FvH4_5g39660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016355
Physical Location & Seq
Forward (+)
29255413 .. 29257475
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39660.t1

Sequence Viewer

Length: 1293 bp
ATGAAGAACCATATGCATGTATGTAACTCGAGTAGTGACGATGAGAAGATAATAATTAGTGATGAGTCGTCCGGGTCAATTTCGTCAATAGAGGCATACTGCTGGTGGAGATCGGCGGCAAAGTACGACGAGTATGTTAAGCTCAAGTTTGAGGGCGGCCTGCCAGATGTGTCAAGGCTGACAAGGAGGATGAGAGTGTTCAAAGAGTTGGAGAGATTGGCTCTGCTTGCTAGTGGCAATACTACTGGTACTCATGAATATCAAGGTCAATACATTGAAGGTGGTGTGAATGAGCTCCGGCACAAGCTCCTCACGTATCGATCAGGTGATTTCTGGGTGCCTACTGGAGGAATTAGTAAGGACATGATGGACATTCCACCAGTGGCCACAATTCTCTTGGTCGGCTTTTCTGCTTCCGGCAAGAGCTCGCTTGTCAATCTAATGTATAGTGTTTTGGGTCGCTCTGGACTTGTACCTTTTGCTCAAACATCCTCATCCTCAGGAAGTACAACTATGCTTTTGAAAGAGCACAATGTGGTGAGGTCTTTGCGTAGTGGGTTCTGTGTGTACGACTCACGGGGATTCGATTACAATGACATTGGTGATGATAGTGTTCGGGAAGAACTGTCATGTTGGATGAATTATGGGATTCACCAGAACCAAAGATGCTTAAGATCAGGAGATCCGGACAACATCCCTCATCATAATGTTGCAGGTGATGATATGCATGATGAATTTCATACCATGTCCGAATATAATTGGTCTTCAAAGTTCGTGAGGAGGACAGTGAACTGTGTCATGCTGGTGGCTAACATGGCAGAGATATACAAGGCGTTTAAAGCTGGTGATTCTAATCTAATCGAAGCCACAAGACAGCTTTTCTGCTCAAGTGCTTTCCGAAATTGCGATGATGAGAAGCCCATCTTGATCTTGACACATGGTGACATGTTATCAACTGAAGAGAGGATTGAAGGGCGGCTTAAAATATGTGAATATGTGGGTGTCTCAGAGACGACCGGAGTATATGATATCGTGTGCCTTACGGAGTATGGATTTCTGGCAGAAGAATCAGACCCGGTTTCAGCTTATGCCCTCACAGAAGCAGTGTATAGGGCATTGCTCATATCGGACAGGACCCACTTACCGAAGAAAACACATAAGGACTGGGCATTGCTTGTAGTGTCCTGGATTATGTGCTTCATTGCTTCCCTCTTTGCTCTCATTGCTGAGATTTGCTTCAAACTCGGAGGAGGTGGACGTCAGAGGGATCACCACAGGCTACTCATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

431

Amino Acids

48.37

Weight (kDa)

5.94

Isoelectric Point (pI)

49.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016355)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39660 FvH4_5g39660
malus_domestica MD03G1298300.v1.1
prunus_persica Prupe.8G269000_v2.0.a1
pyrus_communis pycom03g23620
rosa_chinensis RchiOBHm_Chr7g0241971
rosa_laevigata RLG00000000525
rosa_multiflora Rmu_sc0003266.1_g000005
rosa_roxburghii Rroxscaffold_3G00218420
rosa_rugosa Rorug07G0349400
rosa_samantha Rh7AG503400 Rh7BG474600 Rh7CG520200 Rh7DG489000
rosa_wichuraiana Rw7G042570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 704
AatII GACGTC 1 cut(s) 1261
Acc36I ACCTGC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 337
AccIII TCCGGA 1 cut(s) 685
AciI CCGC 3 cut(s) 116, 156, 976
AclWI GGATC 2 cut(s) 677, 1275
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 1 cut(s) 734
AcuI CTGAAG 1 cut(s) 978
AcyI GRCGYC 1 cut(s) 1258
AdeI CACNNNGTG 2 cut(s) 535, 941
AfaI GTAC 5 cut(s) 125, 250, 474, 508, 569
AfiI CCNNNNNNNGG 1 cut(s) 347
AflII CTTAAG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 945
AgsI TTSAA 6 cut(s) 202, 278, 523, 768, 971, 1240
AjnI CCWGG 1 cut(s) 1184
AluBI AGCT 7 cut(s) 142, 295, 307, 426, 842, 877, 1085
AluI AGCT 7 cut(s) 142, 295, 307, 426, 842, 877, 1085
Alw21I GWGCWC 3 cut(s) 297, 428, 531
Alw26I GTCTC 2 cut(s) 1004, 1009
AlwI GGATC 2 cut(s) 677, 1275
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 685
AoxI GGCC 2 cut(s) 157, 384
ApoI RAATTY 1 cut(s) 734
AspS9I GGNCC 1 cut(s) 1134
AsuC2I CCSGG 2 cut(s) 73, 1076
AsuHPI GGTGA 8 cut(s) 338, 550, 614, 644, 728, 857, 953, 1262
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 1 cut(s) 1134
AxyI CCTNAGG 1 cut(s) 499
BalI TGGCCA 1 cut(s) 386
BanI GGYRCC 1 cut(s) 337
BanII GRGCYC 2 cut(s) 297, 428
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 3 cut(s) 297, 428, 531
BccI CCATC 2 cut(s) 361, 929
BciT130I CCWGG 1 cut(s) 1186
BcnI CCSGG 2 cut(s) 73, 1076
BcoDI GTCTC 2 cut(s) 1004, 1009
BfaI CTAG 1 cut(s) 231
BfrI CTTAAG 1 cut(s) 670
BfuAI ACCTGC 1 cut(s) 704
BisI GCNGC 3 cut(s) 117, 157, 977
BlsI GCNGC 3 cut(s) 118, 158, 978
Bme1390I CCNGG 3 cut(s) 73, 1076, 1186
Bme18I GGWCC 1 cut(s) 1134
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 1134
BmiI GGNNCC 2 cut(s) 339, 1136
BmrFI CCNGG 3 cut(s) 73, 1076, 1186
BmrI ACTGGG 1 cut(s) 1174
BmsI GCATC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 1174
BpiI GAAGAC 1 cut(s) 756
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 128, 871
BpuMI CCSGG 2 cut(s) 73, 1076
Bsa29I ATCGAT 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 1258
BsaWI WCCGGW 2 cut(s) 685, 1016
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 4 cut(s) 250, 349, 380, 1169
Bse21I CCTNAGG 1 cut(s) 499
Bse3DI GCAATG 4 cut(s) 1115, 1169, 1200, 1221
Bse8I GATNNNNATC 1 cut(s) 852
BseAI TCCGGA 1 cut(s) 685
BseBI CCWGG 1 cut(s) 1186
BseCI ATCGAT 1 cut(s) 319
BseGI GGATG 5 cut(s) 195, 488, 494, 642, 693
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 4 cut(s) 1115, 1169, 1200, 1221
BseMII CTCAG 3 cut(s) 513, 1020, 1218
BseNI ACTGG 4 cut(s) 250, 349, 380, 1169
BseRI GAGGAG 3 cut(s) 299, 793, 1263
Bsh1285I CGRYCG 1 cut(s) 1017
BshFI GGCC 2 cut(s) 159, 386
BshNI GGYRCC 1 cut(s) 337
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 1017
BsiHKAI GWGCWC 3 cut(s) 297, 428, 531
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 6 cut(s) 72, 298, 417, 686, 1017, 1076
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 2 cut(s) 1004, 1009
BsmBI CGTCTC 1 cut(s) 1004
BsnI GGCC 2 cut(s) 159, 386
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 3 cut(s) 297, 428, 531
Bsp13I TCCGGA 1 cut(s) 685
Bsp143I GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
BspACI CCGC 3 cut(s) 116, 156, 976
BspANI GGCC 2 cut(s) 159, 386
BspCNI CTCAG 3 cut(s) 512, 1019, 1219
BspDI ATCGAT 1 cut(s) 319
BspEI TCCGGA 1 cut(s) 685
BspHI TCATGA 2 cut(s) 253, 1284
BspLI GGNNCC 2 cut(s) 339, 1136
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 2 cut(s) 677, 1275
BspT107I GGYRCC 1 cut(s) 337
BspTI CTTAAG 1 cut(s) 670
BsrDI GCAATG 4 cut(s) 1115, 1169, 1200, 1221
BsrI ACTGG 4 cut(s) 250, 349, 380, 1169
BssMI GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
BssNI GRCGYC 1 cut(s) 1258
Bst2UI CCWGG 1 cut(s) 1186
Bst4CI ACNGT 3 cut(s) 627, 787, 794
Bst6I CTCTTC 1 cut(s) 954
BstACI GRCGYC 1 cut(s) 1258
BstAFI CTTAAG 1 cut(s) 670
BstBAI YACGTR 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 161, 228, 428
BstDEI CTNAG 3 cut(s) 499, 1006, 1227
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 5 cut(s) 195, 488, 494, 642, 693
BstKTI GATC 6 cut(s) 113, 323, 677, 685, 930, 1270
BstMAI GTCTC 2 cut(s) 1004, 1009
BstMBI GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
BstMCI CGRYCG 1 cut(s) 1017
BstMWI GCNNNNNNNGC 4 cut(s) 227, 815, 839, 1223
BstNI CCWGG 1 cut(s) 1186
BstNSI RCATGY 2 cut(s) 20, 949
BstSCI CCNGG 3 cut(s) 71, 1074, 1184
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
Bsu15I ATCGAT 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 499
BsuRI GGCC 2 cut(s) 159, 386
BsuTUI ATCGAT 1 cut(s) 319
BtgZI GCGATG 1 cut(s) 921
BtsCI GGATG 5 cut(s) 195, 488, 494, 642, 693
BtsI GCAGTG 1 cut(s) 1110
BtsIMutI CAGTG 3 cut(s) 387, 792, 1110
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 3 cut(s) 161, 228, 428
CciI TCATGA 2 cut(s) 253, 1284
Cfr13I GGNCC 1 cut(s) 1134
ClaI ATCGAT 1 cut(s) 319
Csp6I GTAC 5 cut(s) 124, 249, 473, 507, 568
CviQI GTAC 5 cut(s) 124, 249, 473, 507, 568
DdeI CTNAG 3 cut(s) 499, 1006, 1227
DpnI GATC 6 cut(s) 112, 322, 676, 684, 929, 1269
DpnII GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
DraI TTTAAA 1 cut(s) 838
DraIII CACNNNGTG 2 cut(s) 535, 941
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Ecl136II GAGCTC 2 cut(s) 295, 426
Eco24I GRGCYC 2 cut(s) 297, 428
Eco32I GATATC 1 cut(s) 1030
Eco47I GGWCC 1 cut(s) 1134
Eco53kI GAGCTC 2 cut(s) 295, 426
Eco57I CTGAAG 1 cut(s) 978
Eco81I CCTNAGG 1 cut(s) 499
Eco88I CYCGRG 1 cut(s) 28
EcoICRI GAGCTC 2 cut(s) 295, 426
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 1134
EcoRII CCWGG 1 cut(s) 1184
EcoRV GATATC 1 cut(s) 1030
EcoT22I ATGCAT 2 cut(s) 18, 729
EcoT38I GRGCYC 2 cut(s) 297, 428
Esp3I CGTCTC 1 cut(s) 1004
FalI AAGNNNNNCTT 4 cut(s) 908, 940, 963, 995
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 117, 157, 977
FokI GGATG 5 cut(s) 202, 475, 481, 649, 680
FriOI GRGCYC 2 cut(s) 297, 428
Fsp4HI GCNGC 3 cut(s) 117, 157, 977
FspBI CTAG 1 cut(s) 231
GluI GCNGC 3 cut(s) 117, 157, 977
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 2 cut(s) 159, 386
HapII CCGG 6 cut(s) 72, 298, 417, 686, 1017, 1076
Hin1I GRCGYC 1 cut(s) 1258
HinfI GANTC 6 cut(s) 65, 572, 582, 649, 848, 1067
HpaII CCGG 6 cut(s) 72, 298, 417, 686, 1017, 1076
HphI GGTGA 8 cut(s) 338, 550, 614, 644, 728, 857, 953, 1262
Hpy166II GTNNAC 3 cut(s) 568, 790, 1256
Hpy188I TCNGA 7 cut(s) 751, 899, 1009, 1072, 1129, 1247, 1263
Hpy8I GTNNAC 3 cut(s) 568, 790, 1256
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 2 cut(s) 272, 965
HpyCH4III ACNGT 3 cut(s) 627, 787, 794
HpyCH4IV ACGT 2 cut(s) 314, 1258
HpyCH4V TGCA 3 cut(s) 16, 713, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 815, 839, 1223
HpyF3I CTNAG 3 cut(s) 499, 1006, 1227
HpySE526I ACGT 2 cut(s) 314, 1258
Hsp92I GRCGYC 1 cut(s) 1258
Kpn2I TCCGGA 1 cut(s) 685
Kzo9I GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
LmnI GCTCC 2 cut(s) 300, 312
LweI GCATC 1 cut(s) 656
MaeI CTAG 1 cut(s) 231
MaeII ACGT 2 cut(s) 314, 1258
MaeIII GTNAC 3 cut(s) 23, 35, 941
MalI GATC 6 cut(s) 112, 322, 676, 684, 929, 1269
MboI GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
MboII GAAGA 7 cut(s) 16, 58, 632, 756, 971, 1076, 1159
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 3 cut(s) 297, 428, 531
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 8 cut(s) 54, 78, 351, 390, 640, 734, 757, 901
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 2 cut(s) 74, 566
MmeI TCCRAC 2 cut(s) 189, 614
Mox20I TGGCCA 1 cut(s) 386
Mph1103I ATGCAT 2 cut(s) 18, 729
MroI TCCGGA 1 cut(s) 685
MscI TGGCCA 1 cut(s) 386
MseI TTAA 4 cut(s) 138, 671, 837, 981
MslI CAYNNNNRTG 3 cut(s) 15, 705, 803
Msp20I TGGCCA 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 6 cut(s) 72, 298, 417, 686, 1017, 1076
MspR9I CCNGG 3 cut(s) 73, 1076, 1186
MvaI CCWGG 1 cut(s) 1186
MwoI GCNNNNNNNGC 4 cut(s) 227, 815, 839, 1223
NciI CCSGG 2 cut(s) 73, 1076
NdeI CATATG 1 cut(s) 12
NdeII GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
NlaIV GGNNCC 2 cut(s) 339, 1136
NmuCI GTSAC 2 cut(s) 35, 941
NsiI ATGCAT 2 cut(s) 18, 729
NspI RCATGY 2 cut(s) 20, 949
PaeR7I CTCGAG 1 cut(s) 28
PagI TCATGA 2 cut(s) 253, 1284
PaqCI CACCTGC 1 cut(s) 704
PciI ACATGT 1 cut(s) 945
PfeI GAWTC 4 cut(s) 582, 649, 848, 1067
PfoI TCCNGGA 1 cut(s) 1184
PkrI GCNGC 3 cut(s) 118, 158, 978
PleI GAGTC 2 cut(s) 73, 566
PpsI GAGTC 2 cut(s) 73, 566
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 1134
PscI ACATGT 1 cut(s) 945
Psp124BI GAGCTC 2 cut(s) 297, 428
Psp5II RGGWCCY 1 cut(s) 1134
Psp6I CCWGG 1 cut(s) 1184
PspGI CCWGG 1 cut(s) 1184
PspN4I GGNNCC 2 cut(s) 339, 1136
PspPI GGNCC 1 cut(s) 1134
PspPPI RGGWCCY 1 cut(s) 1134
PspXI VCTCGAGB 1 cut(s) 28
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 5 cut(s) 125, 250, 474, 508, 569
RsaNI GTAC 5 cut(s) 124, 249, 473, 507, 568
RseI CAYNNNNRTG 3 cut(s) 15, 705, 803
SacI GAGCTC 2 cut(s) 297, 428
SaqAI TTAA 4 cut(s) 138, 671, 837, 981
SatI GCNGC 3 cut(s) 117, 157, 977
Sau3AI GATC 6 cut(s) 110, 320, 674, 682, 927, 1267
Sau96I GGNCC 1 cut(s) 1134
SchI GAGTC 2 cut(s) 74, 566
ScrFI CCNGG 3 cut(s) 73, 1076, 1186
SduI GDGCHC 3 cut(s) 297, 428, 531
SfaNI GCATC 1 cut(s) 656
Sfr274I CTCGAG 1 cut(s) 28
SinI GGWCC 1 cut(s) 1134
SlaI CTCGAG 1 cut(s) 28
SmiMI CAYNNNNRTG 3 cut(s) 15, 705, 803
SmlI CTYRAG 4 cut(s) 28, 143, 670, 886
SmoI CTYRAG 4 cut(s) 28, 143, 670, 886
Sse9I AATT 8 cut(s) 54, 78, 351, 390, 640, 734, 757, 901
SsiI CCGC 3 cut(s) 116, 156, 976
SspMI CTAG 1 cut(s) 231
SstI GAGCTC 2 cut(s) 297, 428
StyD4I CCNGG 3 cut(s) 71, 1074, 1184
TaaI ACNGT 3 cut(s) 627, 787, 794
TaiI ACGT 2 cut(s) 317, 1261
TaqI TCGA 4 cut(s) 29, 319, 585, 861
TasI AATT 8 cut(s) 54, 78, 351, 390, 640, 734, 757, 901
TatI WGTACW 1 cut(s) 506
TauI GCSGC 3 cut(s) 119, 159, 979
TfiI GAWTC 4 cut(s) 582, 649, 848, 1067
Tru1I TTAA 4 cut(s) 138, 671, 837, 981
Tru9I TTAA 4 cut(s) 138, 671, 837, 981
TscAI CASTG 3 cut(s) 387, 792, 1110
TseFI GTSAC 2 cut(s) 35, 941
Tsp45I GTSAC 2 cut(s) 35, 941
TspDTI ATGAA 6 cut(s) 17, 270, 653, 728, 747, 1189
TspGWI ACGGA 1 cut(s) 1058
TspRI CASTG 3 cut(s) 387, 792, 1110
Vha464I CTTAAG 1 cut(s) 670
VpaK11BI GGWCC 1 cut(s) 1134
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 1 cut(s) 734
XceI RCATGY 2 cut(s) 20, 949
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 28
XspI CTAG 1 cut(s) 231
ZraI GACGTC 1 cut(s) 1259
Zsp2I ATGCAT 2 cut(s) 18, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.