FvH4_5g37770

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016863
Physical Location & Seq
Forward (+)
27808505 .. 27809932
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37770.t1

Sequence Viewer

Length: 834 bp
ATGGCGGAGCGGGTCCCACCTCCCGGAAACGGCAAGGATGAGTACTCCGAACCGCAAAAACCTAATGAAATGTTCGAACAAACAGCCTCATCATCCACAGCTAGGGCATTAGTACCACCATCCCAAGAGTTAGTCCCCCACAACCAATCTCAATACGCCACCTTCGAGTCCGGCACCTACGTTGTCCAAGTCCCCAAGGATCAAATCTACCGCATCCCTCCACCTGAAAATGCCACCATCGTCGAACGCCACCGAGATCCGTCTAAAAAGAAGAAACCGGTATGCTGCAACTTCATCTGTCTCGGCATCCTTGGTTTCTTTCTCCTATTCATCATTTTGCTCATCACTGGGCTTTACGTGTCCGTGACCATGTCGAAAGACCCTAGATTTTCCGTCCAACGACTCGTCTACAACAACAAAACTAAGTCGCATCGACCGGACTACACCATAACGTTGAAGTCTCAAAATCCGAATTCCCAAGTGACCGTTCTATACAAGAAAGGCGGAGACGACGCCTTCCTTAATCTTAAGACGCAAGAAATCGCCACAGCTACTTACCCGTCTTTCGAACAAGATGGTGGAAACTCAAAAGAGTTTGCTTTGATCTTTCATGGCTCCAAGATTAAGTTGCCTAAAGACATTGAGAAAAGTGGCACGAGTAGCAAACAGAAAGTCCATGTCAAGTTTTCTCTGAGCATGGACATCCCGGGGCGGATGCGTAGGGGGGCCTTGAAGAAAAGCATGATCTTTCATGTCGAATGCGATTTTACGGTGGATACATTGGTGAAGGGGACTCGAGTTCTGAACCAAGAATGTCGTACAAACAGAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

278

Amino Acids

31.21

Weight (kDa)

9.44

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37770
malus_domestica MD08G1180500.v1.1 MD15G1366200.v1.1
prunus_persica Prupe.1G513900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0239521
rosa_laevigata RLG00000000748
rosa_multiflora Rmu_sc0003379.1_g000018
rosa_roxburghii Rroxscaffold_3G00220870
rosa_rugosa Rorug07G0328400
rosa_samantha Rh7AG481900 Rh7BG455000 Rh7CG499900 Rh7DG468100
rosa_wichuraiana Rw7G040380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 10
AccI GTMKAC 1 cut(s) 408
AciI CCGC 6 cut(s) 5, 10, 53, 211, 504, 712
AclI AACGTT 1 cut(s) 452
AclWI GGATC 2 cut(s) 207, 251
AcsI RAATTY 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 3 cut(s) 44, 114, 820
AfiI CCNNNNNNNGG 3 cut(s) 23, 29, 102
AflII CTTAAG 1 cut(s) 527
AflIII ACRYGT 1 cut(s) 357
AgeI ACCGGT 1 cut(s) 277
AgsI TTSAA 2 cut(s) 457, 733
AjuI GAANNNNNNNTTGG 2 cut(s) 471, 503
AluBI AGCT 2 cut(s) 101, 551
AluI AGCT 2 cut(s) 101, 551
Alw26I GTCTC 3 cut(s) 305, 465, 501
AlwI GGATC 2 cut(s) 207, 251
Ama87I CYCGRG 2 cut(s) 706, 795
AoxI GGCC 1 cut(s) 726
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 472
ArsI GACNNNNNNTTYG 2 cut(s) 657, 689
AsiGI ACCGGT 1 cut(s) 277
AspS9I GGNCC 2 cut(s) 13, 726
AsuC2I CCSGG 3 cut(s) 24, 707, 708
AsuHPI GGTGA 1 cut(s) 796
AsuII TTCGAA 2 cut(s) 75, 567
AvaI CYCGRG 2 cut(s) 706, 795
AvaII GGWCC 1 cut(s) 13
BaeI ACNNNNGTAYC 2 cut(s) 768, 801
BanI GGYRCC 1 cut(s) 173
BauI CACGAG 1 cut(s) 655
BbvI GCAGC 1 cut(s) 272
BccI CCATC 3 cut(s) 127, 245, 569
BceAI ACGGC 1 cut(s) 46
BciVI GTATCC 1 cut(s) 769
BcnI CCSGG 3 cut(s) 24, 707, 708
BcoDI GTCTC 3 cut(s) 305, 465, 501
BfaI CTAG 2 cut(s) 102, 384
BfrI CTTAAG 1 cut(s) 527
BfuI GTATCC 1 cut(s) 769
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 3 cut(s) 24, 707, 708
Bme18I GGWCC 1 cut(s) 13
BmeT110I CYCGRG 2 cut(s) 706, 795
BmgT120I GGNCC 2 cut(s) 13, 726
BmiI GGNNCC 5 cut(s) 14, 15, 175, 616, 727
BmrFI CCNGG 3 cut(s) 24, 707, 708
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 4 cut(s) 222, 315, 439, 705
BmuI ACTGGG 1 cut(s) 357
Bpu14I TTCGAA 2 cut(s) 75, 567
BpuMI CCSGG 3 cut(s) 24, 707, 708
BsaAI YACGTR 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 4 cut(s) 195, 310, 706, 707
BsaWI WCCGGW 2 cut(s) 277, 436
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 29, 102
Bse118I RCCGGY 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 352
BseDI CCNNGG 4 cut(s) 195, 310, 706, 707
BseGI GGATG 7 cut(s) 43, 92, 119, 213, 306, 702, 720
BseLI CCNNNNNNNGG 3 cut(s) 23, 29, 102
BseMII CTCAG 1 cut(s) 683
BseNI ACTGG 1 cut(s) 352
BseXI GCAGC 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 1 cut(s) 728
BshNI GGYRCC 1 cut(s) 173
BshTI ACCGGT 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 437
BsiHKCI CYCGRG 2 cut(s) 706, 795
BsiSI CCGG 5 cut(s) 24, 171, 278, 437, 707
BslFI GGGAC 3 cut(s) 119, 176, 805
BslI CCNNNNNNNGG 3 cut(s) 23, 29, 102
BsmAI GTCTC 3 cut(s) 305, 465, 501
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 3 cut(s) 119, 176, 805
BsmI GAATGC 1 cut(s) 764
BsnI GGCC 1 cut(s) 728
BsoBI CYCGRG 2 cut(s) 706, 795
Bsp119I TTCGAA 2 cut(s) 75, 567
Bsp143I GATC 4 cut(s) 199, 256, 603, 744
BspACI CCGC 6 cut(s) 5, 10, 53, 211, 504, 712
BspANI GGCC 1 cut(s) 728
BspCNI CTCAG 1 cut(s) 684
BspLI GGNNCC 5 cut(s) 14, 15, 175, 616, 727
BspPI GGATC 2 cut(s) 207, 251
BspT104I TTCGAA 2 cut(s) 75, 567
BspT107I GGYRCC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 277
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 277
BssECI CCNNGG 4 cut(s) 195, 310, 706, 707
BssMI GATC 4 cut(s) 199, 256, 603, 744
BssNI GRCGYC 1 cut(s) 513
BssSI CACGAG 1 cut(s) 655
BssT1I CCWWGG 2 cut(s) 195, 310
Bst2BI CACGAG 1 cut(s) 655
Bst4CI ACNGT 2 cut(s) 487, 772
BstACI GRCGYC 1 cut(s) 513
BstAFI CTTAAG 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 358
BstBI TTCGAA 2 cut(s) 75, 567
BstDEI CTNAG 2 cut(s) 423, 692
BstF5I GGATG 7 cut(s) 43, 92, 119, 213, 306, 702, 720
BstKTI GATC 4 cut(s) 202, 259, 606, 747
BstMAI GTCTC 3 cut(s) 305, 465, 501
BstMBI GATC 4 cut(s) 199, 256, 603, 744
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 22, 705, 706
BstV1I GCAGC 1 cut(s) 272
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 769
BsuRI GGCC 1 cut(s) 728
BtsCI GGATG 7 cut(s) 43, 92, 119, 213, 306, 702, 720
BtsIMutI CAGTG 1 cut(s) 345
Cfr10I RCCGGY 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 13, 726
Cfr9I CCCGGG 1 cut(s) 706
CseI GACGC 2 cut(s) 521, 541
Csp6I GTAC 3 cut(s) 43, 113, 819
CspAI ACCGGT 1 cut(s) 277
CviAII CATG 6 cut(s) 370, 611, 677, 697, 742, 752
CviJI RGCY 6 cut(s) 86, 101, 352, 551, 615, 728
CviKI_1 RGCY 6 cut(s) 86, 101, 352, 551, 615, 728
CviQI GTAC 3 cut(s) 43, 113, 819
DdeI CTNAG 2 cut(s) 423, 692
DpnI GATC 4 cut(s) 201, 258, 605, 746
DpnII GATC 4 cut(s) 199, 256, 603, 744
EciI GGCGGA 3 cut(s) 20, 519, 727
Eco130I CCWWGG 2 cut(s) 195, 310
Eco47I GGWCC 1 cut(s) 13
Eco88I CYCGRG 2 cut(s) 706, 795
EcoO109I RGGNCCY 2 cut(s) 13, 726
EcoRI GAATTC 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 195, 310
ErhI CCWWGG 2 cut(s) 195, 310
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 6 cut(s) 373, 614, 680, 700, 745, 755
FaqI GGGAC 3 cut(s) 119, 176, 805
FatI CATG 6 cut(s) 369, 610, 676, 696, 741, 751
FauI CCCGC 1 cut(s) 3
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 7 cut(s) 50, 79, 106, 200, 293, 689, 727
Fsp4HI GCNGC 1 cut(s) 286
FspBI CTAG 2 cut(s) 102, 384
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 728
HapII CCGG 5 cut(s) 24, 171, 278, 437, 707
HgaI GACGC 2 cut(s) 521, 541
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 6 cut(s) 373, 614, 680, 700, 745, 755
HinfI GANTC 3 cut(s) 167, 402, 793
HpaII CCGG 5 cut(s) 24, 171, 278, 437, 707
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 4 cut(s) 49, 471, 693, 804
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 2 cut(s) 245, 515
HpyAV CCTTC 3 cut(s) 172, 526, 781
HpyCH4III ACNGT 2 cut(s) 487, 772
HpyCH4IV ACGT 3 cut(s) 180, 357, 452
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 660
HpyF3I CTNAG 2 cut(s) 423, 692
HpySE526I ACGT 3 cut(s) 180, 357, 452
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 6 cut(s) 373, 614, 680, 700, 745, 755
KflI GGGWCCC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 199, 256, 603, 744
LmnI GCTCC 2 cut(s) 7, 620
LpnPI CCDG 7 cut(s) 37, 184, 237, 291, 333, 450, 720
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 4 cut(s) 222, 315, 439, 705
MaeI CTAG 2 cut(s) 102, 384
MaeII ACGT 3 cut(s) 180, 357, 452
MaeIII GTNAC 2 cut(s) 364, 481
MalI GATC 4 cut(s) 201, 258, 605, 746
MbiI CCGCTC 1 cut(s) 10
MboI GATC 4 cut(s) 199, 256, 603, 744
MboII GAAGA 2 cut(s) 283, 745
MflI RGATCY 1 cut(s) 256
MluCI AATT 1 cut(s) 472
MlyI GAGTC 3 cut(s) 176, 396, 787
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 3 cut(s) 30, 97, 228
MseI TTAA 3 cut(s) 522, 528, 624
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 5 cut(s) 24, 171, 278, 437, 707
MspR9I CCNGG 3 cut(s) 24, 707, 708
Mva1269I GAATGC 1 cut(s) 764
MwoI GCNNNNNNNGC 1 cut(s) 660
NciI CCSGG 3 cut(s) 24, 707, 708
NdeII GATC 4 cut(s) 199, 256, 603, 744
NlaIII CATG 6 cut(s) 373, 614, 680, 700, 745, 755
NlaIV GGNNCC 5 cut(s) 14, 15, 175, 616, 727
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 364, 481
NspV TTCGAA 2 cut(s) 75, 567
PaeR7I CTCGAG 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 1 cut(s) 764
PflFI GACNNNGTC 1 cut(s) 370
PfoI TCCNGGA 1 cut(s) 22
PinAI ACCGGT 1 cut(s) 277
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 3 cut(s) 175, 396, 787
PpsI GAGTC 3 cut(s) 175, 396, 787
Ppu21I YACGTR 1 cut(s) 358
PpuMI RGGWCCY 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 452
Psp5II RGGWCCY 1 cut(s) 13
PspN4I GGNNCC 5 cut(s) 14, 15, 175, 616, 727
PspPI GGNCC 2 cut(s) 13, 726
PspPPI RGGWCCY 1 cut(s) 13
PspXI VCTCGAGB 1 cut(s) 795
PsuI RGATCY 1 cut(s) 256
PsyI GACNNNGTC 1 cut(s) 370
RsaI GTAC 3 cut(s) 44, 114, 820
RsaNI GTAC 3 cut(s) 43, 113, 819
SaqAI TTAA 3 cut(s) 522, 528, 624
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 4 cut(s) 199, 256, 603, 744
Sau96I GGNCC 2 cut(s) 13, 726
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 3 cut(s) 176, 396, 787
ScrFI CCNGG 3 cut(s) 24, 707, 708
SfaNI GCATC 4 cut(s) 222, 315, 439, 705
Sfr274I CTCGAG 1 cut(s) 795
SfuI TTCGAA 2 cut(s) 75, 567
SinI GGWCC 1 cut(s) 13
SlaI CTCGAG 1 cut(s) 795
SmaI CCCGGG 1 cut(s) 708
SmlI CTYRAG 2 cut(s) 527, 795
SmoI CTYRAG 2 cut(s) 527, 795
Sse9I AATT 1 cut(s) 472
SsiI CCGC 6 cut(s) 5, 10, 53, 211, 504, 712
SspMI CTAG 2 cut(s) 102, 384
StyD4I CCNGG 3 cut(s) 22, 705, 706
StyI CCWWGG 2 cut(s) 195, 310
TaaI ACNGT 2 cut(s) 487, 772
TaiI ACGT 3 cut(s) 183, 360, 455
TaqI TCGA 8 cut(s) 75, 165, 243, 374, 433, 567, 756, 796
TasI AATT 1 cut(s) 472
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 3 cut(s) 522, 528, 624
Tru9I TTAA 3 cut(s) 522, 528, 624
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 2 cut(s) 364, 481
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 2 cut(s) 364, 481
TspDTI ATGAA 5 cut(s) 81, 283, 319, 599, 740
TspGWI ACGGA 3 cut(s) 249, 352, 382
TspMI CCCGGG 1 cut(s) 706
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 370
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 795
XmaI CCCGGG 1 cut(s) 706
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 2 cut(s) 102, 384
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.