Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004330

Physical Location & Seq

Genomic Coordinates Forward (+)

33748136 .. 33750074

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0325200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCCACGTGGTAATGTGATGAGACGGACTCTTTCCTTCAAAAACCGAAAAAAGAAACCCGTCTCCTCTGATCTCACAAATTCTGGAAGCCTGAGATCGATCATGAAGCTCCAGCCAACACAAGTCGAAGAGAAACCCAAATCCGATGTGGGATTCGGATCAGGATCCGACGGCCAGCGAAAGAAGCGGCGTGGAGCTGTAGATGTGGAAGTCTATATTGGATATGAAGACAGTTATCCACTTTTAGAGTTTGAACCTGATGAATGTCTGATATGCGGTCAGATCACTACACACGGCACTCCATGGTGTCCGTATAAGGAATTCGTCCCACATGATGCATCTCTTCCTCCTGGCATTCAAAGAGTTTGCAGGTGTTGCGGTAAGAGGGATGGCCACCCTGGTGAGGATTGGGAAGCCTGTGCTATTCTTAAGAGGTGTACAGATTGTGGTACCTTAGGTGAGCACTGGAATGGGGACTCAGACTGTCCGACCAAGACTGGTAAGCCCCGGTGCACCGAAGAGACCGAAGAGGAAAAGCCAGATAGCTATAAACAAACTGGTCGGATCTTTCTGTTTCTTGACGAGGATGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

198

Amino Acids

22.29

Weight (kDa)

5.69

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004330)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34580 AT1G34580
fragaria_vesca	FvH4_5g37380 FvH4_5g37380 FvH4_5g37390
malus_domestica	MD08G1182300.v1.1 MD15G1368000.v1.1
prunus_persica	Prupe.1G516200_v2.0.a1
pyrus_communis	pycom08g15610 pycom15g32990
rosa_chinensis	RchiOBHm_Chr7g0239051 RchiOBHm_Chr7g0239061
rosa_laevigata	RLG00000000785 RLG00000000787
rosa_multiflora	Rmu_sc0004605.1_g000001 Rmu_ssc0000306.1_g000001
rosa_roxburghii	Rroxscaffold_3G00221330
rosa_rugosa	Rorug07G0325000 Rorug07G0325100 Rorug07G0325200 Rorug07G0325300 Rorug07G0325400.1
rosa_samantha	Rh7AG479800 Rh7AG479900 Rh7BG452600 Rh7BG452800 Rh7CG497300 Rh7CG497400 Rh7DG464800 Rh7DG465000
rosa_wichuraiana	Rw7G040120 Rw7G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	360
Acc36I	ACCTGC	1 cut(s)	360
Acc65I	GGTACC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	449
AciI	CCGC	3 cut(s)	187, 276, 378
AclWI	GGATC	4 cut(s)	159, 166, 172, 572
AcoI	YGGCCR	2 cut(s)	172, 391
AcsI	RAATTY	2 cut(s)	79, 320
AcvI	CACGTG	1 cut(s)	8
AfaI	GTAC	2 cut(s)	439, 451
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	3 cut(s)	40, 254, 359
AjnI	CCWGG	2 cut(s)	349, 397
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AleI	CACNNNNGTG	1 cut(s)	399
AluBI	AGCT	3 cut(s)	109, 197, 546
AluI	AGCT	3 cut(s)	109, 197, 546
Alw21I	GWGCWC	2 cut(s)	465, 515
Alw26I	GTCTC	3 cut(s)	16, 67, 515
Alw44I	GTGCAC	1 cut(s)	511
AlwI	GGATC	4 cut(s)	159, 166, 172, 572
AoxI	GGCC	2 cut(s)	172, 391
ApaLI	GTGCAC	1 cut(s)	511
ApoI	RAATTY	2 cut(s)	79, 320
Asp718I	GGTACC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	2 cut(s)	413, 470
AxyI	CCTNAGG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	515
BalI	TGGCCA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	449
BbrPI	CACGTG	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	465, 515
BccI	CCATC	1 cut(s)	383
BceAI	ACGGC	2 cut(s)	187, 310
BciT130I	CCWGG	2 cut(s)	351, 399
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	3 cut(s)	16, 67, 515
BfaI	CTAG	1 cut(s)	595
BfmI	CTRYAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	428
BfuAI	ACCTGC	1 cut(s)	360
BisI	GCNGC	1 cut(s)	188
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	3 cut(s)	351, 399, 508
BmiI	GGNNCC	2 cut(s)	166, 451
BmrFI	CCNGG	3 cut(s)	351, 399, 508
BmsI	GCATC	2 cut(s)	325, 347
BpiI	GAAGAC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpmI	CTGGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	508
Bsa29I	ATCGAT	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	8
BsaBI	GATNNNNATC	2 cut(s)	157, 163
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	302, 397, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse1I	ACTGG	3 cut(s)	470, 502, 562
Bse21I	CCTNAGG	1 cut(s)	454
Bse8I	GATNNNNATC	2 cut(s)	157, 163
BseBI	CCWGG	2 cut(s)	351, 399
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	3 cut(s)	302, 397, 506
BseGI	GGATG	2 cut(s)	394, 592
BseJI	GATNNNNATC	2 cut(s)	157, 163
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	83, 492
BseNI	ACTGG	3 cut(s)	470, 502, 562
BseRI	GAGGAG	1 cut(s)	55
BseSI	GKGCMC	1 cut(s)	515
BshFI	GGCC	2 cut(s)	174, 393
BshNI	GGYRCC	1 cut(s)	449
BshVI	ATCGAT	1 cut(s)	98
BsiHKAI	GWGCWC	2 cut(s)	465, 515
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	2 cut(s)	311, 488
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	3 cut(s)	16, 67, 515
BsmBI	CGTCTC	2 cut(s)	16, 67
BsmFI	GGGAC	2 cut(s)	311, 488
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	2 cut(s)	174, 393
Bso31I	GGTCTC	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	465, 515
Bsp1407I	TGTACA	1 cut(s)	437
Bsp143I	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	3 cut(s)	187, 276, 378
BspANI	GGCC	2 cut(s)	174, 393
BspCNI	CTCAG	2 cut(s)	84, 491
BspDI	ATCGAT	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	166, 451
BspMI	ACCTGC	1 cut(s)	360
BspPI	GGATC	4 cut(s)	159, 166, 172, 572
BspT107I	GGYRCC	1 cut(s)	449
BspTI	CTTAAG	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	515
BsrGI	TGTACA	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	470, 502, 562
BssECI	CCNNGG	3 cut(s)	302, 397, 506
BssMI	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	351, 399
Bst4CI	ACNGT	2 cut(s)	233, 485
Bst6I	CTCTTC	4 cut(s)	123, 348, 513, 522
BstAFI	CTTAAG	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstAUI	TGTACA	1 cut(s)	437
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	3 cut(s)	92, 454, 478
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	394, 592
BstKTI	GATC	7 cut(s)	73, 98, 102, 161, 167, 285, 567
BstMAI	GTCTC	3 cut(s)	16, 67, 515
BstMBI	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 375
BstNI	CCWGG	2 cut(s)	351, 399
BstSCI	CCNGG	3 cut(s)	349, 397, 506
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	515
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	2 cut(s)	164, 564
BstYI	RGATCY	2 cut(s)	164, 564
Bsu15I	ATCGAT	1 cut(s)	98
Bsu36I	CCTNAGG	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	174, 393
BsuTUI	ATCGAT	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	394, 592
BtsIMutI	CAGTG	1 cut(s)	463
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	98
Csp6I	GTAC	2 cut(s)	438, 450
CviAII	CATG	3 cut(s)	103, 303, 332
CviQI	GTAC	2 cut(s)	438, 450
DdeI	CTNAG	3 cut(s)	92, 454, 478
DpnI	GATC	7 cut(s)	72, 97, 101, 160, 166, 284, 566
DpnII	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
EaeI	YGGCCR	2 cut(s)	172, 391
Eam1104I	CTCTTC	4 cut(s)	123, 348, 513, 522
EarI	CTCTTC	4 cut(s)	123, 348, 513, 522
Eco130I	CCWWGG	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	515
Eco72I	CACGTG	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	349, 397
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	302
Esp3I	CGTCTC	2 cut(s)	16, 67
FaeI	CATG	3 cut(s)	106, 306, 335
FaiI	YATR	8 cut(s)	104, 216, 225, 274, 304, 315, 333, 549
FaqI	GGGAC	2 cut(s)	311, 488
FatI	CATG	3 cut(s)	102, 302, 331
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	595
GluI	GCNGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	174, 393
HapII	CCGG	1 cut(s)	508
Hin1II	CATG	3 cut(s)	106, 306, 335
HinfI	GANTC	3 cut(s)	28, 153, 476
HpaII	CCGG	1 cut(s)	508
HphI	GGTGA	2 cut(s)	413, 470
Hpy166II	GTNNAC	2 cut(s)	438, 513
Hpy188I	TCNGA	9 cut(s)	70, 145, 158, 169, 270, 282, 481, 489, 564
Hpy188III	TCNNGA	4 cut(s)	84, 103, 162, 578
Hpy8I	GTNNAC	2 cut(s)	438, 513
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	233, 485
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	338, 369, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 375
HpyF3I	CTNAG	3 cut(s)	92, 454, 478
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	3 cut(s)	106, 306, 335
KpnI	GGTACC	1 cut(s)	453
Kzo9I	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
LmnI	GCTCC	2 cut(s)	114, 194
LweI	GCATC	2 cut(s)	325, 347
MaeI	CTAG	1 cut(s)	595
MaeII	ACGT	1 cut(s)	7
MalI	GATC	7 cut(s)	72, 97, 101, 160, 166, 284, 566
MboI	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
MboII	GAAGA	5 cut(s)	140, 239, 335, 530, 539
MflI	RGATCY	2 cut(s)	164, 564
MhlI	GDGCHC	2 cut(s)	465, 515
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	2 cut(s)	79, 320
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	2 cut(s)	22, 470
MmeI	TCCRAC	3 cut(s)	192, 512, 542
MnlI	CCTC	8 cut(s)	76, 357, 378, 397, 426, 523, 577, 583
Mox20I	TGGCCA	1 cut(s)	393
Mph1103I	ATGCAT	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	2 cut(s)	399, 468
Msp20I	TGGCCA	1 cut(s)	393
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	3 cut(s)	351, 399, 508
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	351, 399
MwoI	GCNNNNNNNGC	2 cut(s)	184, 375
NciI	CCSGG	1 cut(s)	508
NcoI	CCATGG	1 cut(s)	302
NdeII	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
NlaIII	CATG	3 cut(s)	106, 306, 335
NlaIV	GGNNCC	2 cut(s)	166, 451
NsiI	ATGCAT	1 cut(s)	340
OliI	CACNNNNGTG	1 cut(s)	399
PagI	TCATGA	1 cut(s)	102
PaqCI	CACCTGC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	22, 470
PmaCI	CACGTG	1 cut(s)	8
PmlI	CACGTG	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	22, 470
Ppu21I	YACGTR	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	349, 397
PspCI	CACGTG	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	349, 397
PspN4I	GGNNCC	2 cut(s)	166, 451
PsuI	RGATCY	2 cut(s)	164, 564
RsaI	GTAC	2 cut(s)	439, 451
RsaNI	GTAC	2 cut(s)	438, 450
RseI	CAYNNNNRTG	2 cut(s)	399, 468
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	1 cut(s)	188
Sau3AI	GATC	7 cut(s)	70, 95, 99, 158, 164, 282, 564
SchI	GAGTC	2 cut(s)	22, 470
ScrFI	CCNGG	3 cut(s)	351, 399, 508
SduI	GDGCHC	2 cut(s)	465, 515
SetI	ASST	9 cut(s)	10, 111, 199, 259, 374, 437, 455, 460, 548
SfaNI	GCATC	2 cut(s)	325, 347
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	2 cut(s)	399, 468
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	2 cut(s)	79, 320
SsiI	CCGC	3 cut(s)	187, 276, 378
SspMI	CTAG	1 cut(s)	595
StyD4I	CCNGG	3 cut(s)	349, 397, 506
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	233, 485
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	98, 126
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	2 cut(s)	79, 320
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	119, 240, 276
TspGWI	ACGGA	2 cut(s)	40, 300
TspRI	CASTG	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	428
VneI	GTGCAC	1 cut(s)	511
XapI	RAATTY	2 cut(s)	79, 320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	1 cut(s)	595
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.