Rmu_sc0003379.1_g000018

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003379.1
OG0016863
Physical Location & Seq
Forward (+)
53355 .. 54182
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003379.1_g000018.1.cds

Sequence Viewer

Length: 828 bp
atggcggagcgggtcccagctcccggaatcggcaaggatgagtacaccgaacagcaacctaatgaaatgatccaaccagcagcctcatcatccacatctagggcattagtaccaccatcccaagagttagtcccccacaaccaatctcaatacaccaccttcagggccggtacctacgttgtccaggtccccaaggaccaaatctaccgcatccctccccccgaaaacgcctccatcatcgaacgccaccgtgatccgtccaaaaggaagaaacccctctgctgtaacttcgtctgtcttgggatcctcggcttctttctcctattcatcattttgctcatcgccgggctttacgtgtccgtgatcttctccaaagacccaaaattctctgtccaacgcctcgtgtacaacaacaaaactaagtcgcatcgaccggactataccataacgttgaaggcccaaaaccgaaattcccaagtggccattttgtacaagaaaggcggtgaggcctcccttaatcttaacacgcaagaaatcgccaccgctagttacccgtcttttgaacaagatagtggaaaatcaaaagagtttgctttaatctttcatggctccaagattaagttgcctaaagagattcagaaaagtagtacgagttccaaaccaaaagtccacgtcaagttttctctgggcatggacatcccggggcgaatgagtaggggggccttaaagagaagcatgacatttcgggtcgattgcgattttacggtggatacgttggtgaaaggaactcgggttctgaaccaggaatgtcatacaaacaggaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

275

Amino Acids

30.88

Weight (kDa)

9.74

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37770
malus_domestica MD08G1180500.v1.1 MD15G1366200.v1.1
prunus_persica Prupe.1G513900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0239521
rosa_laevigata RLG00000000748
rosa_multiflora Rmu_sc0003379.1_g000018
rosa_roxburghii Rroxscaffold_3G00220870
rosa_rugosa Rorug07G0328400
rosa_samantha Rh7AG481900 Rh7BG455000 Rh7CG499900 Rh7DG468100
rosa_wichuraiana Rw7G040380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 10
AciI CCGC 5 cut(s) 5, 10, 208, 501, 543
AclI AACGTT 1 cut(s) 449
AclWI GGATC 4 cut(s) 64, 248, 298, 311
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 383, 469
AcuI CTGAAG 1 cut(s) 145
AfaI GTAC 6 cut(s) 44, 111, 172, 407, 491, 649
AfiI CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 2 cut(s) 454, 563
AjiI CACGTC 1 cut(s) 673
AjnI CCWGG 2 cut(s) 183, 801
AloI GAACNNNNNNTCC 2 cut(s) 777, 809
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AlwI GGATC 4 cut(s) 64, 248, 298, 311
Ama87I CYCGRG 2 cut(s) 700, 789
AoxI GGCC 5 cut(s) 165, 456, 480, 507, 720
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 383, 469
ArsI GACNNNNNNTTYG 2 cut(s) 651, 683
Asp718I GGTACC 1 cut(s) 170
AspS9I GGNCC 6 cut(s) 13, 165, 187, 196, 457, 720
AsuC2I CCSGG 4 cut(s) 24, 346, 701, 702
AsuHPI GGTGA 2 cut(s) 515, 790
AvaI CYCGRG 2 cut(s) 700, 789
AvaII GGWCC 3 cut(s) 13, 187, 196
BaeI ACNNNNGTAYC 4 cut(s) 162, 195, 762, 795
BalI TGGCCA 1 cut(s) 482
BamHI GGATCC 1 cut(s) 303
BanI GGYRCC 1 cut(s) 170
BauI CACGAG 1 cut(s) 401
BbvI GCAGC 1 cut(s) 92
BccI CCATC 2 cut(s) 124, 242
BciT130I CCWGG 2 cut(s) 185, 803
BciVI GTATCC 1 cut(s) 763
BcnI CCSGG 4 cut(s) 24, 346, 701, 702
BfaI CTAG 2 cut(s) 99, 546
BfuI GTATCC 1 cut(s) 763
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 6 cut(s) 24, 185, 346, 701, 702, 803
Bme18I GGWCC 3 cut(s) 13, 187, 196
BmeT110I CYCGRG 2 cut(s) 700, 789
BmgBI CACGTC 1 cut(s) 673
BmgT120I GGNCC 6 cut(s) 13, 165, 187, 196, 457, 720
BmiI GGNNCC 7 cut(s) 14, 15, 172, 189, 305, 610, 721
BmrFI CCNGG 6 cut(s) 24, 185, 346, 701, 702, 803
BmsI GCATC 2 cut(s) 219, 436
BpuMI CCSGG 4 cut(s) 24, 346, 701, 702
BsaAI YACGTR 1 cut(s) 355
BsaJI CCNNGG 4 cut(s) 192, 307, 700, 701
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
Bse118I RCCGGY 1 cut(s) 167
BseBI CCWGG 2 cut(s) 185, 803
BseDI CCNNGG 4 cut(s) 192, 307, 700, 701
BseGI GGATG 5 cut(s) 43, 89, 116, 210, 696
BseLI CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
BseXI GCAGC 1 cut(s) 92
BseYI CCCAGC 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 5 cut(s) 167, 458, 482, 509, 722
BshNI GGYRCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 434
BsiHKCI CYCGRG 2 cut(s) 700, 789
BsiSI CCGG 5 cut(s) 24, 168, 345, 434, 701
BslFI GGGAC 2 cut(s) 116, 173
BslI CCNNNNNNNGG 4 cut(s) 23, 29, 99, 162
BsmFI GGGAC 2 cut(s) 116, 173
BsnI GGCC 5 cut(s) 167, 458, 482, 509, 722
BsoBI CYCGRG 2 cut(s) 700, 789
Bsp1407I TGTACA 2 cut(s) 405, 489
Bsp143I GATC 4 cut(s) 69, 253, 303, 363
BspACI CCGC 5 cut(s) 5, 10, 208, 501, 543
BspANI GGCC 5 cut(s) 167, 458, 482, 509, 722
BspLI GGNNCC 7 cut(s) 14, 15, 172, 189, 305, 610, 721
BspPI GGATC 4 cut(s) 64, 248, 298, 311
BspT107I GGYRCC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 10
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 2 cut(s) 405, 489
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 192, 307, 700, 701
BssMI GATC 4 cut(s) 69, 253, 303, 363
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 2 cut(s) 185, 803
Bst4CI ACNGT 2 cut(s) 251, 766
BstAUI TGTACA 2 cut(s) 405, 489
BstBAI YACGTR 1 cut(s) 355
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 5 cut(s) 43, 89, 116, 210, 696
BstKTI GATC 4 cut(s) 72, 256, 306, 366
BstMBI GATC 4 cut(s) 69, 253, 303, 363
BstMCI CGRYCG 1 cut(s) 434
BstNI CCWGG 2 cut(s) 185, 803
BstSCI CCNGG 6 cut(s) 22, 183, 344, 699, 700, 801
BstV1I GCAGC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 5 cut(s) 167, 458, 482, 509, 722
BtgZI GCGATG 1 cut(s) 325
BtrI CACGTC 1 cut(s) 673
BtsCI GGATG 5 cut(s) 43, 89, 116, 210, 696
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 6 cut(s) 13, 165, 187, 196, 457, 720
Cfr9I CCCGGG 1 cut(s) 700
Csp6I GTAC 6 cut(s) 43, 110, 171, 406, 490, 648
CviAII CATG 3 cut(s) 605, 691, 736
CviQI GTAC 6 cut(s) 43, 110, 171, 406, 490, 648
DdeI CTNAG 1 cut(s) 420
DpnI GATC 4 cut(s) 71, 255, 305, 365
DpnII GATC 4 cut(s) 69, 253, 303, 363
EaeI YGGCCR 1 cut(s) 480
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 509
Eco47I GGWCC 3 cut(s) 13, 187, 196
Eco57I CTGAAG 1 cut(s) 145
Eco88I CYCGRG 2 cut(s) 700, 789
EcoO109I RGGNCCY 3 cut(s) 13, 187, 720
EcoRII CCWGG 2 cut(s) 183, 801
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 3 cut(s) 608, 694, 739
FaiI YATR 6 cut(s) 441, 446, 606, 692, 737, 813
FaqI GGGAC 2 cut(s) 116, 173
FatI CATG 3 cut(s) 604, 690, 735
FauI CCCGC 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 5 cut(s) 50, 76, 103, 197, 683
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 99, 546
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 20
HaeIII GGCC 5 cut(s) 167, 458, 482, 509, 722
HapII CCGG 5 cut(s) 24, 168, 345, 434, 701
Hin1II CATG 3 cut(s) 608, 694, 739
HinfI GANTC 2 cut(s) 27, 634
HpaII CCGG 5 cut(s) 24, 168, 345, 434, 701
HphI GGTGA 2 cut(s) 515, 790
Hpy166II GTNNAC 3 cut(s) 45, 406, 670
Hpy188I TCNGA 2 cut(s) 639, 798
Hpy8I GTNNAC 3 cut(s) 45, 406, 670
HpyAV CCTTC 2 cut(s) 169, 448
HpyCH4III ACNGT 2 cut(s) 251, 766
HpyCH4IV ACGT 5 cut(s) 177, 354, 449, 672, 773
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 5 cut(s) 177, 354, 449, 672, 773
Hsp92II CATG 3 cut(s) 608, 694, 739
KflI GGGWCCC 1 cut(s) 13
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 4 cut(s) 69, 253, 303, 363
LmnI GCTCC 3 cut(s) 7, 25, 614
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 219, 436
MaeI CTAG 2 cut(s) 99, 546
MaeII ACGT 5 cut(s) 177, 354, 449, 672, 773
MaeIII GTNAC 2 cut(s) 284, 548
MalI GATC 4 cut(s) 71, 255, 305, 365
MbiI CCGCTC 1 cut(s) 10
MboI GATC 4 cut(s) 69, 253, 303, 363
MboII GAAGA 2 cut(s) 280, 358
MflI RGATCY 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 2 cut(s) 383, 469
MluNI TGGCCA 1 cut(s) 482
MmeI TCCRAC 2 cut(s) 97, 418
MnlI CCTC 8 cut(s) 94, 225, 241, 287, 317, 410, 499, 520
Mox20I TGGCCA 1 cut(s) 482
MscI TGGCCA 1 cut(s) 482
MseI TTAA 5 cut(s) 516, 522, 596, 618, 725
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 5 cut(s) 24, 168, 345, 434, 701
MspR9I CCNGG 6 cut(s) 24, 185, 346, 701, 702, 803
MvaI CCWGG 2 cut(s) 185, 803
NciI CCSGG 4 cut(s) 24, 346, 701, 702
NdeII GATC 4 cut(s) 69, 253, 303, 363
NlaIII CATG 3 cut(s) 608, 694, 739
NlaIV GGNNCC 7 cut(s) 14, 15, 172, 189, 305, 610, 721
NmeAIII GCCGAG 1 cut(s) 288
PceI AGGCCT 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 770
PfeI GAWTC 2 cut(s) 27, 634
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 355
PpuMI RGGWCCY 2 cut(s) 13, 187
Psp1406I AACGTT 1 cut(s) 449
Psp5II RGGWCCY 2 cut(s) 13, 187
Psp6I CCWGG 2 cut(s) 183, 801
PspFI CCCAGC 1 cut(s) 16
PspGI CCWGG 2 cut(s) 183, 801
PspN4I GGNNCC 7 cut(s) 14, 15, 172, 189, 305, 610, 721
PspPI GGNCC 6 cut(s) 13, 165, 187, 196, 457, 720
PspPPI RGGWCCY 2 cut(s) 13, 187
PsrI GAACNNNNNNTAC 2 cut(s) 637, 669
PsuI RGATCY 1 cut(s) 303
RsaI GTAC 6 cut(s) 44, 111, 172, 407, 491, 649
RsaNI GTAC 6 cut(s) 43, 110, 171, 406, 490, 648
SaqAI TTAA 5 cut(s) 516, 522, 596, 618, 725
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 4 cut(s) 69, 253, 303, 363
Sau96I GGNCC 6 cut(s) 13, 165, 187, 196, 457, 720
ScrFI CCNGG 6 cut(s) 24, 185, 346, 701, 702, 803
SfaNI GCATC 2 cut(s) 219, 436
SinI GGWCC 3 cut(s) 13, 187, 196
SmaI CCCGGG 1 cut(s) 702
Sse9I AATT 2 cut(s) 383, 469
SseBI AGGCCT 1 cut(s) 509
SsiI CCGC 5 cut(s) 5, 10, 208, 501, 543
SspMI CTAG 2 cut(s) 99, 546
StuI AGGCCT 1 cut(s) 509
StyD4I CCNGG 6 cut(s) 22, 183, 344, 699, 700, 801
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 251, 766
TaiI ACGT 5 cut(s) 180, 357, 452, 675, 776
TaqI TCGA 3 cut(s) 240, 430, 750
TasI AATT 2 cut(s) 383, 469
TatI WGTACW 3 cut(s) 42, 405, 489
TfiI GAWTC 2 cut(s) 27, 634
Tru1I TTAA 5 cut(s) 516, 522, 596, 618, 725
Tru9I TTAA 5 cut(s) 516, 522, 596, 618, 725
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 78, 316, 593
TspGWI ACGGA 2 cut(s) 246, 349
TspMI CCCGGG 1 cut(s) 700
VpaK11BI GGWCC 3 cut(s) 13, 187, 196
XapI RAATTY 2 cut(s) 383, 469
XmaI CCCGGG 1 cut(s) 700
XspI CTAG 2 cut(s) 99, 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.