pycom03g23600

Heparan-alpha-glucosaminide N-acetyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0005188
Physical Location & Seq
Reverse (-)
23392055 .. 23395560
3506 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g23600.12

Sequence Viewer

Length: 1233 bp
ATGTCTGCAGCCGTCGACGACGTTGCTCCTCTTCTTCATCTCTACAGAGACACAGACAGAGACGGAGAATCATCCATTTCTAATGAGATCCCAAGTCTTGTGCCCGCCTCACCATCCAACGGCACACATGCATCGACGCCTAATCAACGCCTGGCCTCTCTCGACGTCTTCCGTGGCCTCACCGTCGCGTTGATGATTTTGGTCGATGATGCCGGAGGAGCTTTCCCGTCGATAAACCACTCTCCGTGGTTGGGCGTTACACTTGCAGATTTTGTAATGCCATTTTTTCTTTTTCTTGTTGGCGTCTCCATCAGTCTTGCATTCAAGAAAATACCCAACAAGACAACTGCCACAAAGAAAGTCATTCTTAGAGCAATGAATCTCTTTCTCTTGGGGTTGTTACTGCAAGGTGGGTATTTCCATGGGCGTGACCATTTAACATATGGGGTTGATGTGGGCAAGATACGTTGGCTAGGTGTACTACAGAGGATTTCAATTGGATATTTGCTGGCTTCAATCTCAGAGATCTGGTTTGTTAACAATATCATGGTTGAATCACTGGTCGATTTTGCTAGGAAATACTACAATCAGTGCTGCAAGCTTGAATTTGTCTCGTTCTGGACCTGTGTTAATTCTCCTGACTATGGACCTCTGCCCTCTGATTCTCCTCAATGGTGCCTTGCACCATTTGACCCAGAGGGAATCTTAAGTTCTCTGATGGCTGCCGTTACATGTTTTGTGGGATTGCATTTTGGGCACATACTATTGCATTTCAAGGACCAGAAGCAGAGGATATTGTTATGGTCTATGTCCTCCTTTCCTCTTTTAATATTTGGATATGCTTTGAAGATGCTTGGTATTCCTTTCTGTAAACCACTATACACAATGAGCTATACATGTATTACAGCAGGAGCATCAGGCTTGATGTTATGCATTATCTTCTACATAGTTGATGTCAAACATTTCATAAAGGCGACAGTGTTGCTGCAATGGATGGGGATGAATGCGCTCATTATATATGCTTTGGGTGCTTGTGACCTCTTCTCAGCAGGTTTGCAAGGTTTCTATTGGCGGTCACCAGAGAATAACTTGGTTGATGGGACAGAGGCATTATTGCAGGACATGCTTCGATCGAAGAACTGGGGTACCCTAGCATTTGTAATACTTGAGATTTTATTTTGGGGTCTTGTTTCTGGGTTTCTTCACATGAAAGGCGTGTATATAAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko04142 map00531 map01100 map04142
Pfam Domains
Protein Families
DUF1624

Protein Analysis

411

Amino Acids

45.57

Weight (kDa)

7.11

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 1040
Acc65I GGTACC 1 cut(s) 1145
AccB1I GGYRCC 2 cut(s) 675, 1145
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 188
AciI CCGC 2 cut(s) 105, 1072
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 605
AcyI GRCGYC 3 cut(s) 137, 165, 303
AfaI GTAC 2 cut(s) 480, 1147
AfiI CCNNNNNNNGG 3 cut(s) 119, 251, 644
AflII CTTAAG 1 cut(s) 706
AflIII ACRYGT 2 cut(s) 731, 896
AgsI TTSAA 7 cut(s) 325, 495, 516, 554, 605, 775, 847
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 3 cut(s) 221, 601, 891
AluI AGCT 3 cut(s) 221, 601, 891
Alw26I GTCTC 4 cut(s) 42, 54, 310, 616
AlwI GGATC 1 cut(s) 82
AoxI GGCC 2 cut(s) 153, 175
ApeKI GCWGC 4 cut(s) 8, 594, 722, 985
ApoI RAATTY 1 cut(s) 605
Asp718I GGTACC 1 cut(s) 1145
AspLEI GCGC 1 cut(s) 1009
AspS9I GGNCC 3 cut(s) 621, 647, 778
AsuHPI GGTGA 3 cut(s) 102, 172, 1068
AvaII GGWCC 3 cut(s) 621, 647, 778
BaeGI GKGCMC 2 cut(s) 105, 759
BaeI ACNNNNGTAYC 2 cut(s) 1129, 1162
BanI GGYRCC 2 cut(s) 675, 1145
BbsI GAAGAC 1 cut(s) 160
BbvI GCAGC 4 cut(s) 20, 581, 709, 972
BccI CCATC 5 cut(s) 121, 317, 712, 988, 1091
BceAI ACGGC 2 cut(s) 136, 710
BcgI CGANNNNNNTGC 4 cut(s) 5, 39, 964, 998
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 4 cut(s) 42, 54, 310, 616
BfaI CTAG 3 cut(s) 473, 573, 1151
BfmI CTRYAG 3 cut(s) 6, 43, 482
BfrI CTTAAG 1 cut(s) 706
BfuAI ACCTGC 1 cut(s) 1040
BglII AGATCT 1 cut(s) 525
BisI GCNGC 4 cut(s) 9, 595, 723, 986
BlsI GCNGC 4 cut(s) 10, 596, 724, 987
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 3 cut(s) 621, 647, 778
BmgT120I GGNCC 3 cut(s) 621, 647, 778
BmiI GGNNCC 2 cut(s) 677, 1147
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 1150
BmsI GCATC 4 cut(s) 140, 199, 840, 923
BmuI ACTGGG 1 cut(s) 1150
BpiI GAAGAC 1 cut(s) 160
BpuEI CTTGAG 1 cut(s) 1187
BsaHI GRCGYC 3 cut(s) 137, 165, 303
BsaJI CCNNGG 3 cut(s) 172, 245, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 251, 644
Bse1I ACTGG 2 cut(s) 564, 1145
Bse3DI GCAATG 2 cut(s) 381, 995
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 172, 245, 421
BseGI GGATG 4 cut(s) 71, 113, 999, 1005
BseLI CCNNNNNNNGG 3 cut(s) 119, 251, 644
BseMI GCAATG 2 cut(s) 381, 995
BseMII CTCAG 2 cut(s) 534, 1059
BseNI ACTGG 2 cut(s) 564, 1145
BseRI GAGGAG 3 cut(s) 18, 231, 657
BseSI GKGCMC 2 cut(s) 105, 759
BseXI GCAGC 4 cut(s) 20, 581, 709, 972
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 1133
BshFI GGCC 2 cut(s) 155, 177
BshNI GGYRCC 2 cut(s) 675, 1145
BsiEI CGRYCG 1 cut(s) 1133
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 1114
BslI CCNNNNNNNGG 3 cut(s) 119, 251, 644
BsmAI GTCTC 4 cut(s) 42, 54, 310, 616
BsmBI CGTCTC 2 cut(s) 54, 310
BsmFI GGGAC 1 cut(s) 1114
BsmI GAATGC 2 cut(s) 320, 1009
BsnI GGCC 2 cut(s) 155, 177
Bsp1286I GDGCHC 2 cut(s) 105, 759
Bsp143I GATC 3 cut(s) 87, 525, 1130
Bsp19I CCATGG 1 cut(s) 421
BspACI CCGC 2 cut(s) 105, 1072
BspANI GGCC 2 cut(s) 155, 177
BspCNI CTCAG 2 cut(s) 533, 1058
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 677, 1147
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 1040
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 2 cut(s) 675, 1145
BspTI CTTAAG 1 cut(s) 706
BsrDI GCAATG 2 cut(s) 381, 995
BsrI ACTGG 2 cut(s) 564, 1145
BssECI CCNNGG 3 cut(s) 172, 245, 421
BssMI GATC 3 cut(s) 87, 525, 1130
BssNI GRCGYC 3 cut(s) 137, 165, 303
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 3 cut(s) 184, 979, 1230
Bst6I CTCTTC 2 cut(s) 36, 1046
BstACI GRCGYC 3 cut(s) 137, 165, 303
BstAFI CTTAAG 1 cut(s) 706
BstAPI GCANNNNNTGC 1 cut(s) 1123
BstC8I GCNNGC 3 cut(s) 105, 510, 599
BstDEI CTNAG 3 cut(s) 368, 520, 1045
BstDSI CCRYGG 3 cut(s) 172, 245, 421
BstEII GGTNACC 1 cut(s) 1074
BstF5I GGATG 4 cut(s) 71, 113, 999, 1005
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 3 cut(s) 90, 528, 1133
BstMAI GTCTC 4 cut(s) 42, 54, 310, 616
BstMBI GATC 3 cut(s) 87, 525, 1130
BstMCI CGRYCG 1 cut(s) 1133
BstMWI GCNNNNNNNGC 4 cut(s) 218, 754, 1028, 1123
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 4 cut(s) 131, 735, 900, 1126
BstPI GGTNACC 1 cut(s) 1074
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 3 cut(s) 6, 43, 482
BstSLI GKGCMC 2 cut(s) 105, 759
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 4 cut(s) 20, 581, 709, 972
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 2 cut(s) 87, 525
BstYI RGATCY 2 cut(s) 87, 525
BsuRI GGCC 2 cut(s) 155, 177
BtgI CCRYGG 3 cut(s) 172, 245, 421
BtsCI GGATG 4 cut(s) 71, 113, 999, 1005
BtsIMutI CAGTG 3 cut(s) 557, 596, 984
BveI ACCTGC 1 cut(s) 1040
Cac8I GCNNGC 3 cut(s) 105, 510, 599
CfoI GCGC 1 cut(s) 1009
Cfr13I GGNCC 3 cut(s) 621, 647, 778
CseI GACGC 2 cut(s) 145, 292
Csp6I GTAC 2 cut(s) 479, 1146
CviAII CATG 7 cut(s) 128, 422, 547, 732, 897, 1123, 1207
CviQI GTAC 2 cut(s) 479, 1146
DdeI CTNAG 3 cut(s) 368, 520, 1045
DpnI GATC 3 cut(s) 89, 527, 1132
DpnII GATC 3 cut(s) 87, 525, 1130
Eam1104I CTCTTC 2 cut(s) 36, 1046
EarI CTCTTC 2 cut(s) 36, 1046
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 3 cut(s) 621, 647, 778
Eco91I GGTNACC 1 cut(s) 1074
EcoO65I GGTNACC 1 cut(s) 1074
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 421
EcoT22I ATGCAT 2 cut(s) 133, 935
ErhI CCWWGG 1 cut(s) 421
Esp3I CGTCTC 2 cut(s) 54, 310
FaeI CATG 7 cut(s) 131, 425, 550, 735, 900, 1126, 1210
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 1 cut(s) 1114
FatI CATG 7 cut(s) 127, 421, 546, 731, 896, 1122, 1206
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 442
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 4 cut(s) 9, 595, 723, 986
FokI GGATG 4 cut(s) 58, 100, 1006, 1012
Fsp4HI GCNGC 4 cut(s) 9, 595, 723, 986
FspBI CTAG 3 cut(s) 473, 573, 1151
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 4 cut(s) 9, 595, 723, 986
HaeIII GGCC 2 cut(s) 155, 177
HapII CCGG 1 cut(s) 213
HgaI GACGC 2 cut(s) 145, 292
HhaI GCGC 1 cut(s) 1009
Hin1I GRCGYC 3 cut(s) 137, 165, 303
Hin1II CATG 7 cut(s) 131, 425, 550, 735, 900, 1126, 1210
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HincII GTYRAC 2 cut(s) 16, 538
HindII GTYRAC 2 cut(s) 16, 538
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 5 cut(s) 68, 379, 554, 662, 702
HpaI GTTAAC 1 cut(s) 538
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 102, 172, 1068
Hpy166II GTNNAC 4 cut(s) 16, 479, 538, 872
Hpy188I TCNGA 3 cut(s) 523, 661, 717
Hpy188III TCNNGA 4 cut(s) 161, 325, 619, 638
Hpy8I GTNNAC 4 cut(s) 16, 479, 538, 872
Hpy99I CGWCG 7 cut(s) 17, 20, 23, 139, 167, 188, 232
HpyCH4III ACNGT 3 cut(s) 184, 979, 1230
HpyCH4IV ACGT 3 cut(s) 21, 165, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 754, 1028, 1123
HpyF3I CTNAG 3 cut(s) 368, 520, 1045
HpySE526I ACGT 3 cut(s) 21, 165, 466
Hsp92I GRCGYC 3 cut(s) 137, 165, 303
Hsp92II CATG 7 cut(s) 131, 425, 550, 735, 900, 1126, 1210
HspAI GCGC 1 cut(s) 1007
KpnI GGTACC 1 cut(s) 1149
KspAI GTTAAC 1 cut(s) 538
Kzo9I GATC 3 cut(s) 87, 525, 1130
LmnI GCTCC 3 cut(s) 31, 218, 911
Lsp1109I GCAGC 4 cut(s) 20, 581, 709, 972
LweI GCATC 4 cut(s) 140, 199, 840, 923
MaeI CTAG 3 cut(s) 473, 573, 1151
MaeII ACGT 3 cut(s) 21, 165, 466
MaeIII GTNAC 6 cut(s) 256, 399, 428, 727, 1034, 1074
MalI GATC 3 cut(s) 89, 527, 1132
MboI GATC 3 cut(s) 87, 525, 1130
MboII GAAGA 8 cut(s) 23, 26, 160, 859, 931, 1033, 1147, 1193
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 2 cut(s) 87, 525
MhlI GDGCHC 2 cut(s) 105, 759
MluCI AATT 3 cut(s) 495, 605, 631
MmeI TCCRAC 1 cut(s) 141
Mph1103I ATGCAT 2 cut(s) 133, 935
MseI TTAA 5 cut(s) 437, 537, 630, 707, 827
MslI CAYNNNNRTG 1 cut(s) 426
MspCI CTTAAG 1 cut(s) 706
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 2 cut(s) 320, 1009
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 218, 754, 1028, 1123
NcoI CCATGG 1 cut(s) 421
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 87, 525, 1130
NlaIII CATG 7 cut(s) 131, 425, 550, 735, 900, 1126, 1210
NlaIV GGNNCC 2 cut(s) 677, 1147
NmuCI GTSAC 3 cut(s) 428, 1034, 1074
NsiI ATGCAT 2 cut(s) 133, 935
NspI RCATGY 4 cut(s) 131, 735, 900, 1126
PciI ACATGT 2 cut(s) 731, 896
PctI GAATGC 2 cut(s) 320, 1009
PfeI GAWTC 5 cut(s) 68, 379, 554, 662, 702
PkrI GCNGC 4 cut(s) 10, 596, 724, 987
Ple19I CGATCG 1 cut(s) 1133
PscI ACATGT 2 cut(s) 731, 896
Psp6I CCWGG 1 cut(s) 150
PspEI GGTNACC 1 cut(s) 1074
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 677, 1147
PspPI GGNCC 3 cut(s) 621, 647, 778
PstI CTGCAG 1 cut(s) 10
PsuI RGATCY 2 cut(s) 87, 525
PvuI CGATCG 1 cut(s) 1133
RsaI GTAC 2 cut(s) 480, 1147
RsaNI GTAC 2 cut(s) 479, 1146
RseI CAYNNNNRTG 1 cut(s) 426
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 5 cut(s) 437, 537, 630, 707, 827
SatI GCNGC 4 cut(s) 9, 595, 723, 986
Sau3AI GATC 3 cut(s) 87, 525, 1130
Sau96I GGNCC 3 cut(s) 621, 647, 778
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 2 cut(s) 105, 759
SfaNI GCATC 4 cut(s) 140, 199, 840, 923
SfcI CTRYAG 3 cut(s) 6, 43, 482
SgrDI CGTCGACG 1 cut(s) 14
SinI GGWCC 3 cut(s) 621, 647, 778
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 706, 1166
SmoI CTYRAG 2 cut(s) 706, 1166
Sse9I AATT 3 cut(s) 495, 605, 631
SsiI CCGC 2 cut(s) 105, 1072
SspI AATATT 1 cut(s) 831
SspMI CTAG 3 cut(s) 473, 573, 1151
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 3 cut(s) 184, 979, 1230
TaiI ACGT 3 cut(s) 24, 168, 469
TaqI TCGA 8 cut(s) 15, 134, 162, 204, 230, 564, 1129, 1133
TasI AATT 3 cut(s) 495, 605, 631
TatI WGTACW 1 cut(s) 478
TfiI GAWTC 5 cut(s) 68, 379, 554, 662, 702
Tru1I TTAA 5 cut(s) 437, 537, 630, 707, 827
Tru9I TTAA 5 cut(s) 437, 537, 630, 707, 827
TscAI CASTG 3 cut(s) 564, 596, 984
TseFI GTSAC 3 cut(s) 428, 1034, 1074
TseI GCWGC 4 cut(s) 8, 594, 722, 985
Tsp45I GTSAC 3 cut(s) 428, 1034, 1074
TspDTI ATGAA 5 cut(s) 26, 392, 955, 1016, 1223
TspGWI ACGGA 3 cut(s) 78, 161, 234
TspRI CASTG 3 cut(s) 564, 596, 984
Vha464I CTTAAG 1 cut(s) 706
VpaK11BI GGWCC 3 cut(s) 621, 647, 778
XapI RAATTY 1 cut(s) 605
XceI RCATGY 4 cut(s) 131, 735, 900, 1126
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 3 cut(s) 473, 573, 1151
ZraI GACGTC 1 cut(s) 166
Zsp2I ATGCAT 2 cut(s) 133, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.