Rroxscaffold_3G00220870

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016863
Physical Location & Seq
Reverse (-)
3471181 .. 3472007
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00220870.1

Sequence Viewer

Length: 810 bp
ATGGCGGAGCGGGTCCCAGCTCCCGGAATCGGCAAGGATGAGTACTCCGAACAGCAACCTAATGAAATGATCCAACCAGCAGCCTCATCATCCACATCTAGGGCATTAGTACCACCATCCCAAGAGTTAGTCCCCCACAACCAATCTCAATACGCCACCTTCAGGGCCGGTCCCCAAGGACCAAATCTACCGCATCCCTCCCCCGAAAACGCCTCCATCATCGAACGCCACCGCGATCCGTCCAAAAGGAAGAAACCCCTCTGCTGTAACTTCGTCTGTCTTGGGATCCTCGGTTTCTTTCTCCTATTCATCATTTTGCTCATCGCTGGGCTTTACGTGTCCGTGATCTTCTCCAAAGACCCAAAATTCTCTGTCCAACGCCTCGTGTACAACAACAAAACTAAGTCGCATCGACCGGACTATACCATAACGTTGAAGGCCCAAAACCGAAATTCCCAAGTGGCCATTTTGTACAAGAAAGGCGGTGAGGCCTCCCTTAATCTTAACACGCAAGAAATCGCCACCGCTAGTTACCCGTCTTTTGAACAAGATAGTGGAAAATCAAAAGAGTTTGCTGTAATCTTTCATGGCTCCAAGATTAAGTTGCCTAAAGAGATTCAAAAAAGTAGTACGAGTCCCAAACCAAAAGTCCACGTCAAGTTTTCTCTGGGCATGGACATCCCGGGGCGAATGAGTAAGGGGGCCTTGAAGAGAAGCATGACATTTCGGGTCGATTGCGATTTTACGGTGGATACGTTGGTGAAAGGGACTCGGGTTCTGAACCAGGAATGTCATACAAACAGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

269

Amino Acids

29.93

Weight (kDa)

9.72

Isoelectric Point (pI)

47.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37770
malus_domestica MD08G1180500.v1.1 MD15G1366200.v1.1
prunus_persica Prupe.1G513900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0239521
rosa_laevigata RLG00000000748
rosa_multiflora Rmu_sc0003379.1_g000018
rosa_roxburghii Rroxscaffold_3G00220870
rosa_rugosa Rorug07G0328400
rosa_samantha Rh7AG481900 Rh7BG455000 Rh7CG499900 Rh7DG468100
rosa_wichuraiana Rw7G040380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 10
AccII CGCG 1 cut(s) 234
AciI CCGC 6 cut(s) 5, 10, 191, 232, 483, 525
AclI AACGTT 1 cut(s) 431
AclWI GGATC 4 cut(s) 64, 230, 280, 293
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 365, 451
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 5 cut(s) 44, 111, 389, 473, 631
AfiI CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 4 cut(s) 436, 545, 620, 709
AjiI CACGTC 1 cut(s) 655
AjnI CCWGG 1 cut(s) 783
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwI GGATC 4 cut(s) 64, 230, 280, 293
Ama87I CYCGRG 2 cut(s) 682, 771
AoxI GGCC 5 cut(s) 165, 438, 462, 489, 702
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 365, 451
ArsI GACNNNNNNTTYG 2 cut(s) 633, 665
AspS9I GGNCC 6 cut(s) 13, 165, 170, 179, 439, 702
AsuC2I CCSGG 3 cut(s) 24, 683, 684
AsuHPI GGTGA 2 cut(s) 497, 772
AvaI CYCGRG 2 cut(s) 682, 771
AvaII GGWCC 3 cut(s) 13, 170, 179
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BalI TGGCCA 1 cut(s) 464
BamHI GGATCC 1 cut(s) 285
BauI CACGAG 1 cut(s) 383
BbvI GCAGC 1 cut(s) 92
BccI CCATC 2 cut(s) 124, 224
BciT130I CCWGG 1 cut(s) 785
BciVI GTATCC 1 cut(s) 745
BcnI CCSGG 3 cut(s) 24, 683, 684
BfaI CTAG 2 cut(s) 99, 528
BfuI GTATCC 1 cut(s) 745
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 4 cut(s) 24, 683, 684, 785
Bme18I GGWCC 3 cut(s) 13, 170, 179
BmeT110I CYCGRG 2 cut(s) 682, 771
BmgBI CACGTC 1 cut(s) 655
BmgT120I GGNCC 6 cut(s) 13, 165, 170, 179, 439, 702
BmiI GGNNCC 6 cut(s) 14, 15, 172, 287, 592, 703
BmrFI CCNGG 4 cut(s) 24, 683, 684, 785
BmsI GCATC 2 cut(s) 202, 418
BpuMI CCSGG 3 cut(s) 24, 683, 684
BsaAI YACGTR 1 cut(s) 337
BsaJI CCNNGG 4 cut(s) 175, 289, 682, 683
BsaWI WCCGGW 1 cut(s) 415
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
Bse118I RCCGGY 1 cut(s) 167
BseBI CCWGG 1 cut(s) 785
BseDI CCNNGG 4 cut(s) 175, 289, 682, 683
BseGI GGATG 5 cut(s) 43, 89, 116, 193, 678
BseLI CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 2 cut(s) 16, 326
Bsh1236I CGCG 1 cut(s) 234
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 5 cut(s) 167, 440, 464, 491, 704
BsiEI CGRYCG 1 cut(s) 416
BsiHKCI CYCGRG 2 cut(s) 682, 771
BsiSI CCGG 4 cut(s) 24, 168, 416, 683
BslFI GGGAC 4 cut(s) 116, 156, 621, 781
BslI CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
BsmFI GGGAC 4 cut(s) 116, 156, 621, 781
BsnI GGCC 5 cut(s) 167, 440, 464, 491, 704
BsoBI CYCGRG 2 cut(s) 682, 771
Bsp1407I TGTACA 2 cut(s) 387, 471
Bsp143I GATC 4 cut(s) 69, 235, 285, 345
BspACI CCGC 6 cut(s) 5, 10, 191, 232, 483, 525
BspANI GGCC 5 cut(s) 167, 440, 464, 491, 704
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 6 cut(s) 14, 15, 172, 287, 592, 703
BspPI GGATC 4 cut(s) 64, 230, 280, 293
BsrBI CCGCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 2 cut(s) 387, 471
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 175, 289, 682, 683
BssMI GATC 4 cut(s) 69, 235, 285, 345
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 383
Bst2UI CCWGG 1 cut(s) 785
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 1 cut(s) 704
BstAUI TGTACA 2 cut(s) 387, 471
BstBAI YACGTR 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 402
BstF5I GGATG 5 cut(s) 43, 89, 116, 193, 678
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 4 cut(s) 72, 238, 288, 348
BstMBI GATC 4 cut(s) 69, 235, 285, 345
BstMCI CGRYCG 1 cut(s) 416
BstNI CCWGG 1 cut(s) 785
BstSCI CCNGG 4 cut(s) 22, 681, 682, 783
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuI GTATCC 1 cut(s) 745
BsuRI GGCC 5 cut(s) 167, 440, 464, 491, 704
BtgZI GCGATG 1 cut(s) 307
BtrI CACGTC 1 cut(s) 655
BtsCI GGATG 5 cut(s) 43, 89, 116, 193, 678
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 6 cut(s) 13, 165, 170, 179, 439, 702
Cfr9I CCCGGG 1 cut(s) 682
Csp6I GTAC 5 cut(s) 43, 110, 388, 472, 630
CviAII CATG 3 cut(s) 587, 673, 718
CviJI RGCY 9 cut(s) 20, 83, 167, 331, 440, 464, 491, 591, 704
CviKI_1 RGCY 9 cut(s) 20, 83, 167, 331, 440, 464, 491, 591, 704
CviQI GTAC 5 cut(s) 43, 110, 388, 472, 630
DdeI CTNAG 1 cut(s) 402
DpnI GATC 4 cut(s) 71, 237, 287, 347
DpnII GATC 4 cut(s) 69, 235, 285, 345
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 704
EarI CTCTTC 1 cut(s) 704
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 491
Eco47I GGWCC 3 cut(s) 13, 170, 179
Eco57I CTGAAG 1 cut(s) 145
Eco88I CYCGRG 2 cut(s) 682, 771
EcoO109I RGGNCCY 2 cut(s) 13, 702
EcoRII CCWGG 1 cut(s) 783
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 3 cut(s) 590, 676, 721
FaiI YATR 6 cut(s) 423, 428, 588, 674, 719, 795
FalI AAGNNNNNCTT 2 cut(s) 689, 721
FaqI GGGAC 4 cut(s) 116, 156, 621, 781
FatI CATG 3 cut(s) 586, 672, 717
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 5 cut(s) 50, 76, 103, 180, 665
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 99, 528
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 2 cut(s) 20, 330
HaeIII GGCC 5 cut(s) 167, 440, 464, 491, 704
HapII CCGG 4 cut(s) 24, 168, 416, 683
Hin1II CATG 3 cut(s) 590, 676, 721
HinfI GANTC 4 cut(s) 27, 616, 634, 769
HpaII CCGG 4 cut(s) 24, 168, 416, 683
HphI GGTGA 2 cut(s) 497, 772
Hpy166II GTNNAC 2 cut(s) 388, 652
Hpy188I TCNGA 2 cut(s) 49, 780
Hpy8I GTNNAC 2 cut(s) 388, 652
HpyAV CCTTC 2 cut(s) 169, 430
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4IV ACGT 4 cut(s) 336, 431, 654, 755
HpyF3I CTNAG 1 cut(s) 402
HpySE526I ACGT 4 cut(s) 336, 431, 654, 755
Hsp92II CATG 3 cut(s) 590, 676, 721
KflI GGGWCCC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 69, 235, 285, 345
LmnI GCTCC 3 cut(s) 7, 25, 596
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 202, 418
MaeI CTAG 2 cut(s) 99, 528
MaeII ACGT 4 cut(s) 336, 431, 654, 755
MaeIII GTNAC 2 cut(s) 266, 530
MalI GATC 4 cut(s) 71, 237, 287, 347
MbiI CCGCTC 1 cut(s) 10
MboI GATC 4 cut(s) 69, 235, 285, 345
MboII GAAGA 3 cut(s) 262, 340, 721
MflI RGATCY 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 2 cut(s) 365, 451
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 2 cut(s) 643, 763
MmeI TCCRAC 2 cut(s) 97, 400
MnlI CCTC 8 cut(s) 94, 208, 223, 269, 299, 392, 481, 502
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MseI TTAA 3 cut(s) 498, 504, 600
Msp20I TGGCCA 1 cut(s) 464
MspI CCGG 4 cut(s) 24, 168, 416, 683
MspR9I CCNGG 4 cut(s) 24, 683, 684, 785
MvaI CCWGG 1 cut(s) 785
MvnI CGCG 1 cut(s) 234
NciI CCSGG 3 cut(s) 24, 683, 684
NdeII GATC 4 cut(s) 69, 235, 285, 345
NlaIII CATG 3 cut(s) 590, 676, 721
NlaIV GGNNCC 6 cut(s) 14, 15, 172, 287, 592, 703
PceI AGGCCT 1 cut(s) 491
PcsI WCGNNNNNNNCGW 1 cut(s) 752
PfeI GAWTC 2 cut(s) 27, 616
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 2 cut(s) 642, 763
PpsI GAGTC 2 cut(s) 642, 763
Ppu21I YACGTR 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 783
PspFI CCCAGC 2 cut(s) 16, 326
PspGI CCWGG 1 cut(s) 783
PspN4I GGNNCC 6 cut(s) 14, 15, 172, 287, 592, 703
PspPI GGNCC 6 cut(s) 13, 165, 170, 179, 439, 702
PspPPI RGGWCCY 1 cut(s) 13
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 5 cut(s) 44, 111, 389, 473, 631
RsaNI GTAC 5 cut(s) 43, 110, 388, 472, 630
SaqAI TTAA 3 cut(s) 498, 504, 600
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 4 cut(s) 69, 235, 285, 345
Sau96I GGNCC 6 cut(s) 13, 165, 170, 179, 439, 702
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 2 cut(s) 643, 763
ScrFI CCNGG 4 cut(s) 24, 683, 684, 785
SetI ASST 7 cut(s) 22, 61, 161, 339, 434, 657, 758
SfaNI GCATC 2 cut(s) 202, 418
SinI GGWCC 3 cut(s) 13, 170, 179
SmaI CCCGGG 1 cut(s) 684
Sse9I AATT 2 cut(s) 365, 451
SseBI AGGCCT 1 cut(s) 491
SsiI CCGC 6 cut(s) 5, 10, 191, 232, 483, 525
SspMI CTAG 2 cut(s) 99, 528
StuI AGGCCT 1 cut(s) 491
StyD4I CCNGG 4 cut(s) 22, 681, 682, 783
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 748
TaiI ACGT 4 cut(s) 339, 434, 657, 758
TaqI TCGA 3 cut(s) 222, 412, 732
TasI AATT 2 cut(s) 365, 451
TatI WGTACW 3 cut(s) 42, 387, 471
TfiI GAWTC 2 cut(s) 27, 616
Tru1I TTAA 3 cut(s) 498, 504, 600
Tru9I TTAA 3 cut(s) 498, 504, 600
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 78, 298, 575
TspGWI ACGGA 2 cut(s) 228, 331
TspMI CCCGGG 1 cut(s) 682
VpaK11BI GGWCC 3 cut(s) 13, 170, 179
XapI RAATTY 2 cut(s) 365, 451
XmaI CCCGGG 1 cut(s) 682
XspI CTAG 2 cut(s) 99, 528
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.