MD08G1180500.v1.1

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0016863
Physical Location & Seq
Reverse (-)
22322512 .. 22323249
738 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1180500.v1.1.491

Sequence Viewer

Length: 738 bp
ATGGCGGAGCGGGCCCCACCTGATCACCCCGGTACCAATAAGCACTATACTCCTCCTCTGGAACACCCCCAATTCCCACCTCCAACAACGCCCCTGTCGACGTCCCGACAGTTGATCATCTCCCAACCCCAATATCCTTCCGTCGCCACCTTCCGCTCGGGCACCTACATTGTGCAAGTCCCCAAGGACCAAAACTACCACGTGCCCCCACTTGAAAACGCCCACATTTTTGAACGCCACCAGGACCCGTCCCGCAAAAGGAAAAGGCCGCTATGTTGCAACCTTTACTGCATTGGCATCATTGCTTTCATTGTCCTCCTTGTAGTCATGCTCGTAAGAATTTTTTCTATCATGTTCGCCAACTCCGAAAATCCCATATTCAGCATAGAACGTGTTGTTGTACATAGCAAGAGTAATGGACTGCCGGACTACAGCGTGACGTTGAGGGTTCAAAATCCAAATTCGAGACTGGCAATTGTGTACAATGGTGGTGATACTAGCCTTCATTTCAGGCAAAAAACAATAGCTAACGGAAAATACCCGTCTCTCACTCAAGGGGTGGGCAAATCAGAAGAGGTTACTATCGTCATTCACGGCGCAAACGTTATTTTGCCTAAAGAGATCAAGAAAAGCTTGGGAGTTAGTGAGAGCAGCAGCAACACGAAGAAAGTGCAGGTTAGTTTGTCCCCTCAACATGAACATTCCAGCGAGATTGAGTATTGGGACGTTGAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

246

Amino Acids

27.5

Weight (kDa)

9.2

Isoelectric Point (pI)

45.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g37770
malus_domestica MD08G1180500.v1.1 MD15G1366200.v1.1
prunus_persica Prupe.1G513900_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0239521
rosa_laevigata RLG00000000748
rosa_multiflora Rmu_sc0003379.1_g000018
rosa_roxburghii Rroxscaffold_3G00220870
rosa_rugosa Rorug07G0328400
rosa_samantha Rh7AG481900 Rh7BG455000 Rh7CG499900 Rh7DG468100
rosa_wichuraiana Rw7G040380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 104
Acc36I ACCTGC 1 cut(s) 664
Acc65I GGTACC 1 cut(s) 32
AccB1I GGYRCC 2 cut(s) 32, 161
AccBSI CCGCTC 2 cut(s) 10, 156
AccI GTMKAC 1 cut(s) 98
AciI CCGC 5 cut(s) 5, 10, 154, 253, 269
AclI AACGTT 1 cut(s) 603
AcsI RAATTY 2 cut(s) 339, 460
AcvI CACGTG 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 3 cut(s) 34, 402, 482
AfiI CCNNNNNNNGG 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 391
AgsI TTSAA 4 cut(s) 215, 233, 452, 731
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 2 cut(s) 527, 633
AluI AGCT 2 cut(s) 527, 633
Alw26I GTCTC 2 cut(s) 460, 549
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 2 cut(s) 12, 266
ApaI GGGCCC 1 cut(s) 16
ApeKI GCWGC 2 cut(s) 651, 654
ApoI RAATTY 2 cut(s) 339, 460
Asp700I GAANNNNTTC 1 cut(s) 343
Asp718I GGTACC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 4 cut(s) 12, 13, 187, 244
AsuC2I CCSGG 1 cut(s) 30
AsuHPI GGTGA 2 cut(s) 17, 503
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 2 cut(s) 187, 244
BaeGI GKGCMC 3 cut(s) 16, 164, 207
BaeI ACNNNNGTAYC 2 cut(s) 16, 49
BanI GGYRCC 2 cut(s) 32, 161
BanII GRGCYC 1 cut(s) 16
BbrPI CACGTG 1 cut(s) 202
BbvI GCAGC 2 cut(s) 663, 666
BceAI ACGGC 1 cut(s) 610
BcgI CGANNNNNNTGC 2 cut(s) 652, 686
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 2 cut(s) 22, 114
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 460, 549
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 430
BfuAI ACCTGC 1 cut(s) 664
BisI GCNGC 3 cut(s) 269, 652, 655
BlsI GCNGC 3 cut(s) 270, 653, 656
Bme1390I CCNGG 2 cut(s) 30, 242
Bme18I GGWCC 2 cut(s) 187, 244
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 4 cut(s) 12, 13, 187, 244
BmiI GGNNCC 5 cut(s) 14, 15, 34, 163, 246
BmrFI CCNGG 2 cut(s) 30, 242
BmsI GCATC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 30
BsaAI YACGTR 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 28, 183
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 474
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 28, 183
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 474
BseRI GAGGAG 2 cut(s) 42, 45
BseSI GKGCMC 3 cut(s) 16, 164, 207
BseXI GCAGC 2 cut(s) 663, 666
BsgI GTGCAG 1 cut(s) 692
BshFI GGCC 2 cut(s) 14, 268
BshNI GGYRCC 2 cut(s) 32, 161
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 30, 425
BslFI GGGAC 4 cut(s) 88, 164, 235, 670
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 460, 549
BsmBI CGTCTC 1 cut(s) 549
BsmFI GGGAC 4 cut(s) 88, 164, 235, 670
BsnI GGCC 2 cut(s) 14, 268
BsoBI CYCGRG 1 cut(s) 157
Bsp120I GGGCCC 1 cut(s) 12
Bsp1286I GDGCHC 3 cut(s) 16, 164, 207
Bsp1407I TGTACA 2 cut(s) 400, 480
Bsp143I GATC 3 cut(s) 22, 114, 621
BspACI CCGC 5 cut(s) 5, 10, 154, 253, 269
BspANI GGCC 2 cut(s) 14, 268
BspLI GGNNCC 5 cut(s) 14, 15, 34, 163, 246
BspMI ACCTGC 1 cut(s) 664
BspT107I GGYRCC 2 cut(s) 32, 161
BsrBI CCGCTC 2 cut(s) 10, 156
BsrDI GCAATG 1 cut(s) 300
BsrGI TGTACA 2 cut(s) 400, 480
BsrI ACTGG 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 28, 183
BssMI GATC 3 cut(s) 22, 114, 621
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 1 cut(s) 101
BstAUI TGTACA 2 cut(s) 400, 480
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 12
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 3 cut(s) 25, 117, 624
BstMAI GTCTC 2 cut(s) 460, 549
BstMBI GATC 3 cut(s) 22, 114, 621
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 28, 240
BstSFI CTRYAG 1 cut(s) 430
BstSLI GKGCMC 3 cut(s) 16, 164, 207
BstV1I GCAGC 2 cut(s) 663, 666
BsuRI GGCC 2 cut(s) 14, 268
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 12
CfoI GCGC 1 cut(s) 599
Cfr13I GGNCC 4 cut(s) 12, 13, 187, 244
Csp6I GTAC 3 cut(s) 33, 401, 481
CviAII CATG 3 cut(s) 328, 352, 695
CviJI RGCY 5 cut(s) 14, 268, 501, 527, 633
CviKI_1 RGCY 5 cut(s) 14, 268, 501, 527, 633
CviQI GTAC 3 cut(s) 33, 401, 481
DpnI GATC 3 cut(s) 24, 116, 623
DpnII GATC 3 cut(s) 22, 114, 621
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 187, 244
Eco72I CACGTG 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 157
EcoO109I RGGNCCY 2 cut(s) 13, 244
EcoRII CCWGG 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 3 cut(s) 331, 355, 698
FaiI YATR 8 cut(s) 48, 274, 329, 353, 377, 386, 405, 696
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FaqI GGGAC 4 cut(s) 88, 164, 235, 670
FatI CATG 3 cut(s) 327, 351, 694
FauI CCCGC 2 cut(s) 3, 260
FbaI TGATCA 2 cut(s) 22, 114
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 269, 652, 655
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 269, 652, 655
FspBI CTAG 1 cut(s) 498
GlaI GCGC 1 cut(s) 598
GluI GCNGC 3 cut(s) 269, 652, 655
HaeIII GGCC 2 cut(s) 14, 268
HapII CCGG 2 cut(s) 30, 425
HhaI GCGC 1 cut(s) 599
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 3 cut(s) 331, 355, 698
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 631
HpaII CCGG 2 cut(s) 30, 425
HphI GGTGA 2 cut(s) 17, 503
Hpy166II GTNNAC 2 cut(s) 99, 481
Hpy188I TCNGA 2 cut(s) 367, 571
Hpy188III TCNNGA 4 cut(s) 59, 105, 465, 625
Hpy8I GTNNAC 2 cut(s) 99, 481
Hpy99I CGWCG 2 cut(s) 103, 146
HpyAV CCTTC 3 cut(s) 147, 160, 512
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 6 cut(s) 101, 201, 391, 440, 603, 726
HpyCH4V TGCA 4 cut(s) 175, 279, 291, 673
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 6 cut(s) 101, 201, 391, 440, 603, 726
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 3 cut(s) 331, 355, 698
HspAI GCGC 1 cut(s) 597
KpnI GGTACC 1 cut(s) 36
Ksp22I TGATCA 2 cut(s) 22, 114
Kzo9I GATC 3 cut(s) 22, 114, 621
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 2 cut(s) 663, 666
LweI GCATC 1 cut(s) 306
MaeI CTAG 1 cut(s) 498
MaeII ACGT 6 cut(s) 101, 201, 391, 440, 603, 726
MaeIII GTNAC 2 cut(s) 436, 577
MalI GATC 3 cut(s) 24, 116, 623
MbiI CCGCTC 2 cut(s) 10, 156
MboI GATC 3 cut(s) 22, 114, 621
MboII GAAGA 2 cut(s) 584, 676
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 3 cut(s) 16, 164, 207
MluCI AATT 4 cut(s) 71, 339, 460, 474
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 7 cut(s) 63, 66, 90, 326, 438, 568, 699
MroXI GAANNNNTTC 1 cut(s) 343
MspI CCGG 2 cut(s) 30, 425
MspR9I CCNGG 2 cut(s) 30, 242
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 30
NdeII GATC 3 cut(s) 22, 114, 621
NlaIII CATG 3 cut(s) 331, 355, 698
NlaIV GGNNCC 5 cut(s) 14, 15, 34, 163, 246
NmuCI GTSAC 1 cut(s) 436
PcsI WCGNNNNNNNCGW 3 cut(s) 95, 363, 600
PdmI GAANNNNTTC 1 cut(s) 343
PkrI GCNGC 3 cut(s) 270, 653, 656
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
Ppu21I YACGTR 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 244
Psp1406I AACGTT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 240
PspCI CACGTG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 5 cut(s) 14, 15, 34, 163, 246
PspOMI GGGCCC 1 cut(s) 12
PspPI GGNCC 4 cut(s) 12, 13, 187, 244
PspPPI RGGWCCY 1 cut(s) 244
RsaI GTAC 3 cut(s) 34, 402, 482
RsaNI GTAC 3 cut(s) 33, 401, 481
SalI GTCGAC 1 cut(s) 97
SatI GCNGC 3 cut(s) 269, 652, 655
Sau3AI GATC 3 cut(s) 22, 114, 621
Sau96I GGNCC 4 cut(s) 12, 13, 187, 244
ScrFI CCNGG 2 cut(s) 30, 242
SduI GDGCHC 3 cut(s) 16, 164, 207
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 430
SinI GGWCC 2 cut(s) 187, 244
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 4 cut(s) 71, 339, 460, 474
SsiI CCGC 5 cut(s) 5, 10, 154, 253, 269
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 2 cut(s) 28, 240
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 6 cut(s) 104, 204, 394, 443, 606, 729
TaqI TCGA 2 cut(s) 98, 464
TasI AATT 4 cut(s) 71, 339, 460, 474
TatI WGTACW 2 cut(s) 400, 480
TauI GCSGC 1 cut(s) 271
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 2 cut(s) 651, 654
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 298, 494, 711
TspGWI ACGGA 2 cut(s) 130, 546
VpaK11BI GGWCC 2 cut(s) 187, 244
XapI RAATTY 2 cut(s) 339, 460
XmiI GTMKAC 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 1 cut(s) 498
ZraI GACGTC 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.