Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003375

Physical Location & Seq

Genomic Coordinates Forward (+)

35041556 .. 35042809

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATTTGCATAATCCCAAGAGAAATCAGAAATCCCAAACACCCCAACCCCCTCCGGAATTCCCAATTGGCAAGGGACTCCCACAGAGAGGGAGAGAGGGTCAATTCTTTTGTACGCCCACCAAACCCACACCCTCCCCCCTTCTCTCTCAAAACGCAAATTAGAACCCAAAAATCCAAATCAATCGCCCAGCATTACTTCCTTCGGCTGCTCCAATCCCAATACCACACTCCTCCAATCTCTTCTCTTCTCAAATTTTTGAGGATTTTTGGAAGCGCCTTCTCGTTTGGGTCAATGGCGGTGTCGACCAGTTTCGCCGGAGCAAAGTTGGAGGCTCTGCTGTCGAGATCTTCATCGTCGGCTGCAACCACGTCGTCCACGGCCTCTAGCGGTTCCTGTTTGGTGGGTTCTGTGAGGCCAATTAGGAGCCGAAGGCTCCAAATTCAGAGAGGAGTGAGGTGCGAGGTGGCTGCTTCTTCTGATGCTTCTGCTGCCGCGGTTCAGTCCGTCGCTTCCAATATCTCCGCTCTTGAGCAGCTCAAGACCTCTGCCGCTGACAGTACACACAAAGGAAAGAAGCAGCATTGTGGTCATCGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008883 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015995 GO:0016491 GO:0016620 GO:0016903 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0140098 GO:0140101 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 ko01120 map00860 map01100 map01110 map01120

Pfam Domains

Protein Families

GlutR_N GlutR_dimer Shikimate_DH

Protein Analysis

201

Amino Acids

21.72

Weight (kDa)

11.24

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09940 AT1G58290
fragaria_vesca	FvH4_2g11020 FvH4_2g11020 FvH4_5g33760 FvH4_5g33760 FvH4_5g33760 FvH4_5g33760
malus_domestica	MD07G1086900.v1.1 MD08G1207100.v1.1 MD10G1058000.v1.1 MD15G1391500.v1.1
prunus_persica	Prupe.1G541100_v2.0.a1 Prupe.8G076800_v2.0.a1
pyrus_communis	pycom08g17920 pycom10g04470 pycom15g35220
rosa_chinensis	RchiOBHm_Chr6g0269231 RchiOBHm_Chr7g0233071
rosa_laevigata	RLG00000001302 RLG00000013870
rosa_multiflora	Rmu_sc0002750.1_g000007 Rmu_sc0006068.1_g000009 Rmu_sc0010747.1_g000010 Rmu_ssc0000474.1_g000021
rosa_roxburghii	Rroxscaffold_3G00227710 Rroxscaffold_7G00198920
rosa_rugosa	Rorug06G0046800 Rorug07G0277800.1
rosa_samantha	Rh6DG157400 Rh7AG433100 Rh7BG406000 Rh7CG452600 Rh7DG421700
rosa_wichuraiana	Rw6G014380 Rw7G035720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	305
AccII	CGCG	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	6 cut(s)	299, 390, 495, 497, 525, 552
AcsI	RAATTY	3 cut(s)	58, 254, 441
AfaI	GTAC	2 cut(s)	114, 562
AfiI	CCNNNNNNNGG	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	372
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AluBI	AGCT	1 cut(s)	538
AluI	AGCT	1 cut(s)	538
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	2 cut(s)	381, 416
ApeKI	GCWGC	6 cut(s)	208, 362, 470, 491, 535, 580
ApoI	RAATTY	3 cut(s)	58, 254, 441
AspLEI	GCGC	1 cut(s)	278
BbvI	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
BceAI	ACGGC	1 cut(s)	396
BcgI	CGANNNNNNTGC	4 cut(s)	354, 388, 452, 486
BfaI	CTAG	1 cut(s)	387
BfoI	RGCGCY	1 cut(s)	279
BglII	AGATCT	1 cut(s)	347
BisI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
BlsI	GCNGC	8 cut(s)	210, 364, 472, 493, 496, 537, 553, 582
BmgBI	CACGTC	1 cut(s)	372
BmiI	GGNNCC	3 cut(s)	394, 428, 437
BmsI	GCATC	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	524, 551
BsaBI	GATNNNNATC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	378, 495
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	378, 495
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	222, 465
BseXI	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	2 cut(s)	383, 418
BsiSI	CCGG	2 cut(s)	55, 318
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	89
BsnI	GGCC	2 cut(s)	383, 418
Bsp13I	TCCGGA	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	347
BspACI	CCGC	6 cut(s)	299, 390, 495, 497, 525, 552
BspANI	GGCC	2 cut(s)	383, 418
BspEI	TCCGGA	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	3 cut(s)	394, 428, 437
BsrBI	CCGCTC	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	378, 495
BssMI	GATC	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	560
Bst6I	CTCTTC	2 cut(s)	247, 252
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	2 cut(s)	378, 495
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	350
BstMBI	GATC	1 cut(s)	347
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
BstX2I	RGATCY	1 cut(s)	347
BstYI	RGATCY	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	383, 418
BtgI	CCRYGG	2 cut(s)	378, 495
BtrI	CACGTC	1 cut(s)	372
CfoI	GCGC	1 cut(s)	278
Cfr42I	CCGCGG	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	113, 561
CviJI	RGCY	9 cut(s)	208, 335, 362, 383, 418, 429, 436, 470, 538
CviKI_1	RGCY	9 cut(s)	208, 335, 362, 383, 418, 429, 436, 470, 538
CviQI	GTAC	2 cut(s)	113, 561
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	1 cut(s)	349
DpnII	GATC	1 cut(s)	347
Eam1104I	CTCTTC	2 cut(s)	247, 252
EarI	CTCTTC	2 cut(s)	247, 252
EcoRI	GAATTC	1 cut(s)	58
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
Fsp4HI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
GsaI	CCCAGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	383, 418
HapII	CCGG	2 cut(s)	55, 318
HhaI	GCGC	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HincII	GTYRAC	1 cut(s)	306
HindII	GTYRAC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	55, 318
Hpy166II	GTNNAC	3 cut(s)	306, 378, 563
Hpy188I	TCNGA	4 cut(s)	29, 447, 481, 597
Hpy188III	TCNNGA	4 cut(s)	55, 345, 530, 541
Hpy8I	GTNNAC	3 cut(s)	306, 378, 563
Hpy99I	CGWCG	3 cut(s)	361, 376, 512
HpyAV	CCTTC	4 cut(s)	151, 212, 289, 426
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	2 cut(s)	9, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	1 cut(s)	600
HpySE526I	ACGT	1 cut(s)	371
HspAI	GCGC	1 cut(s)	276
Kpn2I	TCCGGA	1 cut(s)	54
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	1 cut(s)	347
LmnI	GCTCC	4 cut(s)	216, 320, 426, 441
LpnPI	CCDG	5 cut(s)	68, 203, 322, 331, 409
Lsp1109I	GCAGC	6 cut(s)	195, 349, 457, 478, 547, 592
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	371
MalI	GATC	1 cut(s)	349
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	1 cut(s)	347
MboII	GAAGA	4 cut(s)	234, 239, 342, 468
MfeI	CAATTG	1 cut(s)	65
MflI	RGATCY	1 cut(s)	347
MluCI	AATT	7 cut(s)	58, 65, 103, 159, 254, 420, 441
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	309
MroI	TCCGGA	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	497, 554
MspI	CCGG	2 cut(s)	55, 318
MunI	CAATTG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	491
NdeII	GATC	1 cut(s)	347
NlaIV	GGNNCC	3 cut(s)	394, 428, 437
PkrI	GCNGC	8 cut(s)	210, 364, 472, 493, 496, 537, 553, 582
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	394, 428, 437
PsuI	RGATCY	1 cut(s)	347
RsaI	GTAC	2 cut(s)	114, 562
RsaNI	GTAC	2 cut(s)	113, 561
SacII	CCGCGG	1 cut(s)	498
SalI	GTCGAC	1 cut(s)	304
SatI	GCNGC	8 cut(s)	209, 363, 471, 492, 495, 536, 552, 581
Sau3AI	GATC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	71
SetI	ASST	5 cut(s)	374, 461, 468, 540, 548
SfaNI	GCATC	1 cut(s)	472
Sfr303I	CCGCGG	1 cut(s)	498
SgrBI	CCGCGG	1 cut(s)	498
SmlI	CTYRAG	2 cut(s)	530, 539
SmoI	CTYRAG	2 cut(s)	530, 539
Sse9I	AATT	7 cut(s)	58, 65, 103, 159, 254, 420, 441
SsiI	CCGC	6 cut(s)	299, 390, 495, 497, 525, 552
SspMI	CTAG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	560
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	305, 344
TasI	AATT	7 cut(s)	58, 65, 103, 159, 254, 420, 441
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	2 cut(s)	497, 554
TseI	GCWGC	6 cut(s)	208, 362, 470, 491, 535, 580
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	1 cut(s)	496
XapI	RAATTY	3 cut(s)	58, 254, 441
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.