Rh7AG503400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016355
Physical Location & Seq
Forward (+)
70277560 .. 70279757
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG503400.1

Sequence Viewer

Length: 921 bp
ATGAAGAACCATATGCATGTATGTAATTCGAGCAGTGACGATGAGAAGATTATAATTAGTGATGAGTCGTCAGGATCAGTATCATCAATAGAACCTTACTGCTGGTGGAGATCGGCGGCAAAGTACGATGAGTATGTTAAGCTCCAGTTTGAGGGCGGCCTGCCAGACGTGTCAAGGCTGACAACAAGGATGAGAGTGTTCAAAGAGTTGGAGAGATTAGCTTTGGTTGCTAGTGGCTCTACTAGTACTCGTGAATATCATTATCATTACAGTGAAGGTGGTGTGAATGAGCTCAGGCACAAGCTCCTCACGTATCGATCAGGAGATTTCTGGATGCCTATTGGAGGAATTAGTAAGGAGAAGATGGACATTCCACCAGTGGCCACAATTCTCTTGGTCGGCTTCTCTGCTTCCGGCAAGAGCTCGCTTGTCAATCTAATGTATAGTATTTTGGGTCGCTCTGGACTCATACCTTTTGCTCAAACATCCTCCTCCTCAGGAAGTGGTAGAACCAAGCTTTTGAAAGAGCACAATGTAGTGAGGTCTTTGCGTAGTGGGTTTTGCGTGTACGACTCAGGGGGATTCGATTACAATGAAATCAGTGAAACTAGTGTTGGTGAAGAATTGTCAAGTTGGATGAATGATGGGGTTCACCAGAACCAAGAATGCTTAAGATCGGGAGATCTGGACGACGTCCCTCATCATGATGGTGCAGGTGATGATAGGCATGTCGATTTTCGAACTATGTCAAATTATAATTGGTCTTCAAAGTTTGTGAGGAGAACAGTGAATTCTGTTATGGTGGTGGCTAACATGGCAGAGATCTACAAGGCATTTAAAGCTGGTGATTCTAAGCCAATGGAGGCCACAAGACAGCTTTTCTGCTCAAGTGCATTCCGAAATTGCAGTAAGTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

306

Amino Acids

34.17

Weight (kDa)

6.56

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016355)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39660 FvH4_5g39660
malus_domestica MD03G1298300.v1.1
prunus_persica Prupe.8G269000_v2.0.a1
pyrus_communis pycom03g23620
rosa_chinensis RchiOBHm_Chr7g0241971
rosa_laevigata RLG00000000525
rosa_multiflora Rmu_sc0003266.1_g000005
rosa_roxburghii Rroxscaffold_3G00218420
rosa_rugosa Rorug07G0349400
rosa_samantha Rh7AG503400 Rh7BG474600 Rh7CG520200 Rh7DG489000
rosa_wichuraiana Rw7G042570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 53, 756
AarI CACCTGC 1 cut(s) 704
AatII GACGTC 1 cut(s) 696
Acc36I ACCTGC 1 cut(s) 704
AciI CCGC 2 cut(s) 116, 156
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 790
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 3 cut(s) 125, 247, 569
AfiI CCNNNNNNNGG 2 cut(s) 151, 344
AflII CTTAAG 1 cut(s) 670
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 3 cut(s) 202, 523, 768
AhlI ACTAGT 2 cut(s) 242, 608
AjiI CACGTC 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AluBI AGCT 9 cut(s) 142, 221, 292, 304, 423, 517, 842, 877, 917
AluI AGCT 9 cut(s) 142, 221, 292, 304, 423, 517, 842, 877, 917
Alw21I GWGCWC 3 cut(s) 294, 425, 531
AlwI GGATC 1 cut(s) 82
AoxI GGCC 3 cut(s) 157, 381, 864
ApoI RAATTY 1 cut(s) 790
AsuHPI GGTGA 4 cut(s) 629, 644, 728, 857
AsuII TTCGAA 1 cut(s) 739
AxyI CCTNAGG 1 cut(s) 496
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 294, 425
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 756
Bbv12I GWGCWC 3 cut(s) 294, 425, 531
BccI CCATC 3 cut(s) 358, 638, 701
BcuI ACTAGT 2 cut(s) 242, 608
BfaI CTAG 3 cut(s) 231, 243, 609
BfrI CTTAAG 1 cut(s) 670
BfuAI ACCTGC 1 cut(s) 704
BglII AGATCT 2 cut(s) 682, 822
BisI GCNGC 2 cut(s) 117, 157
BlsI GCNGC 2 cut(s) 118, 158
BmcAI AGTACT 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 169
BmsI GCATC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 756
BpmI CTGGAG 1 cut(s) 128
Bpu10I CCTNAGC 1 cut(s) 293
Bpu14I TTCGAA 1 cut(s) 739
BpuEI CTTGAG 1 cut(s) 871
Bsa29I ATCGAT 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 693
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 344
Bse1I ACTGG 2 cut(s) 145, 377
Bse21I CCTNAGG 1 cut(s) 496
Bse8I GATNNNNATC 1 cut(s) 79
BseCI ATCGAT 1 cut(s) 316
BseGI GGATG 4 cut(s) 195, 339, 485, 642
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 2 cut(s) 151, 344
BseMII CTCAG 3 cut(s) 307, 510, 588
BseNI ACTGG 2 cut(s) 145, 377
BseRI GAGGAG 4 cut(s) 296, 481, 484, 793
BsgI GTGCAG 1 cut(s) 732
BshFI GGCC 3 cut(s) 159, 383, 866
BshVI ATCGAT 1 cut(s) 316
BsiHKAI GWGCWC 3 cut(s) 294, 425, 531
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 680
BslI CCNNNNNNNGG 2 cut(s) 151, 344
BsmFI GGGAC 1 cut(s) 680
BsmI GAATGC 2 cut(s) 671, 893
BsnI GGCC 3 cut(s) 159, 383, 866
Bsp119I TTCGAA 1 cut(s) 739
Bsp1286I GDGCHC 3 cut(s) 294, 425, 531
Bsp143I GATC 6 cut(s) 74, 110, 317, 674, 682, 822
BspACI CCGC 2 cut(s) 116, 156
BspANI GGCC 3 cut(s) 159, 383, 866
BspCNI CTCAG 3 cut(s) 306, 509, 587
BspDI ATCGAT 1 cut(s) 316
BspHI TCATGA 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 704
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 739
BspTI CTTAAG 1 cut(s) 670
BsrI ACTGG 2 cut(s) 145, 377
BssMI GATC 6 cut(s) 74, 110, 317, 674, 682, 822
BssNI GRCGYC 1 cut(s) 693
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 272, 787
BstACI GRCGYC 1 cut(s) 693
BstAFI CTTAAG 1 cut(s) 670
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 739
BstC8I GCNNGC 2 cut(s) 161, 425
BstDEI CTNAG 5 cut(s) 293, 496, 574, 852, 918
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 4 cut(s) 195, 339, 485, 642
BstKTI GATC 6 cut(s) 77, 113, 320, 677, 685, 825
BstMBI GATC 6 cut(s) 74, 110, 317, 674, 682, 822
BstMWI GCNNNNNNNGC 3 cut(s) 227, 815, 839
BstNSI RCATGY 2 cut(s) 20, 731
BstV2I GAAGAC 1 cut(s) 756
BstX2I RGATCY 2 cut(s) 682, 822
BstYI RGATCY 2 cut(s) 682, 822
Bsu15I ATCGAT 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 496
BsuRI GGCC 3 cut(s) 159, 383, 866
BsuTUI ATCGAT 1 cut(s) 316
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 195, 339, 485, 642
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 5 cut(s) 40, 277, 384, 607, 792
BveI ACCTGC 1 cut(s) 704
Cac8I GCNNGC 2 cut(s) 161, 425
CciI TCATGA 1 cut(s) 703
ClaI ATCGAT 1 cut(s) 316
Csp6I GTAC 3 cut(s) 124, 246, 568
CviAII CATG 4 cut(s) 17, 704, 728, 814
CviQI GTAC 3 cut(s) 124, 246, 568
DdeI CTNAG 5 cut(s) 293, 496, 574, 852, 918
DpnI GATC 6 cut(s) 76, 112, 319, 676, 684, 824
DpnII GATC 6 cut(s) 74, 110, 317, 674, 682, 822
DraI TTTAAA 1 cut(s) 838
EaeI YGGCCR 1 cut(s) 381
Ecl136II GAGCTC 2 cut(s) 292, 423
Eco24I GRGCYC 2 cut(s) 294, 425
Eco53kI GAGCTC 2 cut(s) 292, 423
Eco81I CCTNAGG 1 cut(s) 496
EcoICRI GAGCTC 2 cut(s) 292, 423
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 790
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 294, 425
FaeI CATG 4 cut(s) 20, 707, 731, 817
FaqI GGGAC 1 cut(s) 680
FatI CATG 4 cut(s) 16, 703, 727, 813
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 117, 157
FokI GGATG 4 cut(s) 202, 346, 472, 649
FriOI GRGCYC 2 cut(s) 294, 425
Fsp4HI GCNGC 2 cut(s) 117, 157
FspBI CTAG 3 cut(s) 231, 243, 609
GluI GCNGC 2 cut(s) 117, 157
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 3 cut(s) 159, 383, 866
HapII CCGG 1 cut(s) 414
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 4 cut(s) 20, 707, 731, 817
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 5 cut(s) 65, 465, 572, 582, 848
HpaII CCGG 1 cut(s) 414
HphI GGTGA 4 cut(s) 629, 644, 728, 857
Hpy166II GTNNAC 2 cut(s) 568, 652
Hpy188I TCNGA 1 cut(s) 899
Hpy188III TCNNGA 9 cut(s) 72, 251, 321, 331, 462, 498, 678, 686, 704
Hpy8I GTNNAC 2 cut(s) 568, 652
Hpy99I CGWCG 1 cut(s) 695
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 272, 787
HpyCH4IV ACGT 3 cut(s) 168, 311, 693
HpyCH4V TGCA 4 cut(s) 16, 713, 893, 906
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 815, 839
HpyF3I CTNAG 5 cut(s) 293, 496, 574, 852, 918
HpySE526I ACGT 3 cut(s) 168, 311, 693
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 4 cut(s) 20, 707, 731, 817
Kzo9I GATC 6 cut(s) 74, 110, 317, 674, 682, 822
LmnI GCTCC 2 cut(s) 147, 309
LweI GCATC 1 cut(s) 324
MaeI CTAG 3 cut(s) 231, 243, 609
MaeII ACGT 3 cut(s) 168, 311, 693
MaeIII GTNAC 1 cut(s) 35
MalI GATC 6 cut(s) 76, 112, 319, 676, 684, 824
MboI GATC 6 cut(s) 74, 110, 317, 674, 682, 822
MboII GAAGA 5 cut(s) 16, 58, 373, 632, 756
MflI RGATCY 2 cut(s) 682, 822
MhlI GDGCHC 3 cut(s) 294, 425, 531
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 9 cut(s) 25, 54, 348, 387, 623, 751, 757, 790, 901
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 3 cut(s) 74, 459, 566
MmeI TCCRAC 2 cut(s) 189, 614
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 18
MscI TGGCCA 1 cut(s) 383
MseI TTAA 3 cut(s) 138, 671, 837
MslI CAYNNNNRTG 4 cut(s) 15, 270, 705, 708
Msp20I TGGCCA 1 cut(s) 383
MspCI CTTAAG 1 cut(s) 670
MspI CCGG 1 cut(s) 414
Mva1269I GAATGC 2 cut(s) 671, 893
MwoI GCNNNNNNNGC 3 cut(s) 227, 815, 839
NdeI CATATG 1 cut(s) 12
NdeII GATC 6 cut(s) 74, 110, 317, 674, 682, 822
NlaIII CATG 4 cut(s) 20, 707, 731, 817
NmuCI GTSAC 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 18
NspI RCATGY 2 cut(s) 20, 731
NspV TTCGAA 1 cut(s) 739
PagI TCATGA 1 cut(s) 703
PaqCI CACCTGC 1 cut(s) 704
PctI GAATGC 2 cut(s) 671, 893
PfeI GAWTC 2 cut(s) 582, 848
PflFI GACNNNGTC 1 cut(s) 692
PkrI GCNGC 2 cut(s) 118, 158
PleI GAGTC 3 cut(s) 73, 459, 566
PpsI GAGTC 3 cut(s) 73, 459, 566
Ppu21I YACGTR 1 cut(s) 312
PsiI TTATAA 2 cut(s) 53, 756
Psp124BI GAGCTC 2 cut(s) 294, 425
PsuI RGATCY 2 cut(s) 682, 822
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 3 cut(s) 125, 247, 569
RsaNI GTAC 3 cut(s) 124, 246, 568
RseI CAYNNNNRTG 4 cut(s) 15, 270, 705, 708
SacI GAGCTC 2 cut(s) 294, 425
SaqAI TTAA 3 cut(s) 138, 671, 837
SatI GCNGC 2 cut(s) 117, 157
Sau3AI GATC 6 cut(s) 74, 110, 317, 674, 682, 822
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 3 cut(s) 74, 459, 566
SduI GDGCHC 3 cut(s) 294, 425, 531
SfaNI GCATC 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 739
SmiMI CAYNNNNRTG 4 cut(s) 15, 270, 705, 708
SmlI CTYRAG 2 cut(s) 670, 886
SmoI CTYRAG 2 cut(s) 670, 886
SpeI ACTAGT 2 cut(s) 242, 608
Sse9I AATT 9 cut(s) 25, 54, 348, 387, 623, 751, 757, 790, 901
SsiI CCGC 2 cut(s) 116, 156
SspMI CTAG 3 cut(s) 231, 243, 609
SstI GAGCTC 2 cut(s) 294, 425
TaaI ACNGT 2 cut(s) 272, 787
TaiI ACGT 3 cut(s) 171, 314, 696
TaqI TCGA 5 cut(s) 29, 316, 585, 732, 739
TasI AATT 9 cut(s) 25, 54, 348, 387, 623, 751, 757, 790, 901
TatI WGTACW 1 cut(s) 245
TauI GCSGC 2 cut(s) 119, 159
TfiI GAWTC 2 cut(s) 582, 848
Tru1I TTAA 3 cut(s) 138, 671, 837
Tru9I TTAA 3 cut(s) 138, 671, 837
TscAI CASTG 5 cut(s) 40, 277, 384, 607, 792
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 17, 609, 653
TspRI CASTG 5 cut(s) 40, 277, 384, 607, 792
Tth111I GACNNNGTC 1 cut(s) 692
Vha464I CTTAAG 1 cut(s) 670
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 790
XceI RCATGY 2 cut(s) 20, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 3 cut(s) 231, 243, 609
ZraI GACGTC 1 cut(s) 694
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.