FvH4_5g37390
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
27487448 .. 27490353
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37390.t1

Sequence Viewer

Length: 1548 bp
ATGAGAAAAATACCAGGAAATCAAGAGCACAGAGCGTGGGAAATGGGCGTGGAAGGCTATGCCGTTGACGTTCCAGTCACCGGCATCAACAACGGAAAGATAACGCTCTCCGTAGTGATCACTTGCATTGTAGCTGCGTCTTGTGGCCTCATATATGGCTACGACCTCGGAATTTCAGGAGGAGTGACCACAATGCCGTCATTCCTTCTCAAATTCTTTCCGTCCGTACTGAAGAAGGCAGCAGCGACCAAACCAAACATCTACTGCGTATATGATAGTCAGATTTTGACAACATTCACATCCTCTCTCTACATAGCCGGTATGTTCGCAACGCTTGTGGCAAGCCGTCTCGTCAAGACTCTAGGCCGGAGGAACGTCATGCTCTTGGGTGGTTCTACCTTCCTCGTCGGGTCTGCTCTAAATGGTGGAGCTGTTAATGTTGCCATGCTCATCTTGGGTCGTATGATGCTAGGGTTTGGCCTTGGTTTCACTAACCAAGCTGCTCCCATCTACCTCTCCGAAGTCGCACCACCAAAATGGCGCGGAGCCTTCGGCACCGGCTTCCAGTTCTTCATTGGTATCGGTGTCCTGGCTGCCAGCTGCATAAACTTGGCCGCCGCCAAGCACCCACACGGGTGGCGTTTCTGCCTCGGCCTTGCCATAGTCCCGGCTGCCATAATGACCTTTGGTGCACTCTTCATTTCCGACTCCCCCTCAAGCCTAGTCGAACGCAACAAGCTCGAGCAAGCCAAGAGAGCCTTATTAAACATCCGAGGCAAAGACACAGACATCGAACCAGAGCTCGCCCTTCTCATTAGAAATAGTGAAATGGCCAAAGCTATCAATGAGGAGCCATTTATGACTATATTTCAGAGGCAGTACAGGCCTCAACTTGTGATCGGAATGCTTGCCATTCCGTTTTTTCATCAGATGTCTGGGATCAACGCCGTCGCGTTTTACGCGCCAGTGCTGTTTCAGTCTGTAGGGATGGGAAACGATTCAGCTCTCTTTGCGACGATCATACTCGGAATGGTTAATATCCTGTCGATACTTGTGTCTGCTTTTGCGATTGATCGGTGTGGGAGGAGGTTTTTGTTGATGGAAGCTGGTATCCAAATGATCATTACTGAGGTTGGGGTGGCTATTGTTCTAGCACTTACAACAGGTACTGACGGAACCAAGCGTATATCAAAGGGGTATGCCGTACTAATCCTAGTGTTGATGTGTTTCTATGCTGCTGGTTTTGGTTGGTCATGGGGTCCGATGAACTGGCTCATACCAATTGAGATATTCCCCATGAAGATTCGACCCACAGGGCAAAGCGTCGGGATTTTTGTGAACTTTGCAGCCACATTTTTGGTGTCCCAAACGTTCTTGACAATGTTGTGCCATCTCAAATATGGCACATTCTTGTTCTATGGAGGTTGGATATTGGTCATGACCATTTTTGCTGCTCTGTTGTTGCCAGAGACTAAAGGGATACCACTGGAATCGATGCATACGGTGTGGGAGAAGCACTGGTATTGGCGTCGGTTCGTTCAGGGTTAA

Protein Analysis

516

Amino Acids

56.22

Weight (kDa)

9.44

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 42 - 503 2.3e-107 Sugar (and other) transporter
MFS_1 PF07690 97 - 453 9.5e-22 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 554
AccII CGCG 3 cut(s) 543, 953, 962
AciI CCGC 3 cut(s) 543, 615, 618
AclI AACGTT 1 cut(s) 1370
AclWI GGATC 1 cut(s) 947
AcoI YGGCCR 2 cut(s) 612, 831
AcsI RAATTY 2 cut(s) 171, 212
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 1528
AfaI GTAC 4 cut(s) 228, 881, 1168, 1206
AfiI CCNNNNNNNGG 1 cut(s) 80
AjnI CCWGG 2 cut(s) 13, 588
AleI CACNNNNGTG 1 cut(s) 634
AluBI AGCT 9 cut(s) 134, 431, 500, 600, 739, 802, 839, 1004, 1106
AluI AGCT 9 cut(s) 134, 431, 500, 600, 739, 802, 839, 1004, 1106
Alw21I GWGCWC 3 cut(s) 30, 694, 804
Alw26I GTCTC 2 cut(s) 353, 1463
Alw44I GTGCAC 1 cut(s) 690
AlwI GGATC 1 cut(s) 947
AlwNI CAGNNNCTG 1 cut(s) 1169
Ama87I CYCGRG 1 cut(s) 740
AoxI GGCC 7 cut(s) 145, 364, 478, 612, 652, 831, 884
ApaLI GTGCAC 1 cut(s) 690
ApoI RAATTY 2 cut(s) 171, 212
Asp700I GAANNNNTTC 1 cut(s) 997
AspLEI GCGC 2 cut(s) 543, 964
AspS9I GGNCC 1 cut(s) 1259
AsuC2I CCSGG 1 cut(s) 668
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 1 cut(s) 1259
BaeGI GKGCMC 1 cut(s) 694
BaeI ACNNNNGTAYC 2 cut(s) 1040, 1073
BalI TGGCCA 1 cut(s) 833
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 1 cut(s) 804
Bbv12I GWGCWC 3 cut(s) 30, 694, 804
BccI CCATC 4 cut(s) 515, 982, 1093, 1398
BceAI ACGGC 5 cut(s) 47, 181, 330, 932, 1187
BcgI CGANNNNNNTGC 2 cut(s) 721, 755
BciT130I CCWGG 2 cut(s) 15, 590
BciVI GTATCC 2 cut(s) 1121, 1473
BclI TGATCA 2 cut(s) 117, 1119
BcnI CCSGG 1 cut(s) 668
BcoDI GTCTC 2 cut(s) 353, 1463
BfaI CTAG 5 cut(s) 362, 470, 722, 1151, 1214
BfmI CTRYAG 1 cut(s) 981
BfuI GTATCC 2 cut(s) 1121, 1473
Bme1390I CCNGG 3 cut(s) 15, 590, 668
Bme18I GGWCC 1 cut(s) 1259
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 1259
BmiI GGNNCC 5 cut(s) 547, 556, 852, 1177, 1260
BmrFI CCNGG 3 cut(s) 15, 590, 668
BmsI GCATC 3 cut(s) 93, 456, 1485
BpuEI CTTGAG 1 cut(s) 700
BpuMI CCSGG 1 cut(s) 668
Bsa29I ATCGAT 1 cut(s) 1493
BsaHI GRCGYC 1 cut(s) 1528
BsaJI CCNNGG 4 cut(s) 166, 481, 649, 772
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 3 cut(s) 80, 317, 557
Bse1I ACTGG 6 cut(s) 74, 565, 965, 1274, 1491, 1523
BseBI CCWGG 2 cut(s) 15, 590
BseCI ATCGAT 1 cut(s) 1493
BseDI CCNNGG 4 cut(s) 166, 481, 649, 772
BseGI GGATG 3 cut(s) 299, 768, 993
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 1119
BseNI ACTGG 6 cut(s) 74, 565, 965, 1274, 1491, 1523
BseRI GAGGAG 3 cut(s) 195, 863, 1099
BseSI GKGCMC 1 cut(s) 694
Bsh1236I CGCG 3 cut(s) 543, 953, 962
BshFI GGCC 7 cut(s) 147, 366, 480, 614, 654, 833, 886
BshNI GGYRCC 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 1493
BsiHKAI GWGCWC 3 cut(s) 30, 694, 804
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 5 cut(s) 81, 318, 367, 558, 668
BslFI GGGAC 2 cut(s) 650, 1348
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 2 cut(s) 353, 1463
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 2 cut(s) 650, 1348
BsmI GAATGC 1 cut(s) 909
BsnI GGCC 7 cut(s) 147, 366, 480, 614, 654, 833, 886
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 3 cut(s) 30, 694, 804
Bsp143I GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
BspACI CCGC 3 cut(s) 543, 615, 618
BspANI GGCC 7 cut(s) 147, 366, 480, 614, 654, 833, 886
BspCNI CTCAG 1 cut(s) 1120
BspDI ATCGAT 1 cut(s) 1493
BspFNI CGCG 3 cut(s) 543, 953, 962
BspHI TCATGA 1 cut(s) 1437
BspLI GGNNCC 5 cut(s) 547, 556, 852, 1177, 1260
BspPI GGATC 1 cut(s) 947
BspT107I GGYRCC 1 cut(s) 554
BsrFI RCCGGY 3 cut(s) 80, 317, 557
BsrI ACTGG 6 cut(s) 74, 565, 965, 1274, 1491, 1523
BssAI RCCGGY 3 cut(s) 80, 317, 557
BssECI CCNNGG 4 cut(s) 166, 481, 649, 772
BssMI GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
BssNI GRCGYC 1 cut(s) 1528
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 15, 590
Bst4CI ACNGT 1 cut(s) 1504
Bst6I CTCTTC 1 cut(s) 701
BstACI GRCGYC 1 cut(s) 1528
BstC8I GCNNGC 5 cut(s) 343, 598, 747, 804, 909
BstDEI CTNAG 1 cut(s) 1128
BstF5I GGATG 3 cut(s) 299, 768, 993
BstFNI CGCG 3 cut(s) 543, 953, 962
BstHHI GCGC 2 cut(s) 543, 964
BstKTI GATC 6 cut(s) 120, 900, 942, 1020, 1075, 1122
BstMAI GTCTC 2 cut(s) 353, 1463
BstMBI GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
BstMWI GCNNNNNNNGC 5 cut(s) 54, 755, 883, 959, 1010
BstNI CCWGG 2 cut(s) 15, 590
BstSCI CCNGG 3 cut(s) 13, 588, 666
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 694
BstUI CGCG 3 cut(s) 543, 953, 962
BstXI CCANNNNNNTGG 3 cut(s) 537, 636, 1357
Bsu15I ATCGAT 1 cut(s) 1493
BsuI GTATCC 2 cut(s) 1121, 1473
BsuRI GGCC 7 cut(s) 147, 366, 480, 614, 654, 833, 886
BsuTUI ATCGAT 1 cut(s) 1493
BtsCI GGATG 3 cut(s) 299, 768, 993
BtsIMutI CAGTG 3 cut(s) 972, 1484, 1516
Cac8I GCNNGC 5 cut(s) 343, 598, 747, 804, 909
CaiI CAGNNNCTG 1 cut(s) 1169
CciI TCATGA 1 cut(s) 1437
CfoI GCGC 2 cut(s) 543, 964
Cfr10I RCCGGY 3 cut(s) 80, 317, 557
Cfr13I GGNCC 1 cut(s) 1259
ClaI ATCGAT 1 cut(s) 1493
CseI GACGC 3 cut(s) 126, 1312, 1517
Csp6I GTAC 4 cut(s) 227, 880, 1167, 1205
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 5 cut(s) 379, 445, 1254, 1297, 1438
CviQI GTAC 4 cut(s) 227, 880, 1167, 1205
DdeI CTNAG 1 cut(s) 1128
DpnI GATC 6 cut(s) 119, 899, 941, 1019, 1074, 1121
DpnII GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 2 cut(s) 612, 831
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Ecl136II GAGCTC 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 481
Eco147I AGGCCT 1 cut(s) 886
Eco24I GRGCYC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 1259
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 802
EcoRII CCWGG 2 cut(s) 13, 588
EcoT14I CCWWGG 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 1500
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 1 cut(s) 481
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 5 cut(s) 382, 448, 1257, 1300, 1441
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FaqI GGGAC 2 cut(s) 650, 1348
FatI CATG 5 cut(s) 378, 444, 1253, 1296, 1437
FbaI TGATCA 2 cut(s) 117, 1119
FokI GGATG 3 cut(s) 286, 755, 1000
FriOI GRGCYC 1 cut(s) 804
FspBI CTAG 5 cut(s) 362, 470, 722, 1151, 1214
GlaI GCGC 2 cut(s) 542, 963
HaeIII GGCC 7 cut(s) 147, 366, 480, 614, 654, 833, 886
HapII CCGG 5 cut(s) 81, 318, 367, 558, 668
HgaI GACGC 3 cut(s) 126, 1312, 1517
HhaI GCGC 2 cut(s) 543, 964
Hin1I GRCGYC 1 cut(s) 1528
Hin1II CATG 5 cut(s) 382, 448, 1257, 1300, 1441
Hin6I GCGC 2 cut(s) 541, 962
HinP1I GCGC 2 cut(s) 541, 962
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 5 cut(s) 358, 707, 998, 1303, 1490
HpaII CCGG 5 cut(s) 81, 318, 367, 558, 668
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 3 cut(s) 67, 692, 1339
Hpy188III TCNNGA 6 cut(s) 23, 177, 355, 1327, 1375, 1438
Hpy8I GTNNAC 3 cut(s) 67, 692, 1339
Hpy99I CGWCG 5 cut(s) 410, 953, 1018, 1328, 1533
HpyAV CCTTC 6 cut(s) 47, 215, 229, 409, 559, 818
HpyCH4III ACNGT 1 cut(s) 1504
HpyCH4IV ACGT 3 cut(s) 69, 375, 1370
HpyCH4V TGCA 5 cut(s) 126, 603, 692, 1346, 1498
HpyF10VI GCNNNNNNNGC 5 cut(s) 54, 755, 883, 959, 1010
HpyF3I CTNAG 1 cut(s) 1128
HpySE526I ACGT 3 cut(s) 69, 375, 1370
Hsp92I GRCGYC 1 cut(s) 1528
Hsp92II CATG 5 cut(s) 382, 448, 1257, 1300, 1441
HspAI GCGC 2 cut(s) 541, 962
Ksp22I TGATCA 2 cut(s) 117, 1119
Kzo9I GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
LmnI GCTCC 4 cut(s) 428, 508, 545, 850
LweI GCATC 3 cut(s) 93, 456, 1485
MaeI CTAG 5 cut(s) 362, 470, 722, 1151, 1214
MaeII ACGT 3 cut(s) 69, 375, 1370
MaeIII GTNAC 2 cut(s) 76, 184
MalI GATC 6 cut(s) 119, 899, 941, 1019, 1074, 1121
MboI GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
MboII GAAGA 4 cut(s) 244, 562, 688, 1312
MfeI CAATTG 1 cut(s) 1281
MhlI GDGCHC 3 cut(s) 30, 694, 804
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 3 cut(s) 171, 212, 1281
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 2 cut(s) 352, 701
MmeI TCCRAC 2 cut(s) 729, 1406
Mox20I TGGCCA 1 cut(s) 833
Mph1103I ATGCAT 1 cut(s) 1500
MroXI GAANNNNTTC 1 cut(s) 997
MscI TGGCCA 1 cut(s) 833
MseI TTAA 4 cut(s) 435, 764, 1035, 1546
MslI CAYNNNNRTG 2 cut(s) 535, 634
Msp20I TGGCCA 1 cut(s) 833
MspA1I CMGCKG 1 cut(s) 600
MspI CCGG 5 cut(s) 81, 318, 367, 558, 668
MspR9I CCNGG 3 cut(s) 15, 590, 668
MunI CAATTG 1 cut(s) 1281
Mva1269I GAATGC 1 cut(s) 909
MvaI CCWGG 2 cut(s) 15, 590
MvnI CGCG 3 cut(s) 543, 953, 962
MwoI GCNNNNNNNGC 5 cut(s) 54, 755, 883, 959, 1010
NciI CCSGG 1 cut(s) 668
NdeII GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
NlaIII CATG 5 cut(s) 382, 448, 1257, 1300, 1441
NlaIV GGNNCC 5 cut(s) 547, 556, 852, 1177, 1260
NmeAIII GCCGAG 1 cut(s) 630
NmuCI GTSAC 2 cut(s) 76, 184
NsiI ATGCAT 1 cut(s) 1500
OliI CACNNNNGTG 1 cut(s) 634
PaeR7I CTCGAG 1 cut(s) 740
PagI TCATGA 1 cut(s) 1437
PceI AGGCCT 1 cut(s) 886
PctI GAATGC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 997
PfeI GAWTC 3 cut(s) 998, 1303, 1490
PleI GAGTC 2 cut(s) 352, 701
PpsI GAGTC 2 cut(s) 352, 701
Psp124BI GAGCTC 1 cut(s) 804
Psp1406I AACGTT 1 cut(s) 1370
Psp6I CCWGG 2 cut(s) 13, 588
PspGI CCWGG 2 cut(s) 13, 588
PspN4I GGNNCC 5 cut(s) 547, 556, 852, 1177, 1260
PspPI GGNCC 1 cut(s) 1259
PspXI VCTCGAGB 1 cut(s) 740
PstNI CAGNNNCTG 1 cut(s) 1169
PvuII CAGCTG 1 cut(s) 600
RsaI GTAC 4 cut(s) 228, 881, 1168, 1206
RsaNI GTAC 4 cut(s) 227, 880, 1167, 1205
RseI CAYNNNNRTG 2 cut(s) 535, 634
SacI GAGCTC 1 cut(s) 804
SaqAI TTAA 4 cut(s) 435, 764, 1035, 1546
Sau3AI GATC 6 cut(s) 117, 897, 939, 1017, 1072, 1119
Sau96I GGNCC 1 cut(s) 1259
SchI GAGTC 2 cut(s) 352, 701
ScrFI CCNGG 3 cut(s) 15, 590, 668
SduI GDGCHC 3 cut(s) 30, 694, 804
SfaNI GCATC 3 cut(s) 93, 456, 1485
SfcI CTRYAG 1 cut(s) 981
Sfr274I CTCGAG 1 cut(s) 740
SinI GGWCC 1 cut(s) 1259
SlaI CTCGAG 1 cut(s) 740
SmiMI CAYNNNNRTG 2 cut(s) 535, 634
SmlI CTYRAG 2 cut(s) 715, 740
SmoI CTYRAG 2 cut(s) 715, 740
Sse9I AATT 3 cut(s) 171, 212, 1281
SseBI AGGCCT 1 cut(s) 886
SsiI CCGC 3 cut(s) 543, 615, 618
SspMI CTAG 5 cut(s) 362, 470, 722, 1151, 1214
SstI GAGCTC 1 cut(s) 804
StuI AGGCCT 1 cut(s) 886
StyD4I CCNGG 3 cut(s) 13, 588, 666
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 1504
TaiI ACGT 3 cut(s) 72, 378, 1373
TaqI TCGA 6 cut(s) 726, 741, 792, 1046, 1306, 1493
TasI AATT 3 cut(s) 171, 212, 1281
TatI WGTACW 1 cut(s) 879
TauI GCSGC 2 cut(s) 617, 620
TfiI GAWTC 3 cut(s) 998, 1303, 1490
Tru1I TTAA 4 cut(s) 435, 764, 1035, 1546
Tru9I TTAA 4 cut(s) 435, 764, 1035, 1546
TscAI CASTG 3 cut(s) 972, 1491, 1523
TseFI GTSAC 2 cut(s) 76, 184
Tsp45I GTSAC 2 cut(s) 76, 184
TspDTI ATGAA 5 cut(s) 562, 688, 914, 1280, 1313
TspGWI ACGGA 6 cut(s) 100, 108, 210, 214, 906, 1188
TspRI CASTG 3 cut(s) 972, 1491, 1523
VneI GTGCAC 1 cut(s) 690
VpaK11BI GGWCC 1 cut(s) 1259
XapI RAATTY 2 cut(s) 171, 212
XcmI CCANNNNNNNNNTGG 3 cut(s) 451, 572, 1397
XhoI CTCGAG 1 cut(s) 740
XmnI GAANNNNTTC 1 cut(s) 997
XspI CTAG 5 cut(s) 362, 470, 722, 1151, 1214
Zsp2I ATGCAT 1 cut(s) 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.