Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005188

Physical Location & Seq

Genomic Coordinates Reverse (-)

55880663 .. 55885075

Gene Structure 4413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG474400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCTCTCTGTTACCATGCAGAAAATATCAAACAAGACAACTGCCACCAAGAAAGTCATGCTTCGTGCTGTAAATCTCTTCCTCTTGGGGTTGTTACTGCAAGGTGGGTATTTCCATGGGCGTAAACACTTAACATATGGAGTTGATGTCAGAAAGATTCGTTGGCTAGGTGTACTACAGAGGATATCGATTGGATATCTGTTGGCTTCAATGTCGGAAATCTGGCTTGTTAACAACATAATGGTCGACTCACTGGTTGATTTCGCTAGGAAATACTACATTCAGTGGTTGTTTGCTATTGGATTGTGCTCATTTTATATGAGCTTGCTGTATGGTCTCTTAGTTCCAAGTTGGGAATATGAAGCTCCGCGCATGAATTTGTCTGCTCTTACCTCTGGTACTCAAACTATTTATTGTGATGTGAGAAGCAGTCTTCAACCTCCTTGCAATGCTGTTGGTTTTATCGATCGCGTTATTTTGGGTGAACATCATCTTTATCAACACCCTGTTTACAGAAGAACAAAGGAATGCAGTATTAATTCTCCCGACTATGGACCGCTGCCACCTAATTCTCCTGGCTGGTGCCTTGCACCATTTGACCCAGAGGGAATCTTAAGCTCTCTGATGGCTGCTGTTACTTGTTTTGTGGGATTGCATTTTGGGCACATATTATTGCATTTTAAGGACCAAAACCAGAGGGTACTGTTATGGTGCATGTCTTCCTTTCCTATTCTAATCTTTGGTTTTGTTTTGGAGATGCTAGGTATTCCTTTCTGTAAACCACTGTACACACTGAGCTATGCATGCATTACAGCAGGAGCATCAGGCTTGATCTTAAGTATTATCTTCTACATAGTCGATGTCAAACATTGCAGAAAGCCCACAGTATTGTTGCAATGGATGGGGATGAATGCGCTCCTTATATATGCTTTTGCTGCTTGTGACCTTTTCTCAGTAGGATTGCAAGGTTTCTATTGGCAGTCCCCTGAAAACAACTTGGTTGATGGAGCTGAAGCATTACTGCAGGTGATAGTCCACTCAAAGAATTGGGGTACCCTAGCGTTTGTAATACTTGAGATTTTATTTTGGGGTCTTATTTCTGGCATTTTACACATGAAAGGCGTATATATAAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko04142 map00531 map01100 map04142

Pfam Domains

Protein Families

DUF1624

Protein Analysis

379

Amino Acids

42.74

Weight (kDa)

8.78

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005188)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640 FvH4_5g39640
malus_domestica	MD03G1297600.v1.1
prunus_persica	Prupe.8G269300_v2.0.a1 Prupe.8G269300_v2.0.a1
pyrus_communis	pycom03g23600
rosa_chinensis	RchiOBHm_Chr7g0241951
rosa_laevigata	RLG00000000527
rosa_multiflora	Rmu_sc0003266.1_g000010
rosa_roxburghii	Rroxscaffold_3G00218450
rosa_rugosa	Rorug07G0348900
rosa_samantha	Rh7AG503100 Rh7BG474400 Rh7CG520000 Rh7DG488700
rosa_wichuraiana	Rw7G042540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1015
Acc36I	ACCTGC	1 cut(s)	1015
Acc65I	GGTACC	1 cut(s)	1052
AccB1I	GGYRCC	2 cut(s)	582, 1052
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	2 cut(s)	370, 471
AciI	CCGC	2 cut(s)	368, 557
AcsI	RAATTY	1 cut(s)	376
AcuI	CTGAAG	1 cut(s)	1032
AfaI	GTAC	5 cut(s)	174, 400, 702, 788, 1054
AfiI	CCNNNNNNNGG	1 cut(s)	551
AflII	CTTAAG	2 cut(s)	613, 835
AgsI	TTSAA	2 cut(s)	210, 437
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	5 cut(s)	324, 365, 618, 798, 1010
AluI	AGCT	5 cut(s)	324, 365, 618, 798, 1010
Alw21I	GWGCWC	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	559, 629, 935
ApoI	RAATTY	1 cut(s)	376
AseI	ATTAAT	1 cut(s)	537
Asp718I	GGTACC	1 cut(s)	1052
AspLEI	GCGC	2 cut(s)	372, 916
AspS9I	GGNCC	2 cut(s)	554, 685
AsuHPI	GGTGA	2 cut(s)	494, 1039
AvaII	GGWCC	2 cut(s)	554, 685
BaeGI	GKGCMC	1 cut(s)	666
BanI	GGYRCC	2 cut(s)	582, 1052
BbsI	GAAGAC	2 cut(s)	425, 711
Bbv12I	GWGCWC	1 cut(s)	311
BbvI	GCAGC	3 cut(s)	546, 616, 922
BccI	CCATC	3 cut(s)	619, 895, 998
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	341
BfaI	CTAG	4 cut(s)	167, 267, 761, 1058
BfmI	CTRYAG	2 cut(s)	176, 1022
BfrI	CTTAAG	2 cut(s)	613, 835
BfuAI	ACCTGC	1 cut(s)	1015
BisI	GCNGC	3 cut(s)	560, 630, 936
BlsI	GCNGC	3 cut(s)	561, 631, 937
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	2 cut(s)	554, 685
BmgT120I	GGNCC	2 cut(s)	554, 685
BmiI	GGNNCC	2 cut(s)	584, 1054
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	747, 830
BpiI	GAAGAC	2 cut(s)	425, 711
BpuEI	CTTGAG	1 cut(s)	1094
Bsa29I	ATCGAT	2 cut(s)	188, 465
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	3 cut(s)	454, 868, 902
BseBI	CCWGG	1 cut(s)	576
BseCI	ATCGAT	2 cut(s)	188, 465
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	906, 912
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMI	GCAATG	3 cut(s)	454, 868, 902
BseMII	CTCAG	2 cut(s)	785, 966
BseNI	ACTGG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	666
BseXI	GCAGC	3 cut(s)	546, 616, 922
Bsh1236I	CGCG	2 cut(s)	370, 471
Bsh1285I	CGRYCG	1 cut(s)	469
BshNI	GGYRCC	2 cut(s)	582, 1052
BshVI	ATCGAT	2 cut(s)	188, 465
BsiEI	CGRYCG	1 cut(s)	469
BsiHKAI	GWGCWC	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	967
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	967
BsmI	GAATGC	2 cut(s)	533, 916
Bso31I	GGTCTC	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	311, 666
Bsp1407I	TGTACA	1 cut(s)	786
Bsp143I	GATC	2 cut(s)	466, 831
Bsp19I	CCATGG	1 cut(s)	115
BspACI	CCGC	2 cut(s)	368, 557
BspCNI	CTCAG	2 cut(s)	786, 965
BspDI	ATCGAT	2 cut(s)	188, 465
BspFNI	CGCG	2 cut(s)	370, 471
BspLI	GGNNCC	2 cut(s)	584, 1054
BspMAI	CTGCAG	1 cut(s)	1026
BspMI	ACCTGC	1 cut(s)	1015
BspT107I	GGYRCC	2 cut(s)	582, 1052
BspTI	CTTAAG	2 cut(s)	613, 835
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	3 cut(s)	454, 868, 902
BsrGI	TGTACA	1 cut(s)	786
BsrI	ACTGG	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	2 cut(s)	466, 831
BssT1I	CCWWGG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	4 cut(s)	705, 786, 886, 1137
Bst6I	CTCTTC	1 cut(s)	83
BstAFI	CTTAAG	2 cut(s)	613, 835
BstAUI	TGTACA	1 cut(s)	786
BstC8I	GCNNGC	2 cut(s)	326, 805
BstDEI	CTNAG	3 cut(s)	340, 794, 952
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	906, 912
BstFNI	CGCG	2 cut(s)	370, 471
BstHHI	GCGC	2 cut(s)	372, 916
BstKTI	GATC	2 cut(s)	469, 834
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	2 cut(s)	466, 831
BstMCI	CGRYCG	1 cut(s)	469
BstMWI	GCNNNNNNNGC	3 cut(s)	661, 804, 935
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	2 cut(s)	718, 807
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	176, 1022
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	2 cut(s)	370, 471
BstV1I	GCAGC	3 cut(s)	546, 616, 922
BstV2I	GAAGAC	2 cut(s)	425, 711
Bsu15I	ATCGAT	2 cut(s)	188, 465
BsuTUI	ATCGAT	2 cut(s)	188, 465
BtgI	CCRYGG	1 cut(s)	115
BtsCI	GGATG	2 cut(s)	906, 912
BtsIMutI	CAGTG	4 cut(s)	251, 290, 782, 791
BveI	ACCTGC	1 cut(s)	1015
Cac8I	GCNNGC	2 cut(s)	326, 805
CfoI	GCGC	2 cut(s)	372, 916
Cfr13I	GGNCC	2 cut(s)	554, 685
ClaI	ATCGAT	2 cut(s)	188, 465
Csp6I	GTAC	5 cut(s)	173, 399, 701, 787, 1053
CviAII	CATG	7 cut(s)	16, 58, 116, 373, 715, 804, 1114
CviQI	GTAC	5 cut(s)	173, 399, 701, 787, 1053
DdeI	CTNAG	3 cut(s)	340, 794, 952
DpnI	GATC	2 cut(s)	468, 833
DpnII	GATC	2 cut(s)	466, 831
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	341
Eco32I	GATATC	2 cut(s)	186, 197
Eco47I	GGWCC	2 cut(s)	554, 685
Eco57I	CTGAAG	1 cut(s)	1032
EcoRII	CCWGG	1 cut(s)	574
EcoRV	GATATC	2 cut(s)	186, 197
EcoT14I	CCWWGG	1 cut(s)	115
EcoT22I	ATGCAT	2 cut(s)	805, 809
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	7 cut(s)	19, 61, 119, 376, 718, 807, 1117
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	1 cut(s)	967
FatI	CATG	7 cut(s)	15, 57, 115, 372, 714, 803, 1113
FauNDI	CATATG	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	560, 630, 936
FokI	GGATG	2 cut(s)	913, 919
Fsp4HI	GCNGC	3 cut(s)	560, 630, 936
FspBI	CTAG	4 cut(s)	167, 267, 761, 1058
GlaI	GCGC	2 cut(s)	371, 915
GluI	GCNGC	3 cut(s)	560, 630, 936
HhaI	GCGC	2 cut(s)	372, 916
Hin1II	CATG	7 cut(s)	19, 61, 119, 376, 718, 807, 1117
Hin6I	GCGC	2 cut(s)	370, 914
HinP1I	GCGC	2 cut(s)	370, 914
HincII	GTYRAC	2 cut(s)	232, 247
HindII	GTYRAC	2 cut(s)	232, 247
HinfI	GANTC	3 cut(s)	157, 248, 609
HpaI	GTTAAC	1 cut(s)	232
HphI	GGTGA	2 cut(s)	494, 1039
Hpy166II	GTNNAC	9 cut(s)	125, 173, 232, 247, 485, 511, 779, 789, 1036
Hpy188I	TCNGA	3 cut(s)	152, 217, 624
Hpy188III	TCNNGA	1 cut(s)	545
Hpy8I	GTNNAC	9 cut(s)	125, 173, 232, 247, 485, 511, 779, 789, 1036
HpyCH4III	ACNGT	4 cut(s)	705, 786, 886, 1137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	661, 804, 935
HpyF3I	CTNAG	3 cut(s)	340, 794, 952
Hsp92II	CATG	7 cut(s)	19, 61, 119, 376, 718, 807, 1117
HspAI	GCGC	2 cut(s)	370, 914
KpnI	GGTACC	1 cut(s)	1056
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	466, 831
LmnI	GCTCC	4 cut(s)	370, 818, 921, 1007
Lsp1109I	GCAGC	3 cut(s)	546, 616, 922
LweI	GCATC	2 cut(s)	747, 830
MaeI	CTAG	4 cut(s)	167, 267, 761, 1058
MaeIII	GTNAC	4 cut(s)	10, 93, 634, 941
MalI	GATC	2 cut(s)	468, 833
MboI	GATC	2 cut(s)	466, 831
MboII	GAAGA	5 cut(s)	70, 425, 528, 711, 838
MhlI	GDGCHC	2 cut(s)	311, 666
MluCI	AATT	4 cut(s)	376, 538, 568, 1045
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	6 cut(s)	92, 174, 403, 450, 598, 690
Mph1103I	ATGCAT	2 cut(s)	805, 809
MseI	TTAA	6 cut(s)	131, 231, 537, 614, 681, 836
MspA1I	CMGCKG	1 cut(s)	559
MspCI	CTTAAG	2 cut(s)	613, 835
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	533, 916
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	2 cut(s)	370, 471
MwoI	GCNNNNNNNGC	3 cut(s)	661, 804, 935
NcoI	CCATGG	1 cut(s)	115
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	2 cut(s)	466, 831
NlaIII	CATG	7 cut(s)	19, 61, 119, 376, 718, 807, 1117
NlaIV	GGNNCC	2 cut(s)	584, 1054
NmuCI	GTSAC	1 cut(s)	941
NsiI	ATGCAT	2 cut(s)	805, 809
NspI	RCATGY	2 cut(s)	718, 807
PaeI	GCATGC	1 cut(s)	807
PaqCI	CACCTGC	1 cut(s)	1015
PctI	GAATGC	2 cut(s)	533, 916
PfeI	GAWTC	2 cut(s)	157, 609
PkrI	GCNGC	3 cut(s)	561, 631, 937
Ple19I	CGATCG	1 cut(s)	469
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PshBI	ATTAAT	1 cut(s)	537
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	584, 1054
PspPI	GGNCC	2 cut(s)	554, 685
PstI	CTGCAG	1 cut(s)	1026
PvuI	CGATCG	1 cut(s)	469
RsaI	GTAC	5 cut(s)	174, 400, 702, 788, 1054
RsaNI	GTAC	5 cut(s)	173, 399, 701, 787, 1053
SalI	GTCGAC	1 cut(s)	245
SaqAI	TTAA	6 cut(s)	131, 231, 537, 614, 681, 836
SatI	GCNGC	3 cut(s)	560, 630, 936
Sau3AI	GATC	2 cut(s)	466, 831
Sau96I	GGNCC	2 cut(s)	554, 685
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	2 cut(s)	311, 666
SfaNI	GCATC	2 cut(s)	747, 830
SfcI	CTRYAG	2 cut(s)	176, 1022
SinI	GGWCC	2 cut(s)	554, 685
SmlI	CTYRAG	3 cut(s)	613, 835, 1073
SmoI	CTYRAG	3 cut(s)	613, 835, 1073
SphI	GCATGC	1 cut(s)	807
Sse9I	AATT	4 cut(s)	376, 538, 568, 1045
SsiI	CCGC	2 cut(s)	368, 557
SspMI	CTAG	4 cut(s)	167, 267, 761, 1058
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	705, 786, 886, 1137
TaqI	TCGA	4 cut(s)	188, 246, 465, 858
TasI	AATT	4 cut(s)	376, 538, 568, 1045
TatI	WGTACW	2 cut(s)	172, 786
TfiI	GAWTC	2 cut(s)	157, 609
Tru1I	TTAA	6 cut(s)	131, 231, 537, 614, 681, 836
Tru9I	TTAA	6 cut(s)	131, 231, 537, 614, 681, 836
TscAI	CASTG	4 cut(s)	258, 290, 789, 798
TseFI	GTSAC	1 cut(s)	941
TseI	GCWGC	3 cut(s)	559, 629, 935
Tsp45I	GTSAC	1 cut(s)	941
TspDTI	ATGAA	4 cut(s)	375, 389, 923, 1130
TspRI	CASTG	4 cut(s)	258, 290, 789, 798
Vha464I	CTTAAG	2 cut(s)	613, 835
VpaK11BI	GGWCC	2 cut(s)	554, 685
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	2 cut(s)	718, 807
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	4 cut(s)	167, 267, 761, 1058
Zsp2I	ATGCAT	2 cut(s)	805, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.