Prupe.1G513900_v2.0.a1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016863
Physical Location & Seq
Reverse (-)
42304507 .. 42305325
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G513900.1

Sequence Viewer

Length: 819 bp
ATGGCGGAGCGGGCCCTACCTGCCGGCGACGATGACCCCGTCCCTACAACATCTCCCAAACACCCCGAATTCATCCCACCTCCGCTACCCCCACCAAACTCCCAACAATTGATCCTCTCCAATTCAAACGGCTCCACCGCCACCTTCCGCTCCGGCACCTACATTGTCCAGGTCCCCAAGGACCAAATCTACCGCATGCCCCCGCCCGAACACGCCACCATTGTTGAACGACACCGGGACTCGGGTGTCAACAAAAAGAGTTGCTCCTATTGTTGCCTCGGCATCATTGCTTTCATTGTCCTATTAATCATCACCCTGGTGGCAGTTATTTTGACCATGTTGGCCAAGTCCGGAGACCCCAAATTCAGCGTCGAACGCGTGGTTGTCAAGGGCAAATCGGGGCGGCCAGACTACGACCTGACGTTGGAAGCCCGAAACCCTAACTCAAGAGTGGCGATTGTGTACAAGGACGGTGGTGGAGCTAGCCTTTATTTCAAGCAAAAAAAGATAGCGAATGGAAAATACCCTTCTCTCTACCAAGGCAGCGGCAAATCCAAAGAGGTTGCCCTTGTCCTCCATGGCTCCAACATGAAATTGCCTAAGGAGATTGAGAAAAGCTTGAAAAGTAGTTACAGCAGCACATATAAAAAAGGGCATCGTGTGAGCTTGTCCCTGAACATGGACATTCCGGCACGGATGAGAATTGGGACGTTAAATAGTAGAAGCAGGAAATTTCATGTGACGTGTGACATAACGGTGGATACATTGGCAAAAGGGACCAAGGTTCTGAAACAGGAATGTCAAACCGAACGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

273

Amino Acids

29.91

Weight (kDa)

9.74

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37770
malus_domestica MD08G1180500.v1.1 MD15G1366200.v1.1
prunus_persica Prupe.1G513900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0239521
rosa_laevigata RLG00000000748
rosa_multiflora Rmu_sc0003379.1_g000018
rosa_roxburghii Rroxscaffold_3G00220870
rosa_rugosa Rorug07G0328400
rosa_samantha Rh7AG481900 Rh7BG455000 Rh7CG499900 Rh7DG468100
rosa_wichuraiana Rw7G040380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 155
AccBSI CCGCTC 2 cut(s) 10, 150
AccII CGCG 1 cut(s) 378
AccIII TCCGGA 1 cut(s) 350
AciI CCGC 9 cut(s) 5, 10, 83, 138, 148, 193, 203, 403, 546
AclWI GGATC 1 cut(s) 106
AcoI YGGCCR 2 cut(s) 342, 404
AcsI RAATTY 3 cut(s) 68, 362, 731
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 241, 424, 679
AflIII ACRYGT 2 cut(s) 376, 743
AgsI TTSAA 4 cut(s) 126, 227, 496, 622
AjiI CACGTC 1 cut(s) 744
AjnI CCWGG 2 cut(s) 168, 315
AleI CACNNNNGTG 1 cut(s) 317
AluBI AGCT 3 cut(s) 482, 618, 666
AluI AGCT 3 cut(s) 482, 618, 666
Alw26I GTCTC 1 cut(s) 348
AlwI GGATC 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 241
Aor13HI TCCGGA 1 cut(s) 350
AoxI GGCC 3 cut(s) 12, 342, 404
ApaI GGGCCC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 543, 636
ApoI RAATTY 3 cut(s) 68, 362, 731
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AseI ATTAAT 1 cut(s) 305
AspS9I GGNCC 5 cut(s) 12, 13, 172, 181, 777
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 304
AsuNHI GCTAGC 1 cut(s) 482
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 3 cut(s) 172, 181, 777
AxyI CCTNAGG 1 cut(s) 600
BaeGI GKGCMC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 344
BanI GGYRCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 16
BbvI GCAGC 2 cut(s) 555, 648
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 170, 317
BciVI GTATCC 1 cut(s) 754
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 1 cut(s) 483
BfuAI ACCTGC 1 cut(s) 28
BfuI GTATCC 1 cut(s) 754
BisI GCNGC 4 cut(s) 404, 544, 547, 637
BlsI GCNGC 4 cut(s) 405, 545, 548, 638
Bme1390I CCNGG 3 cut(s) 170, 236, 317
Bme18I GGWCC 3 cut(s) 172, 181, 777
BmeT110I CYCGRG 1 cut(s) 241
BmgBI CACGTC 1 cut(s) 744
BmgT120I GGNCC 5 cut(s) 12, 13, 172, 181, 777
BmiI GGNNCC 6 cut(s) 14, 133, 157, 174, 583, 778
BmrFI CCNGG 3 cut(s) 170, 236, 317
BmsI GCATC 2 cut(s) 291, 664
BmtI GCTAGC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 348
BsaJI CCNNGG 6 cut(s) 177, 277, 315, 538, 577, 780
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 424, 679
Bse118I RCCGGY 1 cut(s) 23
Bse21I CCTNAGG 1 cut(s) 600
Bse3DI GCAATG 1 cut(s) 285
BseAI TCCGGA 1 cut(s) 350
BseBI CCWGG 2 cut(s) 170, 317
BseDI CCNNGG 6 cut(s) 177, 277, 315, 538, 577, 780
BseGI GGATG 2 cut(s) 72, 702
BseLI CCNNNNNNNGG 3 cut(s) 241, 424, 679
BseMI GCAATG 1 cut(s) 285
BseSI GKGCMC 1 cut(s) 16
BseXI GCAGC 2 cut(s) 555, 648
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 3 cut(s) 14, 344, 406
BshNI GGYRCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 5 cut(s) 24, 153, 235, 351, 689
BslFI GGGAC 6 cut(s) 26, 158, 251, 655, 721, 790
BslI CCNNNNNNNGG 3 cut(s) 241, 424, 679
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 6 cut(s) 26, 158, 251, 655, 721, 790
BsnI GGCC 3 cut(s) 14, 344, 406
Bso31I GGTCTC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 241
Bsp120I GGGCCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 1 cut(s) 111
Bsp19I CCATGG 1 cut(s) 577
BspACI CCGC 9 cut(s) 5, 10, 83, 138, 148, 193, 203, 403, 546
BspANI GGCC 3 cut(s) 14, 344, 406
BspEI TCCGGA 1 cut(s) 350
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 6 cut(s) 14, 133, 157, 174, 583, 778
BspMI ACCTGC 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 486
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 348
BsrBI CCGCTC 2 cut(s) 10, 150
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 462
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 6 cut(s) 177, 277, 315, 538, 577, 780
BssMI GATC 1 cut(s) 111
BssT1I CCWWGG 4 cut(s) 177, 538, 577, 780
Bst2UI CCWGG 2 cut(s) 170, 317
Bst4CI ACNGT 2 cut(s) 473, 757
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 4 cut(s) 12, 25, 197, 484
BstDEI CTNAG 1 cut(s) 600
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 2 cut(s) 72, 702
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 1 cut(s) 114
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 375
BstNI CCWGG 2 cut(s) 170, 317
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 3 cut(s) 168, 234, 315
BstSLI GKGCMC 1 cut(s) 16
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 555, 648
Bsu36I CCTNAGG 1 cut(s) 600
BsuI GTATCC 1 cut(s) 754
BsuRI GGCC 3 cut(s) 14, 344, 406
BtgI CCRYGG 1 cut(s) 577
BtrI CACGTC 1 cut(s) 744
BtsCI GGATG 2 cut(s) 72, 702
BveI ACCTGC 1 cut(s) 28
Cac8I GCNNGC 4 cut(s) 12, 25, 197, 484
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 5 cut(s) 12, 13, 172, 181, 777
CseI GACGC 1 cut(s) 358
Csp6I GTAC 1 cut(s) 463
CspCI CAANNNNNGTGG 4 cut(s) 205, 240, 454, 489
CviAII CATG 6 cut(s) 196, 337, 578, 589, 679, 737
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 1 cut(s) 600
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 2 cut(s) 342, 404
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 4 cut(s) 177, 538, 577, 780
Eco24I GRGCYC 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 348
Eco47I GGWCC 3 cut(s) 172, 181, 777
Eco81I CCTNAGG 1 cut(s) 600
Eco88I CYCGRG 1 cut(s) 241
EcoO109I RGGNCCY 2 cut(s) 13, 172
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 168, 315
EcoT14I CCWWGG 4 cut(s) 177, 538, 577, 780
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 4 cut(s) 177, 538, 577, 780
FaeI CATG 6 cut(s) 199, 340, 581, 592, 682, 740
FaiI YATR 9 cut(s) 197, 338, 579, 590, 643, 645, 680, 738, 752
FaqI GGGAC 6 cut(s) 26, 158, 251, 655, 721, 790
FatI CATG 6 cut(s) 195, 336, 577, 588, 678, 736
FauI CCCGC 2 cut(s) 3, 210
Fnu4HI GCNGC 4 cut(s) 404, 544, 547, 637
FokI GGATG 2 cut(s) 59, 709
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 4 cut(s) 404, 544, 547, 637
FspBI CTAG 1 cut(s) 483
GluI GCNGC 4 cut(s) 404, 544, 547, 637
HaeIII GGCC 3 cut(s) 14, 344, 406
HapII CCGG 5 cut(s) 24, 153, 235, 351, 689
HgaI GACGC 1 cut(s) 358
Hin1II CATG 6 cut(s) 199, 340, 581, 592, 682, 740
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 1 cut(s) 239
HpaII CCGG 5 cut(s) 24, 153, 235, 351, 689
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 2 cut(s) 250, 463
Hpy188I TCNGA 1 cut(s) 789
Hpy188III TCNNGA 2 cut(s) 351, 447
Hpy8I GTNNAC 2 cut(s) 250, 463
Hpy99I CGWCG 2 cut(s) 32, 374
HpyAV CCTTC 2 cut(s) 154, 537
HpyCH4III ACNGT 2 cut(s) 473, 757
HpyCH4IV ACGT 4 cut(s) 422, 710, 743, 811
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 375
HpyF3I CTNAG 1 cut(s) 600
HpySE526I ACGT 4 cut(s) 422, 710, 743, 811
Hsp92II CATG 6 cut(s) 199, 340, 581, 592, 682, 740
Kpn2I TCCGGA 1 cut(s) 350
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 6 cut(s) 7, 137, 155, 269, 479, 587
Lsp1109I GCAGC 2 cut(s) 555, 648
LweI GCATC 2 cut(s) 291, 664
MaeI CTAG 1 cut(s) 483
MaeII ACGT 4 cut(s) 422, 710, 743, 811
MaeIII GTNAC 3 cut(s) 629, 739, 746
MalI GATC 1 cut(s) 113
MbiI CCGCTC 2 cut(s) 10, 150
MboI GATC 1 cut(s) 111
MfeI CAATTG 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 16
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 7 cut(s) 68, 107, 121, 362, 593, 702, 731
MluI ACGCGT 1 cut(s) 376
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 405, 609
MnlI CCTC 5 cut(s) 90, 125, 287, 553, 584
Mox20I TGGCCA 1 cut(s) 344
MroI TCCGGA 1 cut(s) 350
MroNI GCCGGC 1 cut(s) 23
MscI TGGCCA 1 cut(s) 344
MseI TTAA 2 cut(s) 305, 713
MslI CAYNNNNRTG 2 cut(s) 317, 755
Msp20I TGGCCA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 546
MspI CCGG 5 cut(s) 24, 153, 235, 351, 689
MspR9I CCNGG 3 cut(s) 170, 236, 317
MunI CAATTG 1 cut(s) 107
MvaI CCWGG 2 cut(s) 170, 317
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 375
NaeI GCCGGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 577
NdeII GATC 1 cut(s) 111
NgoMIV GCCGGC 1 cut(s) 23
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 6 cut(s) 199, 340, 581, 592, 682, 740
NlaIV GGNNCC 6 cut(s) 14, 133, 157, 174, 583, 778
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 739, 746
NspI RCATGY 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 317
PaeI GCATGC 1 cut(s) 199
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PdiI GCCGGC 1 cut(s) 25
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 4 cut(s) 405, 545, 548, 638
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 305
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 168, 315
PspGI CCWGG 2 cut(s) 168, 315
PspN4I GGNNCC 6 cut(s) 14, 133, 157, 174, 583, 778
PspOMI GGGCCC 1 cut(s) 12
PspPI GGNCC 5 cut(s) 12, 13, 172, 181, 777
PspPPI RGGWCCY 1 cut(s) 172
PsyI GACNNNGTC 1 cut(s) 38
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 2 cut(s) 317, 755
SaqAI TTAA 2 cut(s) 305, 713
SatI GCNGC 4 cut(s) 404, 544, 547, 637
Sau3AI GATC 1 cut(s) 111
Sau96I GGNCC 5 cut(s) 12, 13, 172, 181, 777
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 170, 236, 317
SduI GDGCHC 1 cut(s) 16
SfaNI GCATC 2 cut(s) 291, 664
SinI GGWCC 3 cut(s) 172, 181, 777
SmiMI CAYNNNNRTG 2 cut(s) 317, 755
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SphI GCATGC 1 cut(s) 199
Sse9I AATT 7 cut(s) 68, 107, 121, 362, 593, 702, 731
SsiI CCGC 9 cut(s) 5, 10, 83, 138, 148, 193, 203, 403, 546
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 3 cut(s) 168, 234, 315
StyI CCWWGG 4 cut(s) 177, 538, 577, 780
TaaI ACNGT 2 cut(s) 473, 757
TaiI ACGT 4 cut(s) 425, 713, 746, 814
TaqI TCGA 1 cut(s) 372
TasI AATT 7 cut(s) 68, 107, 121, 362, 593, 702, 731
TatI WGTACW 1 cut(s) 462
TauI GCSGC 2 cut(s) 406, 549
Tru1I TTAA 2 cut(s) 305, 713
Tru9I TTAA 2 cut(s) 305, 713
TseFI GTSAC 2 cut(s) 739, 746
TseI GCWGC 2 cut(s) 543, 636
Tsp45I GTSAC 2 cut(s) 739, 746
TspDTI ATGAA 4 cut(s) 61, 283, 605, 725
TspGWI ACGGA 1 cut(s) 709
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 3 cut(s) 172, 181, 777
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 3 cut(s) 68, 362, 731
XceI RCATGY 1 cut(s) 199
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.