) 620
BmrI ACTGGG 1 cut(s) 1101
BmsI GCATC 6 cut(s) 154, 300, 457, 535, 1037, 1233
BmuI ACTGGG 1 cut(s) 1101
BpiI GAAGAC 1 cut(s) 63
Bpu10I CCTNAGC 2 cut(s) 999, 1593
Bpu1102I GCTNAGC 1 cut(s) 1356
BpuEI CTTGAG 3 cut(s) 209, 1538, 1574
BsaI GGTCTC 3 cut(s) 13, 584, 1505
BsaJI CCNNGG 6 cut(s) 57, 104, 595, 618, 1127, 1432
BsaWI WCCGGW 1 cut(s) 522
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bsc4I CCNNNNNNNGG 3 cut(s) 1079, 1091, 1195
Bse118I RCCGGY 1 cut(s) 522
Bse1I ACTGG 1 cut(s) 1096
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 6 cut(s) 57, 104, 595, 618, 1127, 1432
BseGI GGATG 4 cut(s) 483, 930, 1063, 1426
BseLI CCNNNNNNNGG 3 cut(s) 1079, 1091, 1195
BseMII CTCAG 6 cut(s) 458, 498, 714, 990, 1347, 1441
BseNI ACTGG 1 cut(s) 1096
BseRI GAGGAG 2 cut(s) 150, 929
BsgI GTGCAG 2 cut(s) 765, 1014
BshFI GGCC 4 cut(s) 56, 62, 109, 346
BshTI ACCGGT 1 cut(s) 522
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 2 cut(s) 24, 523
BslFI GGGAC 2 cut(s) 482, 1109
BslI CCNNNNNNNGG 3 cut(s) 1079, 1091, 1195
BsmAI GTCTC 8 cut(s) 13, 211, 584, 719, 1082, 1295, 1505, 1550
BsmFI GGGAC 2 cut(s) 482, 1109
BsnI GGCC 4 cut(s) 56, 62, 109, 346
Bso31I GGTCTC 3 cut(s) 13, 584, 1505
BsoBI CYCGRG 1 cut(s) 348
Bsp1286I GDGCHC 2 cut(s) 522, 1142
Bsp143I GATC 3 cut(s) 858, 1219, 1423
Bsp1720I GCTNAGC 1 cut(s) 1356
BspACI CCGC 4 cut(s) 5, 170, 678, 836
BspANI GGCC 4 cut(s) 56, 62, 109, 346
BspCNI CTCAG 6 cut(s) 457, 499, 715, 991, 1348, 1440
BspLI GGNNCC 2 cut(s) 28, 128
BspMAI CTGCAG 2 cut(s) 742, 1078
BspMI ACCTGC 2 cut(s) 566, 731
BspPI GGATC 1 cut(s) 1227
BspQI GCTCTTC 3 cut(s) 48, 199, 1405
BspTI CTTAAG 1 cut(s) 1190
BspTNI GGTCTC 3 cut(s) 13, 584, 1505
BsrFI RCCGGY 1 cut(s) 522
BsrI ACTGG 1 cut(s) 1096
BssAI RCCGGY 1 cut(s) 522
BssECI CCNNGG 6 cut(s) 57, 104, 595, 618, 1127, 1432
BssMI GATC 3 cut(s) 858, 1219, 1423
BssNAI GTATAC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 595, 1127
Bst1107I GTATAC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 5 cut(s) 542, 703, 992, 1306, 1460
Bst6I CTCTTC 3 cut(s) 48, 199, 1405
BstAFI CTTAAG 1 cut(s) 1190
BstC8I GCNNGC 4 cut(s) 518, 680, 693, 1530
BstDEI CTNAG 9 cut(s) 284, 401, 444, 507, 723, 999, 1356, 1427, 1593
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstF5I GGATG 4 cut(s) 483, 930, 1063, 1426
BstKTI GATC 3 cut(s) 861, 1222, 1426
BstMAI GTCTC 8 cut(s) 13, 211, 584, 719, 1082, 1295, 1505, 1550
BstMBI GATC 3 cut(s) 858, 1219, 1423
BstMWI GCNNNNNNNGC 6 cut(s) 176, 517, 688, 743, 1001, 1241
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 2 cut(s) 695, 1532
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 2 cut(s) 738, 1074
BstV2I GAAGAC 1 cut(s) 63
BstZ17I GTATAC 1 cut(s) 249
BsuI GTATCC 1 cut(s) 883
BsuRI GGCC 4 cut(s) 56, 62, 109, 346
BtgZI GCGATG 1 cut(s) 1250
BtsCI GGATG 4 cut(s) 483, 930, 1063, 1426
BtsI GCAGTG 2 cut(s) 87, 1023
BtsIMutI CAGTG 4 cut(s) 87, 547, 699, 1023
BveI ACCTGC 2 cut(s) 566, 731
Cac8I GCNNGC 4 cut(s) 518, 680, 693, 1530
CaiI CAGNNNCTG 2 cut(s) 752, 1091
Cfr10I RCCGGY 1 cut(s) 522
Cfr13I GGNCC 6 cut(s) 108, 117, 127, 1066, 1082, 1460
CspAI ACCGGT 1 cut(s) 522
CspCI CAANNNNNGTGG 4 cut(s) 684, 719, 876, 911
CviAII CATG 5 cut(s) 692, 806, 1143, 1284, 1529
DdeI CTNAG 9 cut(s) 284, 401, 444, 507, 723, 999, 1356, 1427, 1593
DpnI GATC 3 cut(s) 860, 1221, 1425
DpnII GATC 3 cut(s) 858, 1219, 1423
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
Eam1104I CTCTTC 3 cut(s) 48, 199, 1405
EarI CTCTTC 3 cut(s) 48, 199, 1405
Eco130I CCWWGG 2 cut(s) 595, 1127
Eco147I AGGCCT 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 1142
Eco31I GGTCTC 3 cut(s) 13, 584, 1505
Eco47I GGWCC 5 cut(s) 117, 127, 1066, 1082, 1460
Eco57I CTGAAG 1 cut(s) 965
Eco88I CYCGRG 1 cut(s) 348
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO109I RGGNCCY 1 cut(s) 1066
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 2 cut(s) 595, 1127
EcoT22I ATGCAT 1 cut(s) 1530
EcoT38I GRGCYC 1 cut(s) 1142
ErhI CCWWGG 2 cut(s) 595, 1127
FaeI CATG 5 cut(s) 695, 809, 1146, 1287, 1532
FaqI GGGAC 2 cut(s) 482, 1109
FatI CATG 5 cut(s) 691, 805, 1142, 1283, 1528
FauI CCCGC 2 cut(s) 671, 829
FbaI TGATCA 1 cut(s) 858
FblI GTMKAC 1 cut(s) 248
FokI GGATG 4 cut(s) 490, 917, 1070, 1433
FriOI GRGCYC 1 cut(s) 1142
FspBI CTAG 5 cut(s) 215, 323, 816, 1128, 1361
HaeIII GGCC 4 cut(s) 56, 62, 109, 346
HapII CCGG 2 cut(s) 24, 523
Hin1II CATG 5 cut(s) 695, 809, 1146, 1287, 1532
HindIII AAGCTT 2 cut(s) 788, 851
HinfI GANTC 7 cut(s) 138, 495, 584, 1265, 1292, 1344, 1585
HpaII CCGG 2 cut(s) 24, 523
HphI GGTGA 3 cut(s) 634, 838, 1397
Hpy166II GTNNAC 3 cut(s) 249, 1174, 1444
Hpy188I TCNGA 5 cut(s) 163, 186, 508, 1033, 1349
Hpy8I GTNNAC 3 cut(s) 249, 1174, 1444
HpyAV CCTTC 7 cut(s) 46, 117, 596, 940, 1057, 1079, 1463
HpyCH4III ACNGT 5 cut(s) 542, 703, 992, 1306, 1460
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 517, 688, 743, 1001, 1241
HpyF3I CTNAG 9 cut(s) 284, 401, 444, 507, 723, 999, 1356, 1427, 1593
Hsp92II CATG 5 cut(s) 695, 809, 1146, 1287, 1532
Ksp22I TGATCA 1 cut(s) 858
Kzo9I GATC 3 cut(s) 858, 1219, 1423
LguI GCTCTTC 3 cut(s) 48, 199, 1405
LmnI GCTCC 4 cut(s) 26, 361, 1455, 1576
LweI GCATC 6 cut(s) 154, 300, 457, 535, 1037, 1233
MaeI CTAG 5 cut(s) 215, 323, 816, 1128, 1361
MaeIII GTNAC 5 cut(s) 151, 410, 466, 1147, 1490
MalI GATC 3 cut(s) 860, 1221, 1425
MboI GATC 3 cut(s) 858, 1219, 1423
MhlI GDGCHC 2 cut(s) 522, 1142
MluCI AATT 5 cut(s) 609, 1011, 1251, 1274, 1322
MlyI GAGTC 3 cut(s) 147, 504, 578
MmeI TCCRAC 1 cut(s) 15
Mph1103I ATGCAT 1 cut(s) 1530
MseI TTAA 6 cut(s) 374, 636, 1191, 1257, 1325, 1536
MslI CAYNNNNRTG 2 cut(s) 453, 890
MspA1I CMGCKG 2 cut(s) 678, 998
MspCI CTTAAG 1 cut(s) 1190
MspI CCGG 2 cut(s) 24, 523
MspR9I CCNGG 1 cut(s) 620
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 6 cut(s) 176, 517, 688, 743, 1001, 1241
NdeII GATC 3 cut(s) 858, 1219, 1423
NlaIII CATG 5 cut(s) 695, 809, 1146, 1287, 1532
NlaIV GGNNCC 2 cut(s) 28, 128
NmeAIII GCCGAG 4 cut(s) 38, 129, 188, 1457
NmuCI GTSAC 3 cut(s) 151, 466, 1490
NsiI ATGCAT 1 cut(s) 1530
NspI RCATGY 2 cut(s) 695, 1532
PaeI GCATGC 2 cut(s) 695, 1532
PaeR7I CTCGAG 1 cut(s) 348
PaqCI CACCTGC 1 cut(s) 731
PceI AGGCCT 1 cut(s) 56
PciSI GCTCTTC 3 cut(s) 48, 199, 1405
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 101
PfeI GAWTC 4 cut(s) 1265, 1292, 1344, 1585
PflMI CCANNNNNTGG 1 cut(s) 1091
PinAI ACCGGT 1 cut(s) 522
PleI GAGTC 3 cut(s) 146, 503, 578
PpsI GAGTC 3 cut(s) 146, 503, 578
PpuMI RGGWCCY 1 cut(s) 1066
PshBI ATTAAT 1 cut(s) 1257
Psp5II RGGWCCY 1 cut(s) 1066
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspN4I GGNNCC 2 cut(s) 28, 128
PspPI GGNCC 6 cut(s) 108, 117, 127, 1066, 1082, 1460
PspPPI RGGWCCY 1 cut(s) 1066
PspXI VCTCGAGB 1 cut(s) 348
PstI CTGCAG 2 cut(s) 742, 1078
PstNI CAGNNNCTG 2 cut(s) 752, 1091
PvuII CAGCTG 1 cut(s) 998
RseI CAYNNNNRTG 2 cut(s) 453, 890
SapI GCTCTTC 3 cut(s) 48, 199, 1405
SaqAI TTAA 6 cut(s) 374, 636, 1191, 1257, 1325, 1536
Sau3AI GATC 3 cut(s) 858, 1219, 1423
Sau96I GGNCC 6 cut(s) 108, 117, 127, 1066, 1082, 1460
SchI GAGTC 3 cut(s) 147, 504, 578
ScrFI CCNGG 1 cut(s) 620
SduI GDGCHC 2 cut(s) 522, 1142
SfaNI GCATC 6 cut(s) 154, 300, 457, 535, 1037, 1233
SfcI CTRYAG 2 cut(s) 738, 1074
Sfr274I CTCGAG 1 cut(s) 348
SinI GGWCC 5 cut(s) 117, 127, 1066, 1082, 1460
SlaI CTCGAG 1 cut(s) 348
SmiMI CAYNNNNRTG 2 cut(s) 453, 890
SmlI CTYRAG 5 cut(s) 224, 348, 1190, 1517, 1553
SmoI CTYRAG 5 cut(s) 224, 348, 1190, 1517, 1553
SphI GCATGC 2 cut(s) 695, 1532
Sse9I AATT 5 cut(s) 609, 1011, 1251, 1274, 1322
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 4 cut(s) 5, 170, 678, 836
SspMI CTAG 5 cut(s) 215, 323, 816, 1128, 1361
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 618
StyI CCWWGG 2 cut(s) 595, 1127
TaaI ACNGT 5 cut(s) 542, 703, 992, 1306, 1460
TaqI TCGA 6 cut(s) 11, 349, 582, 1113, 1268, 1588
TaqII GACCGA 1 cut(s) 485
TasI AATT 5 cut(s) 609, 1011, 1251, 1274, 1322
TfiI GAWTC 4 cut(s) 1265, 1292, 1344, 1585
Tru1I TTAA 6 cut(s) 374, 636, 1191, 1257, 1325, 1536
Tru9I TTAA 6 cut(s) 374, 636, 1191, 1257, 1325, 1536
TscAI CASTG 4 cut(s) 94, 547, 706, 1030
TseFI GTSAC 3 cut(s) 151, 466, 1490
Tsp45I GTSAC 3 cut(s) 151, 466, 1490
TspDTI ATGAA 3 cut(s) 800, 1275, 1284
TspGWI ACGGA 1 cut(s) 923
TspRI CASTG 4 cut(s) 94, 547, 706, 1030
Van91I CCANNNNNTGG 1 cut(s) 1091
Vha464I CTTAAG 1 cut(s) 1190
VpaK11BI GGWCC 5 cut(s) 117, 127, 1066, 1082, 1460
VspI ATTAAT 1 cut(s) 1257
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 1 cut(s) 609
XbaI TCTAGA 1 cut(s) 214
XceI RCATGY 2 cut(s) 695, 1532
XcmI CCANNNNNNNNNTGG 1 cut(s) 339
XhoI CTCGAG 1 cut(s) 348
XmaJI CCTAGG 1 cut(s) 1127
XmiI GTMKAC 1 cut(s) 248
XspI CTAG 5 cut(s) 215, 323, 816, 1128, 1361
Zsp2I ATGCAT 1 cut(s) 1530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.