Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003375

Physical Location & Seq

Genomic Coordinates Reverse (-)

9073201 .. 9074189

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1086900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCGGTGTCGACCAGTTTCGCCGGAGCAAAGTTGGAGGCTTTGCTGTCATTGTCTTCGTCGTCGGCTGCGACGACGTCGTCCAGGGCTTCTACCGGTTATTCTTTGGTGGGTTCTGTGAGGCCCATTAGGACTAGAAGGCTCCAAATTCAGGGAGGAGTGCGGTGTGAAGTGGCCGCTTCTTCTGATGCTTCTACCGCGGTGGTACACCGGTTTTTACTCTATAATAATGACGCCATTCAGCATCTCTTTGAAGTATCAGCAGGTCTTGACTCTCTTGTCCTTGGAGAAGGTCAAATTCTTGCCCAAGTGAAACAAGTTGTTAAAGTCGGCCAAGGAGTTGTTGGCTTTGGTAGAAACATCAGTGGGCTGTTCAAACACGCAATCACTGTGGGAAAGTGGGTTAGAACGGAAACTAACATTGCTGCTGGGGCAGTTTCTGTAAACTCTGCTGCTGTTGAACTTGCCTTGATGAAGCTTCCTGCATCGCCACATGCTACTGCAAGAATGTTGGTGATTGGTGCCAGCAAAATGGGAAAGCTGGTGATCAAACACTTGGTAGCAAAAGGTTGCACAAAGATGGTTGTTGTGAATAGGACTGAGGAGAGAGTGGCATCTATCCGCGATGAGCTGCATACACCGCATCTGAAACCCCATTATTTTTCAAAAGAAGATGTGAAGGACCTTCCTGCTGTAGGACCAGAGACTGGCGGTTTGAGGCTATTTGTTGATATTTCCGTCCCCCAGAACGTGAGTTCATGTGTTACAGATGTTGTGGTGCTCAACTTTACAATGTTGATGACCTTAAGGGGGTTGTGGCTGCTAACAAAGAGGATCGTCTGCGGAAAGCAATGGAAGCTCAGGAAATTATCACTGAAAAGTCAAAACAAATTGAAGCTTGGAGGGATTCTTTGGAGACGGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008883 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015995 GO:0016491 GO:0016620 GO:0016903 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

GlutR_N GlutR_dimer Shikimate_DH

Protein Analysis

309

Amino Acids

33.14

Weight (kDa)

10.29

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GlutR_N	PF05201	67 - 139	3.1e-21	Glutamyl-tRNAGlu reductase, N-terminal domain
Shikimate_DH	PF01488	157 - 216	1.2e-13	Shikimate / quinate 5-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09940 AT1G58290
fragaria_vesca	FvH4_2g11020 FvH4_2g11020 FvH4_5g33760 FvH4_5g33760 FvH4_5g33760 FvH4_5g33760
malus_domestica	MD07G1086900.v1.1 MD08G1207100.v1.1 MD10G1058000.v1.1 MD15G1391500.v1.1
prunus_persica	Prupe.1G541100_v2.0.a1 Prupe.8G076800_v2.0.a1
pyrus_communis	pycom08g17920 pycom10g04470 pycom15g35220
rosa_chinensis	RchiOBHm_Chr6g0269231 RchiOBHm_Chr7g0233071
rosa_laevigata	RLG00000001302 RLG00000013870
rosa_multiflora	Rmu_sc0002750.1_g000007 Rmu_sc0006068.1_g000009 Rmu_sc0010747.1_g000010 Rmu_ssc0000474.1_g000021
rosa_roxburghii	Rroxscaffold_3G00227710 Rroxscaffold_7G00198920
rosa_rugosa	Rorug06G0046800 Rorug07G0277800.1
rosa_samantha	Rh6DG157400 Rh7AG433100 Rh7BG406000 Rh7CG452600 Rh7DG421700
rosa_wichuraiana	Rw6G014380 Rw7G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	79, 278
AatII	GACGTC	1 cut(s)	80
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	707
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	2 cut(s)	200, 624
AciI	CCGC	9 cut(s)	5, 163, 177, 198, 200, 622, 641, 711, 843
AclWI	GGATC	1 cut(s)	842
AcoI	YGGCCR	2 cut(s)	174, 331
AcsI	RAATTY	2 cut(s)	147, 297
AcyI	GRCGYC	2 cut(s)	77, 234
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	4 cut(s)	151, 695, 707, 810
AflII	CTTAAG	1 cut(s)	805
AgeI	ACCGGT	2 cut(s)	95, 210
AgsI	TTSAA	5 cut(s)	254, 376, 461, 666, 895
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	5 cut(s)	478, 541, 631, 859, 898
AluI	AGCT	5 cut(s)	478, 541, 631, 859, 898
Alw21I	GWGCWC	1 cut(s)	783
Alw26I	GTCTC	2 cut(s)	698, 910
AlwI	GGATC	1 cut(s)	842
AlwNI	CAGNNNCTG	2 cut(s)	440, 707
AoxI	GGCC	3 cut(s)	122, 174, 331
ApeKI	GCWGC	5 cut(s)	68, 425, 452, 631, 820
ApoI	RAATTY	2 cut(s)	147, 297
ArsI	GACNNNNNNTTYG	2 cut(s)	697, 729
AsiGI	ACCGGT	2 cut(s)	95, 210
AspS9I	GGNCC	3 cut(s)	123, 682, 698
AsuHPI	GGTGA	2 cut(s)	526, 556
AvaII	GGWCC	2 cut(s)	682, 698
BaeI	ACNNNNGTAYC	2 cut(s)	197, 230
BanI	GGYRCC	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	783
BbvI	GCAGC	5 cut(s)	55, 412, 439, 618, 807
BccI	CCATC	1 cut(s)	574
BciT130I	CCWGG	1 cut(s)	85
BclI	TGATCA	1 cut(s)	546
BcoDI	GTCTC	2 cut(s)	698, 910
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	693
BfrI	CTTAAG	1 cut(s)	805
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	6 cut(s)	69, 177, 426, 453, 632, 821
BlsI	GCNGC	6 cut(s)	70, 178, 427, 454, 633, 822
Bme1390I	CCNGG	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	682, 698
BmgT120I	GGNCC	3 cut(s)	123, 682, 698
BmiI	GGNNCC	2 cut(s)	143, 523
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	5 cut(s)	178, 253, 494, 623, 652
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	860
BsaHI	GRCGYC	2 cut(s)	77, 234
BsaJI	CCNNGG	4 cut(s)	84, 198, 283, 334
BsaWI	WCCGGW	2 cut(s)	95, 210
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 695, 707, 810
Bse118I	RCCGGY	2 cut(s)	95, 210
Bse1I	ACTGG	2 cut(s)	15, 712
Bse3DI	GCAATG	2 cut(s)	420, 857
BseBI	CCWGG	1 cut(s)	85
BseDI	CCNNGG	4 cut(s)	84, 198, 283, 334
BseLI	CCNNNNNNNGG	4 cut(s)	151, 695, 707, 810
BseMI	GCAATG	2 cut(s)	420, 857
BseMII	CTCAG	2 cut(s)	591, 874
BseNI	ACTGG	2 cut(s)	15, 712
BseRI	GAGGAG	2 cut(s)	171, 617
BseXI	GCAGC	5 cut(s)	55, 412, 439, 618, 807
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	2 cut(s)	200, 624
BshFI	GGCC	3 cut(s)	124, 176, 333
BshNI	GGYRCC	1 cut(s)	521
BshTI	ACCGGT	2 cut(s)	95, 210
BsiHKAI	GWGCWC	1 cut(s)	783
BsiSI	CCGG	3 cut(s)	24, 96, 211
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	4 cut(s)	151, 695, 707, 810
BsmAI	GTCTC	2 cut(s)	698, 910
BsmBI	CGTCTC	1 cut(s)	910
BsmFI	GGGAC	1 cut(s)	725
BsnI	GGCC	3 cut(s)	124, 176, 333
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	2 cut(s)	546, 834
BspACI	CCGC	9 cut(s)	5, 163, 177, 198, 200, 622, 641, 711, 843
BspANI	GGCC	3 cut(s)	124, 176, 333
BspCNI	CTCAG	2 cut(s)	592, 873
BspFNI	CGCG	2 cut(s)	200, 624
BspLI	GGNNCC	2 cut(s)	143, 523
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	842
BspT107I	GGYRCC	1 cut(s)	521
BspTI	CTTAAG	1 cut(s)	805
BsrDI	GCAATG	2 cut(s)	420, 857
BsrFI	RCCGGY	2 cut(s)	95, 210
BsrI	ACTGG	2 cut(s)	15, 712
BssAI	RCCGGY	2 cut(s)	95, 210
BssECI	CCNNGG	4 cut(s)	84, 198, 283, 334
BssMI	GATC	2 cut(s)	546, 834
BssNI	GRCGYC	2 cut(s)	77, 234
BssT1I	CCWWGG	2 cut(s)	283, 334
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	2 cut(s)	77, 234
BstAFI	CTTAAG	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	2 cut(s)	600, 860
BstDSI	CCRYGG	1 cut(s)	198
BstENI	CCTNNNNNAGG	1 cut(s)	693
BstFNI	CGCG	2 cut(s)	200, 624
BstKTI	GATC	2 cut(s)	549, 837
BstMAI	GTCTC	2 cut(s)	698, 910
BstMBI	GATC	2 cut(s)	546, 834
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 431, 640, 856
BstNI	CCWGG	1 cut(s)	85
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	2 cut(s)	200, 624
BstV1I	GCAGC	5 cut(s)	55, 412, 439, 618, 807
BstV2I	GAAGAC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	124, 176, 333
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	2 cut(s)	471, 639
BtsIMutI	CAGTG	3 cut(s)	370, 387, 872
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	526
CaiI	CAGNNNCTG	2 cut(s)	440, 707
Cfr10I	RCCGGY	2 cut(s)	95, 210
Cfr13I	GGNCC	3 cut(s)	123, 682, 698
Cfr42I	CCGCGG	1 cut(s)	201
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	1 cut(s)	206
CspAI	ACCGGT	2 cut(s)	95, 210
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	2 cut(s)	494, 759
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	2 cut(s)	600, 860
DpnI	GATC	2 cut(s)	548, 836
DpnII	GATC	2 cut(s)	546, 834
DrdI	GACNNNNNNGTC	2 cut(s)	79, 278
DseDI	GACNNNNNNGTC	2 cut(s)	79, 278
EaeI	YGGCCR	2 cut(s)	174, 331
Eco130I	CCWWGG	2 cut(s)	283, 334
Eco47I	GGWCC	2 cut(s)	682, 698
EcoNI	CCTNNNNNAGG	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	283, 334
ErhI	CCWWGG	2 cut(s)	283, 334
Esp3I	CGTCTC	1 cut(s)	910
FaeI	CATG	2 cut(s)	497, 762
FaiI	YATR	5 cut(s)	225, 495, 636, 760, 925
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	2 cut(s)	493, 758
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	6 cut(s)	69, 177, 426, 453, 632, 821
Fsp4HI	GCNGC	6 cut(s)	69, 177, 426, 453, 632, 821
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	6 cut(s)	69, 177, 426, 453, 632, 821
GsaI	CCCAGC	1 cut(s)	432
HaeIII	GGCC	3 cut(s)	124, 176, 333
HapII	CCGG	3 cut(s)	24, 96, 211
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	2 cut(s)	77, 234
Hin1II	CATG	2 cut(s)	497, 762
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	476, 896
HinfI	GANTC	2 cut(s)	272, 907
HpaII	CCGG	3 cut(s)	24, 96, 211
HphI	GGTGA	2 cut(s)	526, 556
Hpy166II	GTNNAC	3 cut(s)	12, 208, 445
Hpy188I	TCNGA	2 cut(s)	187, 648
Hpy188III	TCNNGA	2 cut(s)	269, 862
Hpy8I	GTNNAC	3 cut(s)	12, 208, 445
Hpy99I	CGWCG	5 cut(s)	64, 67, 76, 79, 82
HpyAV	CCTTC	4 cut(s)	132, 284, 673, 695
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	2 cut(s)	77, 750
HpyCH4V	TGCA	4 cut(s)	485, 503, 573, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 431, 640, 856
HpyF3I	CTNAG	2 cut(s)	600, 860
HpySE526I	ACGT	2 cut(s)	77, 750
Hsp92I	GRCGYC	2 cut(s)	77, 234
Hsp92II	CATG	2 cut(s)	497, 762
Ksp22I	TGATCA	1 cut(s)	546
KspI	CCGCGG	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	546, 834
LmnI	GCTCC	2 cut(s)	26, 147
Lsp1109I	GCAGC	5 cut(s)	55, 412, 439, 618, 807
LweI	GCATC	5 cut(s)	178, 253, 494, 623, 652
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	2 cut(s)	77, 750
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	2 cut(s)	548, 836
MboI	GATC	2 cut(s)	546, 834
MboII	GAAGA	3 cut(s)	48, 174, 683
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	4 cut(s)	147, 297, 866, 890
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	7 cut(s)	31, 114, 149, 595, 711, 825, 896
MseI	TTAA	2 cut(s)	324, 806
MslI	CAYNNNNRTG	1 cut(s)	578
MspA1I	CMGCKG	1 cut(s)	200
MspCI	CTTAAG	1 cut(s)	805
MspI	CCGG	3 cut(s)	24, 96, 211
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MvnI	CGCG	2 cut(s)	200, 624
MwoI	GCNNNNNNNGC	4 cut(s)	197, 431, 640, 856
NdeII	GATC	2 cut(s)	546, 834
NlaIII	CATG	2 cut(s)	497, 762
NlaIV	GGNNCC	2 cut(s)	143, 523
NspI	RCATGY	1 cut(s)	497
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 71
PfeI	GAWTC	1 cut(s)	907
PflFI	GACNNNGTC	2 cut(s)	76, 79
PflMI	CCANNNNNTGG	1 cut(s)	707
PinAI	ACCGGT	2 cut(s)	95, 210
PkrI	GCNGC	6 cut(s)	70, 178, 427, 454, 633, 822
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	682
Psp5II	RGGWCCY	1 cut(s)	682
Psp6I	CCWGG	1 cut(s)	83
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	143, 523
PspPI	GGNCC	3 cut(s)	123, 682, 698
PspPPI	RGGWCCY	1 cut(s)	682
PstNI	CAGNNNCTG	2 cut(s)	440, 707
PsyI	GACNNNGTC	2 cut(s)	76, 79
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	578
SacII	CCGCGG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	10
SaqAI	TTAA	2 cut(s)	324, 806
SatI	GCNGC	6 cut(s)	69, 177, 426, 453, 632, 821
Sau3AI	GATC	2 cut(s)	546, 834
Sau96I	GGNCC	3 cut(s)	123, 682, 698
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	85
SduI	GDGCHC	1 cut(s)	783
SfaNI	GCATC	5 cut(s)	178, 253, 494, 623, 652
SfcI	CTRYAG	1 cut(s)	693
Sfr303I	CCGCGG	1 cut(s)	201
SgrBI	CCGCGG	1 cut(s)	201
SinI	GGWCC	2 cut(s)	682, 698
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
Sse9I	AATT	4 cut(s)	147, 297, 866, 890
SsiI	CCGC	9 cut(s)	5, 163, 177, 198, 200, 622, 641, 711, 843
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	2 cut(s)	283, 334
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	2 cut(s)	80, 753
TaqI	TCGA	1 cut(s)	11
TasI	AATT	4 cut(s)	147, 297, 866, 890
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	907
Tru1I	TTAA	2 cut(s)	324, 806
Tru9I	TTAA	2 cut(s)	324, 806
TscAI	CASTG	3 cut(s)	370, 394, 879
TseI	GCWGC	5 cut(s)	68, 425, 452, 631, 820
TspDTI	ATGAA	2 cut(s)	488, 747
TspGWI	ACGGA	2 cut(s)	425, 727
TspRI	CASTG	3 cut(s)	370, 394, 879
Tth111I	GACNNNGTC	2 cut(s)	76, 79
Van91I	CCANNNNNTGG	1 cut(s)	707
Vha464I	CTTAAG	1 cut(s)	805
VpaK11BI	GGWCC	2 cut(s)	682, 698
XagI	CCTNNNNNAGG	1 cut(s)	693
XapI	RAATTY	2 cut(s)	147, 297
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.