FvH4_5g39640

Heparan-alpha-glucosaminide N-acetyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005188
Physical Location & Seq
Reverse (-)
29232732 .. 29237696
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39640.t8

Sequence Viewer

Length: 1329 bp
ATGTCTCCGGTCATTGACGTCGCTCCTCTTCTCCACCCCTACAGAGGCAGAGACACAAACAGAGACACGGACAGAGACGGAATCGTACCATCCAACGGCGAAGGAGCTCCGACAACTGATCAACGCATCGTCTCACTCGACGTCTTCCGTGGCCTCACCGTTGCGTTGATGATTTTGGTTGACGGTGCTGGAGGAGCTTTCCCATCCATAAATCACTCTCCCTGGTTCGGTGTTACACTTGCAGATTTTGTAATGCCATTTTTCCTTTTTCTTGTCGGTGTCTCTGTTGCTCTAGCATTCAAGAAAATATCAAACAAGACAACTGCCACGAAGAAAGTCATGCTTCGAGCTATGAATCTCTTCCTCTTGGGCTTGTTACTGCAAGGTGGGTATTTCCATGGGCGTAAACATTTAACATATGGAGTTGATGTCAGAACAATACGTTGGCTGGGTGTACTACAGAGGATATCGATTGGATATCTGTTGGCTTCAATGTCAGAAATCTGGCTTGTTAACAACATAAGGGTCGACTCACTGGTTGATTTTGCTAGGAAGTACTACATTCAGTGGTTGTTTGCTATTGGATTGTGCTCATTTTATATGAGCTTGCTGTATGGCCTCTTAGTTCCAAGTTGGGAATATGAAGCTCCACGCATGAACTTGTCTTCTCTTACCTCTATTACTCAAACTATTTATTGTGATGTGAGGAGTAGTCTTCAACCTCCTTGCAATGTTGTTGGTTTCATTGATCGGATTATATTGGGTGAGCATCATCTATATCAACATCCCGTTTACAGAAGAACCAAGGAATGCAGTATTAATTCTCCCGACTATGGACCTCTGCCACCTGATTCTCCTGGCTGGTGCTTTGCTCCATTTGACCCAGAGGGCATATTAAGTTCTCTGATGGCTGCTGTTACTTGTTTTGTGGGATTGCACTTTGGGCACATATTATTGCATTTTAAGGACCAAAACCAAAGAGTAATGTTATGGTGCATGTCTTCCTTTCCTCTTGTAATCTTTGGTTTTGTTTTGGAGATGCTAGGTATTCCTTTCTGTAAACCACTGTACACACTGAGCTATACATGCATTACAGCGGGAGCATCGGGATTGATCTTAAGTATTATCTTCTATATAGTTGATGTCAAACATTTCAGAAAGCCCACATTATTGTTGCAGTGGATGGGGATGAATGCGCTCCTTATATATGTTTTTGCTGCTTGTGACCTTTTCTCAGTAGGATTACAGGGTTTCTATTGGCGGTCCCCTGAGAACAACTTGGTTGATGGAGCCGAAGCATTATTGCAGCTTGACCCTTTACTACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

443

Amino Acids

49.58

Weight (kDa)

7.59

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 21, 144
AccI GTMKAC 1 cut(s) 528
AciI CCGC 2 cut(s) 1097, 1261
AcyI GRCGYC 2 cut(s) 18, 141
AfaI GTAC 4 cut(s) 87, 456, 557, 1070
AfiI CCNNNNNNNGG 4 cut(s) 44, 95, 227, 833
AflII CTTAAG 1 cut(s) 1117
AgsI TTSAA 3 cut(s) 301, 492, 719
AjnI CCWGG 2 cut(s) 221, 856
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AluBI AGCT 7 cut(s) 107, 197, 350, 606, 647, 1080, 1309
AluI AGCT 7 cut(s) 107, 197, 350, 606, 647, 1080, 1309
Alw21I GWGCWC 2 cut(s) 109, 593
Alw26I GTCTC 6 cut(s) 9, 45, 57, 69, 136, 286
AoxI GGCC 2 cut(s) 151, 616
ApeKI GCWGC 3 cut(s) 911, 1217, 1306
AseI ATTAAT 1 cut(s) 819
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 1198
AspS9I GGNCC 3 cut(s) 836, 967, 1263
AsuHPI GGTGA 2 cut(s) 148, 776
AvaII GGWCC 3 cut(s) 836, 967, 1263
BaeGI GKGCMC 1 cut(s) 948
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 4 cut(s) 136, 657, 707, 993
Bbv12I GWGCWC 2 cut(s) 109, 593
BbvI GCAGC 3 cut(s) 898, 1204, 1318
BccI CCATC 5 cut(s) 97, 211, 901, 1177, 1280
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 223, 858
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 6 cut(s) 9, 45, 57, 69, 136, 286
BfaI CTAG 3 cut(s) 293, 549, 1043
BfmI CTRYAG 2 cut(s) 40, 458
BfrI CTTAAG 1 cut(s) 1117
BisI GCNGC 3 cut(s) 912, 1218, 1307
BlsI GCNGC 3 cut(s) 913, 1219, 1308
BmcAI AGTACT 1 cut(s) 557
Bme1390I CCNGG 2 cut(s) 223, 858
Bme18I GGWCC 3 cut(s) 836, 967, 1263
BmgT120I GGNCC 3 cut(s) 836, 967, 1263
BmiI GGNNCC 2 cut(s) 1265, 1291
BmrFI CCNGG 2 cut(s) 223, 858
BmsI GCATC 4 cut(s) 135, 778, 1029, 1112
BpiI GAAGAC 4 cut(s) 136, 657, 707, 993
BpmI CTGGAG 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 470
BsaHI GRCGYC 2 cut(s) 18, 141
BsaJI CCNNGG 4 cut(s) 148, 221, 397, 804
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 95, 227, 833
Bse1I ACTGG 1 cut(s) 540
Bse3DI GCAATG 1 cut(s) 736
BseBI CCWGG 2 cut(s) 223, 858
BseCI ATCGAT 1 cut(s) 470
BseDI CCNNGG 4 cut(s) 148, 221, 397, 804
BseGI GGATG 5 cut(s) 89, 203, 784, 1188, 1194
BseLI CCNNNNNNNGG 4 cut(s) 44, 95, 227, 833
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 3 cut(s) 1067, 1248, 1260
BseNI ACTGG 1 cut(s) 540
BseRI GAGGAG 3 cut(s) 15, 207, 721
BseSI GKGCMC 1 cut(s) 948
BseXI GCAGC 3 cut(s) 898, 1204, 1318
BseYI CCCAGC 1 cut(s) 448
BshFI GGCC 2 cut(s) 153, 618
BshVI ATCGAT 1 cut(s) 470
BsiHKAI GWGCWC 2 cut(s) 109, 593
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 1249
BslI CCNNNNNNNGG 4 cut(s) 44, 95, 227, 833
BsmAI GTCTC 6 cut(s) 9, 45, 57, 69, 136, 286
BsmBI CGTCTC 2 cut(s) 69, 136
BsmFI GGGAC 1 cut(s) 1249
BsmI GAATGC 3 cut(s) 296, 815, 1198
BsnI GGCC 2 cut(s) 153, 618
Bsp1286I GDGCHC 3 cut(s) 109, 593, 948
Bsp1407I TGTACA 1 cut(s) 1068
Bsp143I GATC 3 cut(s) 118, 748, 1113
Bsp19I CCATGG 1 cut(s) 397
BspACI CCGC 2 cut(s) 1097, 1261
BspANI GGCC 2 cut(s) 153, 618
BspCNI CTCAG 3 cut(s) 1068, 1247, 1261
BspDI ATCGAT 1 cut(s) 470
BspLI GGNNCC 2 cut(s) 1265, 1291
BspTI CTTAAG 1 cut(s) 1117
BsrDI GCAATG 1 cut(s) 736
BsrGI TGTACA 1 cut(s) 1068
BsrI ACTGG 1 cut(s) 540
BssECI CCNNGG 4 cut(s) 148, 221, 397, 804
BssMI GATC 3 cut(s) 118, 748, 1113
BssNI GRCGYC 2 cut(s) 18, 141
BssT1I CCWWGG 2 cut(s) 397, 804
Bst2UI CCWGG 2 cut(s) 223, 858
Bst4CI ACNGT 4 cut(s) 160, 185, 1068, 1326
Bst6I CTCTTC 2 cut(s) 33, 365
BstACI GRCGYC 2 cut(s) 18, 141
BstAFI CTTAAG 1 cut(s) 1117
BstAUI TGTACA 1 cut(s) 1068
BstC8I GCNNGC 1 cut(s) 608
BstDEI CTNAG 4 cut(s) 622, 1076, 1234, 1269
BstDSI CCRYGG 2 cut(s) 148, 397
BstF5I GGATG 5 cut(s) 89, 203, 784, 1188, 1194
BstHHI GCGC 1 cut(s) 1198
BstKTI GATC 3 cut(s) 121, 751, 1116
BstMAI GTCTC 6 cut(s) 9, 45, 57, 69, 136, 286
BstMBI GATC 3 cut(s) 118, 748, 1113
BstMWI GCNNNNNNNGC 3 cut(s) 194, 943, 1086
BstNI CCWGG 2 cut(s) 223, 858
BstNSI RCATGY 2 cut(s) 1000, 1089
BstSCI CCNGG 2 cut(s) 221, 856
BstSFI CTRYAG 2 cut(s) 40, 458
BstSLI GKGCMC 1 cut(s) 948
BstV1I GCAGC 3 cut(s) 898, 1204, 1318
BstV2I GAAGAC 4 cut(s) 136, 657, 707, 993
Bsu15I ATCGAT 1 cut(s) 470
BsuRI GGCC 2 cut(s) 153, 618
BsuTUI ATCGAT 1 cut(s) 470
BtgI CCRYGG 2 cut(s) 148, 397
BtsCI GGATG 5 cut(s) 89, 203, 784, 1188, 1194
BtsI GCAGTG 1 cut(s) 1184
BtsIMutI CAGTG 5 cut(s) 533, 572, 1064, 1073, 1184
Cac8I GCNNGC 1 cut(s) 608
CfoI GCGC 1 cut(s) 1198
Cfr13I GGNCC 3 cut(s) 836, 967, 1263
ClaI ATCGAT 1 cut(s) 470
Csp6I GTAC 4 cut(s) 86, 455, 556, 1069
CviAII CATG 5 cut(s) 340, 398, 655, 997, 1086
CviQI GTAC 4 cut(s) 86, 455, 556, 1069
DdeI CTNAG 4 cut(s) 622, 1076, 1234, 1269
DpnI GATC 3 cut(s) 120, 750, 1115
DpnII GATC 3 cut(s) 118, 748, 1113
Eam1104I CTCTTC 2 cut(s) 33, 365
EarI CTCTTC 2 cut(s) 33, 365
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 397, 804
Eco24I GRGCYC 1 cut(s) 109
Eco32I GATATC 2 cut(s) 468, 479
Eco47I GGWCC 3 cut(s) 836, 967, 1263
Eco53kI GAGCTC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 221, 856
EcoRV GATATC 2 cut(s) 468, 479
EcoT14I CCWWGG 2 cut(s) 397, 804
EcoT22I ATGCAT 1 cut(s) 1091
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 397, 804
Esp3I CGTCTC 2 cut(s) 69, 136
FaeI CATG 5 cut(s) 343, 401, 658, 1000, 1089
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 1249
FatI CATG 5 cut(s) 339, 397, 654, 996, 1085
FauI CCCGC 1 cut(s) 1090
FauNDI CATATG 1 cut(s) 418
FbaI TGATCA 1 cut(s) 118
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 3 cut(s) 912, 1218, 1307
FokI GGATG 5 cut(s) 76, 190, 771, 1195, 1201
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 3 cut(s) 912, 1218, 1307
FspBI CTAG 3 cut(s) 293, 549, 1043
GlaI GCGC 1 cut(s) 1197
GluI GCNGC 3 cut(s) 912, 1218, 1307
GsaI CCCAGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 2 cut(s) 153, 618
HapII CCGG 1 cut(s) 8
HhaI GCGC 1 cut(s) 1198
Hin1I GRCGYC 2 cut(s) 18, 141
Hin1II CATG 5 cut(s) 343, 401, 658, 1000, 1089
Hin6I GCGC 1 cut(s) 1196
HinP1I GCGC 1 cut(s) 1196
HincII GTYRAC 3 cut(s) 181, 514, 529
HindII GTYRAC 3 cut(s) 181, 514, 529
HinfI GANTC 4 cut(s) 81, 355, 530, 851
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 148, 776
Hpy166II GTNNAC 8 cut(s) 181, 407, 455, 514, 529, 793, 1061, 1071
Hpy188I TCNGA 6 cut(s) 111, 434, 499, 753, 906, 1157
Hpy188III TCNNGA 3 cut(s) 301, 827, 1107
Hpy8I GTNNAC 8 cut(s) 181, 407, 455, 514, 529, 793, 1061, 1071
Hpy99I CGWCG 2 cut(s) 23, 143
HpyAV CCTTC 1 cut(s) 95
HpyCH4III ACNGT 4 cut(s) 160, 185, 1068, 1326
HpyCH4IV ACGT 3 cut(s) 18, 141, 442
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 943, 1086
HpyF3I CTNAG 4 cut(s) 622, 1076, 1234, 1269
HpySE526I ACGT 3 cut(s) 18, 141, 442
Hsp92I GRCGYC 2 cut(s) 18, 141
Hsp92II CATG 5 cut(s) 343, 401, 658, 1000, 1089
HspAI GCGC 1 cut(s) 1196
Ksp22I TGATCA 1 cut(s) 118
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 3 cut(s) 118, 748, 1113
LmnI GCTCC 9 cut(s) 28, 104, 112, 194, 652, 877, 1100, 1203, 1289
Lsp1109I GCAGC 3 cut(s) 898, 1204, 1318
LweI GCATC 4 cut(s) 135, 778, 1029, 1112
MaeI CTAG 3 cut(s) 293, 549, 1043
MaeII ACGT 3 cut(s) 18, 141, 442
MaeIII GTNAC 4 cut(s) 232, 375, 916, 1223
MalI GATC 3 cut(s) 120, 750, 1115
MboI GATC 3 cut(s) 118, 748, 1113
MboII GAAGA 9 cut(s) 20, 136, 343, 352, 657, 707, 810, 993, 1120
MhlI GDGCHC 3 cut(s) 109, 593, 948
MluCI AATT 1 cut(s) 820
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 2 cut(s) 117, 134
Mph1103I ATGCAT 1 cut(s) 1091
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 6 cut(s) 413, 513, 819, 896, 963, 1118
MspA1I CMGCKG 1 cut(s) 1097
MspCI CTTAAG 1 cut(s) 1117
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 223, 858
Mva1269I GAATGC 3 cut(s) 296, 815, 1198
MvaI CCWGG 2 cut(s) 223, 858
MwoI GCNNNNNNNGC 3 cut(s) 194, 943, 1086
NcoI CCATGG 1 cut(s) 397
NdeI CATATG 1 cut(s) 418
NdeII GATC 3 cut(s) 118, 748, 1113
NlaIII CATG 5 cut(s) 343, 401, 658, 1000, 1089
NlaIV GGNNCC 2 cut(s) 1265, 1291
NmuCI GTSAC 1 cut(s) 1223
NsiI ATGCAT 1 cut(s) 1091
NspI RCATGY 2 cut(s) 1000, 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PctI GAATGC 3 cut(s) 296, 815, 1198
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 81, 355, 851
PkrI GCNGC 3 cut(s) 913, 1219, 1308
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
PshBI ATTAAT 1 cut(s) 819
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 221, 856
PspFI CCCAGC 1 cut(s) 448
PspGI CCWGG 2 cut(s) 221, 856
PspN4I GGNNCC 2 cut(s) 1265, 1291
PspPI GGNCC 3 cut(s) 836, 967, 1263
RsaI GTAC 4 cut(s) 87, 456, 557, 1070
RsaNI GTAC 4 cut(s) 86, 455, 556, 1069
SacI GAGCTC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 527
SaqAI TTAA 6 cut(s) 413, 513, 819, 896, 963, 1118
SatI GCNGC 3 cut(s) 912, 1218, 1307
Sau3AI GATC 3 cut(s) 118, 748, 1113
Sau96I GGNCC 3 cut(s) 836, 967, 1263
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 2 cut(s) 223, 858
SduI GDGCHC 3 cut(s) 109, 593, 948
SfaNI GCATC 4 cut(s) 135, 778, 1029, 1112
SfcI CTRYAG 2 cut(s) 40, 458
SinI GGWCC 3 cut(s) 836, 967, 1263
SmlI CTYRAG 1 cut(s) 1117
SmoI CTYRAG 1 cut(s) 1117
Sse9I AATT 1 cut(s) 820
SsiI CCGC 2 cut(s) 1097, 1261
SspMI CTAG 3 cut(s) 293, 549, 1043
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 2 cut(s) 221, 856
StyI CCWWGG 2 cut(s) 397, 804
TaaI ACNGT 4 cut(s) 160, 185, 1068, 1326
TaiI ACGT 3 cut(s) 21, 144, 445
TaqI TCGA 4 cut(s) 138, 346, 470, 528
TasI AATT 1 cut(s) 820
TatI WGTACW 3 cut(s) 454, 555, 1068
TfiI GAWTC 3 cut(s) 81, 355, 851
Tru1I TTAA 6 cut(s) 413, 513, 819, 896, 963, 1118
Tru9I TTAA 6 cut(s) 413, 513, 819, 896, 963, 1118
TscAI CASTG 5 cut(s) 540, 572, 1071, 1080, 1184
TseFI GTSAC 1 cut(s) 1223
TseI GCWGC 3 cut(s) 911, 1217, 1306
Tsp45I GTSAC 1 cut(s) 1223
TspDTI ATGAA 5 cut(s) 368, 657, 671, 733, 1205
TspGWI ACGGA 3 cut(s) 83, 93, 137
TspRI CASTG 5 cut(s) 540, 572, 1071, 1080, 1184
Vha464I CTTAAG 1 cut(s) 1117
VpaK11BI GGWCC 3 cut(s) 836, 967, 1263
VspI ATTAAT 1 cut(s) 819
XceI RCATGY 2 cut(s) 1000, 1089
XmiI GTMKAC 1 cut(s) 528
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 3 cut(s) 293, 549, 1043
ZraI GACGTC 2 cut(s) 19, 142
ZrmI AGTACT 1 cut(s) 557
Zsp2I ATGCAT 1 cut(s) 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.