Prupe.8G269000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0016355
Physical Location & Seq
Reverse (-)
22388021 .. 22390078
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G269000.1

Sequence Viewer

Length: 1197 bp
ATGAAGAACCAGCTGCTCTGTTCCAGCACAGATGAATCAACTACAGACGAGAATGATGAAGAGTACTGGCCAAGATCAGTAGCTGCTAATAATAATTGTTGGTGGAGATCATGGGGTGCAAAGTTTGATGTTAAGATGATGAAGGTTGATCCAAGGATGAGAGTGGTGAGAGAGTTGGAGAGACTGGCTTTGGTGGCAACGCACAGTCATCACGAAGGGCTGAATGAGCTCAGGCACAAGCTGCACATGTATCGATCAGGTGATTTCTGGATGCCTATAGGAGGTATCACTAAGGAAAACATGGACATCCCACCGCTGGCCACAATTCTCTTGGTTGGCTTCTCTGCTTCTGGCAAGACCTCCCTCGTCAACCTTATGTACTCTGTTTTGGGGCGCTCTGGACTCGTACCCTTTGCTCAAACATCACCGCCGGAGACAGGAAGTTATTCTTCAAATCATAGTAGTAAATCTAGATCTAGCATGGTTTTGAAAGAGCACAATGTGCTAAGGTCTTTGCGAAGTGGATTCTGTGTGTTTGACTCGAGGGGATTCGAGTACGACCAAACGGGTGAGGGTGTTGAAGAACAAGTGTCAAATTGGATGAGTGACGGGGTTCGCCATAACCAAGTGTGCTTAAGACCAGGCGACGATGCTGCGTTAATGGAACATGAAGAATATTCGGCTTCAAAGTGTGTGAGGAGGAGAGTGAATTGTGCAATGGTGGTGGCTAACATGGCAGAAATCTACAAGGCATTGCAGGCTGGTGATTCTAAGCCAATGGAGGCCACAAGGCAGCTTTTTTGCTCTGTCAACGCTTTCACAAATTGCAATGATGATGAGAGGCCTATCTTGATCTTGACACACGGCGACATGTTATCAACTGAGGAGAGGATTGAAGGGCGGCTCAAAATCTGTGAAAGTGTGGGTGTATCGGAGACTAGTGGAGTATATGACATCGTGTGCCTTACCGAGTACGGATTTCTGGCAGAAGAATCAGACCCGGTTTCAGCCTATGCCGTCACTGAAGCAGTGTATAGGGCATTGCTGATATCGGACAGAACCCACTCACCCAAGAAAAGCCTTGAGGACTGGGCATTGCTTGTATTATCCTGGATCATGTGCTTTCTTGGCTCTCTATTTGCTCTGCTTGCTCAGATTTGCCTCAAACTCGGTCGACACAGCAAGGATATATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

399

Amino Acids

44.72

Weight (kDa)

5.69

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016355)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39660 FvH4_5g39660
malus_domestica MD03G1298300.v1.1
prunus_persica Prupe.8G269000_v2.0.a1
pyrus_communis pycom03g23620
rosa_chinensis RchiOBHm_Chr7g0241971
rosa_laevigata RLG00000000525
rosa_multiflora Rmu_sc0003266.1_g000005
rosa_roxburghii Rroxscaffold_3G00218420
rosa_rugosa Rorug07G0349400
rosa_samantha Rh7AG503400 Rh7BG474600 Rh7CG520200 Rh7DG489000
rosa_wichuraiana Rw7G042570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1174
AciI CCGC 3 cut(s) 314, 428, 901
AclWI GGATC 2 cut(s) 143, 1121
AcoI YGGCCR 2 cut(s) 68, 318
AcuI CTGAAG 1 cut(s) 1044
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 5 cut(s) 65, 380, 408, 557, 974
AfiI CCNNNNNNNGG 3 cut(s) 281, 316, 437
AflII CTTAAG 1 cut(s) 634
AflIII ACRYGT 2 cut(s) 246, 870
AgsI TTSAA 5 cut(s) 453, 490, 581, 687, 896
AhlI ACTAGT 1 cut(s) 938
AjnI CCWGG 2 cut(s) 640, 1109
AluBI AGCT 5 cut(s) 13, 83, 229, 241, 796
AluI AGCT 5 cut(s) 13, 83, 229, 241, 796
Alw21I GWGCWC 2 cut(s) 231, 498
Alw26I GTCTC 3 cut(s) 175, 428, 929
AlwI GGATC 2 cut(s) 143, 1121
AlwNI CAGNNNCTG 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 4 cut(s) 68, 318, 783, 842
ApeKI GCWGC 5 cut(s) 13, 83, 241, 653, 793
Asp700I GAANNNNTTC 1 cut(s) 445
AspLEI GCGC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 1001
AsuHPI GGTGA 6 cut(s) 178, 272, 417, 581, 776, 1059
AvaI CYCGRG 1 cut(s) 541
BalI TGGCCA 2 cut(s) 70, 320
BanII GRGCYC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 231, 498
BbvI GCAGC 4 cut(s) 70, 228, 640, 805
BceAI ACGGC 2 cut(s) 880, 1001
BcgI CGANNNNNNTGC 4 cut(s) 233, 267, 635, 669
BciT130I CCWGG 2 cut(s) 642, 1111
BcnI CCSGG 1 cut(s) 1001
BcoDI GTCTC 3 cut(s) 175, 428, 929
BcuI ACTAGT 1 cut(s) 938
BfaI CTAG 3 cut(s) 471, 477, 939
BfmI CTRYAG 2 cut(s) 42, 276
BfoI RGCGCY 1 cut(s) 397
BfrI CTTAAG 1 cut(s) 634
BglII AGATCT 1 cut(s) 473
BisI GCNGC 6 cut(s) 14, 84, 242, 654, 794, 902
BlsI GCNGC 6 cut(s) 15, 85, 243, 655, 795, 903
BmcAI AGTACT 1 cut(s) 65
Bme1390I CCNGG 3 cut(s) 642, 1001, 1111
BmeT110I CYCGRG 1 cut(s) 541
BmrFI CCNGG 3 cut(s) 642, 1001, 1111
BmrI ACTGGG 1 cut(s) 1099
BmsI GCATC 2 cut(s) 261, 640
BmuI ACTGGG 1 cut(s) 1099
Bpu10I CCTNAGC 2 cut(s) 230, 506
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 1 cut(s) 1001
Bsa29I ATCGAT 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 3 cut(s) 281, 316, 437
Bse1I ACTGG 3 cut(s) 71, 189, 1094
Bse3DI GCAATG 5 cut(s) 723, 752, 835, 1040, 1094
BseBI CCWGG 2 cut(s) 642, 1111
BseCI ATCGAT 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 4 cut(s) 162, 276, 306, 606
BseLI CCNNNNNNNGG 3 cut(s) 281, 316, 437
BseMI GCAATG 5 cut(s) 723, 752, 835, 1040, 1094
BseMII CTCAG 3 cut(s) 244, 873, 1166
BseNI ACTGG 3 cut(s) 71, 189, 1094
BseRI GAGGAG 3 cut(s) 712, 715, 899
BseXI GCAGC 4 cut(s) 70, 228, 640, 805
BsgI GTGCAG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 1174
BshFI GGCC 4 cut(s) 70, 320, 785, 844
BshVI ATCGAT 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 1174
BsiHKAI GWGCWC 2 cut(s) 231, 498
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 2 cut(s) 431, 1001
BslI CCNNNNNNNGG 3 cut(s) 281, 316, 437
BsmAI GTCTC 3 cut(s) 175, 428, 929
BsnI GGCC 4 cut(s) 70, 320, 785, 844
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 2 cut(s) 231, 498
Bsp143I GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
BspACI CCGC 3 cut(s) 314, 428, 901
BspANI GGCC 4 cut(s) 70, 320, 785, 844
BspCNI CTCAG 3 cut(s) 243, 874, 1165
BspDI ATCGAT 1 cut(s) 253
BspPI GGATC 2 cut(s) 143, 1121
BspTI CTTAAG 1 cut(s) 634
BsrDI GCAATG 5 cut(s) 723, 752, 835, 1040, 1094
BsrI ACTGG 3 cut(s) 71, 189, 1094
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 2 cut(s) 642, 1111
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 54
BstAFI CTTAAG 1 cut(s) 634
BstAPI GCANNNNNTGC 2 cut(s) 241, 502
BstC8I GCNNGC 3 cut(s) 318, 759, 1149
BstDEI CTNAG 6 cut(s) 230, 291, 506, 771, 882, 1152
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 4 cut(s) 162, 276, 306, 606
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 7 cut(s) 77, 110, 151, 257, 476, 855, 1116
BstMAI GTCTC 3 cut(s) 175, 428, 929
BstMBI GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
BstMCI CGRYCG 1 cut(s) 1174
BstMWI GCNNNNNNNGC 8 cut(s) 194, 226, 241, 502, 734, 758, 1128, 1148
BstNI CCWGG 2 cut(s) 642, 1111
BstNSI RCATGY 2 cut(s) 250, 874
BstSCI CCNGG 3 cut(s) 640, 999, 1109
BstSFI CTRYAG 2 cut(s) 42, 276
BstV1I GCAGC 4 cut(s) 70, 228, 640, 805
BstX2I RGATCY 1 cut(s) 473
BstYI RGATCY 1 cut(s) 473
Bsu15I ATCGAT 1 cut(s) 253
BsuRI GGCC 4 cut(s) 70, 320, 785, 844
BsuTUI ATCGAT 1 cut(s) 253
BtsCI GGATG 4 cut(s) 162, 276, 306, 606
BtsI GCAGTG 1 cut(s) 1035
BtsIMutI CAGTG 2 cut(s) 1020, 1035
Cac8I GCNNGC 3 cut(s) 318, 759, 1149
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 396
ClaI ATCGAT 1 cut(s) 253
Csp6I GTAC 5 cut(s) 64, 379, 407, 556, 973
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 8 cut(s) 111, 247, 301, 481, 668, 733, 871, 1117
CviQI GTAC 5 cut(s) 64, 379, 407, 556, 973
DdeI CTNAG 6 cut(s) 230, 291, 506, 771, 882, 1152
DpnI GATC 7 cut(s) 76, 109, 150, 256, 475, 854, 1115
DpnII GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
DraIII CACNNNGTG 1 cut(s) 502
EaeI YGGCCR 2 cut(s) 68, 318
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 152
Eco147I AGGCCT 1 cut(s) 844
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 1050
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 1044
Eco88I CYCGRG 1 cut(s) 541
EcoICRI GAGCTC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 640, 1109
EcoRV GATATC 1 cut(s) 1050
EcoT14I CCWWGG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 8 cut(s) 114, 250, 304, 484, 671, 736, 874, 1120
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FatI CATG 8 cut(s) 110, 246, 300, 480, 667, 732, 870, 1116
FblI GTMKAC 1 cut(s) 1174
Fnu4HI GCNGC 6 cut(s) 14, 84, 242, 654, 794, 902
FokI GGATG 4 cut(s) 169, 283, 293, 613
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 6 cut(s) 14, 84, 242, 654, 794, 902
FspBI CTAG 3 cut(s) 471, 477, 939
GlaI GCGC 1 cut(s) 395
GluI GCNGC 6 cut(s) 14, 84, 242, 654, 794, 902
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 4 cut(s) 70, 320, 785, 844
HapII CCGG 2 cut(s) 431, 1001
HhaI GCGC 1 cut(s) 396
Hin1II CATG 8 cut(s) 114, 250, 304, 484, 671, 736, 874, 1120
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 3 cut(s) 370, 811, 1175
HindII GTYRAC 3 cut(s) 370, 811, 1175
HinfI GANTC 7 cut(s) 35, 402, 525, 539, 549, 767, 992
HpaII CCGG 2 cut(s) 431, 1001
HphI GGTGA 6 cut(s) 178, 272, 417, 581, 776, 1059
Hpy166II GTNNAC 3 cut(s) 370, 811, 1175
Hpy188I TCNGA 4 cut(s) 934, 997, 1054, 1155
Hpy188III TCNNGA 6 cut(s) 212, 268, 399, 471, 850, 856
Hpy8I GTNNAC 3 cut(s) 370, 811, 1175
Hpy99I CGWCG 1 cut(s) 650
HpyAV CCTTC 3 cut(s) 136, 209, 890
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 5 cut(s) 119, 244, 716, 757, 828
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 226, 241, 502, 734, 758, 1128, 1148
HpyF3I CTNAG 6 cut(s) 230, 291, 506, 771, 882, 1152
Hsp92II CATG 8 cut(s) 114, 250, 304, 484, 671, 736, 874, 1120
HspAI GCGC 1 cut(s) 394
Kzo9I GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
Lsp1109I GCAGC 4 cut(s) 70, 228, 640, 805
LweI GCATC 2 cut(s) 261, 640
MaeI CTAG 3 cut(s) 471, 477, 939
MaeIII GTNAC 2 cut(s) 605, 1018
MalI GATC 7 cut(s) 76, 109, 150, 256, 475, 854, 1115
MboI GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
MboII GAAGA 6 cut(s) 16, 71, 441, 593, 683, 1001
MflI RGATCY 1 cut(s) 473
MhlI GDGCHC 2 cut(s) 231, 498
MlsI TGGCCA 2 cut(s) 70, 320
MluCI AATT 5 cut(s) 94, 324, 595, 709, 823
MluNI TGGCCA 2 cut(s) 70, 320
MlyI GAGTC 2 cut(s) 396, 533
MmeI TCCRAC 1 cut(s) 156
Mox20I TGGCCA 2 cut(s) 70, 320
MroXI GAANNNNTTC 1 cut(s) 445
MscI TGGCCA 2 cut(s) 70, 320
MseI TTAA 4 cut(s) 132, 635, 659, 1195
Msp20I TGGCCA 2 cut(s) 70, 320
MspA1I CMGCKG 2 cut(s) 13, 316
MspCI CTTAAG 1 cut(s) 634
MspI CCGG 2 cut(s) 431, 1001
MspR9I CCNGG 3 cut(s) 642, 1001, 1111
MvaI CCWGG 2 cut(s) 642, 1111
MwoI GCNNNNNNNGC 8 cut(s) 194, 226, 241, 502, 734, 758, 1128, 1148
NciI CCSGG 1 cut(s) 1001
NdeII GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
NlaIII CATG 8 cut(s) 114, 250, 304, 484, 671, 736, 874, 1120
NmuCI GTSAC 2 cut(s) 605, 1018
NspI RCATGY 2 cut(s) 250, 874
PaeR7I CTCGAG 1 cut(s) 541
PceI AGGCCT 1 cut(s) 844
PciI ACATGT 2 cut(s) 246, 870
PdmI GAANNNNTTC 1 cut(s) 445
PfeI GAWTC 5 cut(s) 35, 525, 549, 767, 992
PfoI TCCNGGA 1 cut(s) 1109
PkrI GCNGC 6 cut(s) 15, 85, 243, 655, 795, 903
PleI GAGTC 2 cut(s) 396, 533
PpsI GAGTC 2 cut(s) 396, 533
PscI ACATGT 2 cut(s) 246, 870
Psp124BI GAGCTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 640, 1109
PspGI CCWGG 2 cut(s) 640, 1109
PspXI VCTCGAGB 1 cut(s) 541
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 473
PvuII CAGCTG 1 cut(s) 13
RsaI GTAC 5 cut(s) 65, 380, 408, 557, 974
RsaNI GTAC 5 cut(s) 64, 379, 407, 556, 973
SacI GAGCTC 1 cut(s) 231
SalI GTCGAC 1 cut(s) 1173
SaqAI TTAA 4 cut(s) 132, 635, 659, 1195
SatI GCNGC 6 cut(s) 14, 84, 242, 654, 794, 902
Sau3AI GATC 7 cut(s) 74, 107, 148, 254, 473, 852, 1113
ScaI AGTACT 1 cut(s) 65
SchI GAGTC 2 cut(s) 396, 533
ScrFI CCNGG 3 cut(s) 642, 1001, 1111
SduI GDGCHC 2 cut(s) 231, 498
SfaNI GCATC 2 cut(s) 261, 640
SfcI CTRYAG 2 cut(s) 42, 276
Sfr274I CTCGAG 1 cut(s) 541
SlaI CTCGAG 1 cut(s) 541
SmlI CTYRAG 3 cut(s) 541, 634, 1082
SmoI CTYRAG 3 cut(s) 541, 634, 1082
SpeI ACTAGT 1 cut(s) 938
Sse9I AATT 5 cut(s) 94, 324, 595, 709, 823
SseBI AGGCCT 1 cut(s) 844
SsiI CCGC 3 cut(s) 314, 428, 901
SspI AATATT 1 cut(s) 677
SspMI CTAG 3 cut(s) 471, 477, 939
SstI GAGCTC 1 cut(s) 231
StuI AGGCCT 1 cut(s) 844
StyD4I CCNGG 3 cut(s) 640, 999, 1109
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 4 cut(s) 253, 542, 552, 1174
TaqII GACCGA 1 cut(s) 1160
TasI AATT 5 cut(s) 94, 324, 595, 709, 823
TatI WGTACW 2 cut(s) 63, 378
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 5 cut(s) 35, 525, 549, 767, 992
Tru1I TTAA 4 cut(s) 132, 635, 659, 1195
Tru9I TTAA 4 cut(s) 132, 635, 659, 1195
TscAI CASTG 2 cut(s) 1027, 1035
TseFI GTSAC 2 cut(s) 605, 1018
TseI GCWGC 5 cut(s) 13, 83, 241, 653, 793
Tsp45I GTSAC 2 cut(s) 605, 1018
TspDTI ATGAA 5 cut(s) 17, 48, 72, 155, 684
TspGWI ACGGA 1 cut(s) 990
TspRI CASTG 2 cut(s) 1027, 1035
Vha464I CTTAAG 1 cut(s) 634
XagI CCTNNNNNAGG 1 cut(s) 279
XbaI TCTAGA 1 cut(s) 470
XceI RCATGY 2 cut(s) 250, 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 1174
XmnI GAANNNNTTC 1 cut(s) 445
XspI CTAG 3 cut(s) 471, 477, 939
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.