Rh7DG489000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016355
Physical Location & Seq
Forward (+)
69360001 .. 69362298
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG489000.1

Sequence Viewer

Length: 918 bp
ATGAAGAACCATATGCATGTATGTAATTCGAGCAGTGACGATGAGAAGATTATAATTAGTGATGAGTCGTCAGGATCAGTATCATCAATAGAACCTTACTGCTGGTGGAGATCGGCGTCAAAGTACGATGAGTATGTTAAGCTCAAGTTCGAGGGCGGCCTGCCAGACGTGTCAAGGCTGACAACAAGGATGAGAGTGTTCAAAGAGTTGGAGAGATTAGCTTTGGTTTCTAGTGGCTCTACTAGTACTCGTGAATATCATTATCATGACAGTGAAGGTGGTGTGAATGAGCTCAGGCACAAGCTCCTCACGTATCGATCAGGAGATTTCTGGATGCCTATTGGAGGAATTAGTAAGGAGAAGATGGACATTCCACCAGCGGCCACAATTCTCTTGGTCGGCTTCTCTGCTTCCGGCAAGAGCTCGCTTGTCAATCTAATATATAGTGTTTTGGGTCGCTCTGGACTCATACCTTTTGCTCAAACATCCTCCTCAGGAAGTGGTAGAACCAAGCTTTTGAAAGAGCACAATGTGGTGAGGTCTTTGCGTAGTGGGTTTTGCGTGTACGACTCAGGGGGATTCGATTACAATGAAATCAGTGAAACTAGTGTTGGTGAAGAATTGTCAAGTTGGATGAATGATGGGGTTCACCAGAACCAAGAATGCTTAAGATCGGGAGATCTGGACGACGTCCCTCATCATGATGTTGCAGGTGATGATAGGCATGTCGATTTTCGAACTATGTCAAATTATAATTGGTCTTCAAAGTTTGTGAGGAGGACAGTGAATTCTGTTATGGTGGTGGCTAACATGGCAGAGATCTACAAGGCATTTAAAGCTGGTGATTCTAAGCCAATGGAGGCCACAAGACAGCTTTTCTGTTCAAGTGCATTCCGAAATTGCAGTAAGTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

305

Amino Acids

34.05

Weight (kDa)

6.56

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016355)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39660 FvH4_5g39660
malus_domestica MD03G1298300.v1.1
prunus_persica Prupe.8G269000_v2.0.a1
pyrus_communis pycom03g23620
rosa_chinensis RchiOBHm_Chr7g0241971
rosa_laevigata RLG00000000525
rosa_multiflora Rmu_sc0003266.1_g000005
rosa_roxburghii Rroxscaffold_3G00218420
rosa_rugosa Rorug07G0349400
rosa_samantha Rh7AG503400 Rh7BG474600 Rh7CG520200 Rh7DG489000
rosa_wichuraiana Rw7G042570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 53, 753
AarI CACCTGC 1 cut(s) 701
AatII GACGTC 1 cut(s) 693
Acc36I ACCTGC 1 cut(s) 701
AciI CCGC 2 cut(s) 156, 380
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 787
AcyI GRCGYC 2 cut(s) 116, 690
AdeI CACNNNGTG 1 cut(s) 532
AfaI GTAC 3 cut(s) 125, 247, 566
AfiI CCNNNNNNNGG 1 cut(s) 344
AflII CTTAAG 1 cut(s) 667
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 4 cut(s) 202, 520, 765, 885
AhlI ACTAGT 2 cut(s) 242, 605
AjiI CACGTC 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 594, 626
AluBI AGCT 9 cut(s) 142, 221, 292, 304, 423, 514, 839, 874, 914
AluI AGCT 9 cut(s) 142, 221, 292, 304, 423, 514, 839, 874, 914
Alw21I GWGCWC 3 cut(s) 294, 425, 528
AlwI GGATC 1 cut(s) 82
AoxI GGCC 3 cut(s) 157, 381, 861
ApoI RAATTY 1 cut(s) 787
AsuHPI GGTGA 5 cut(s) 547, 626, 641, 725, 854
AsuII TTCGAA 1 cut(s) 736
AxyI CCTNAGG 1 cut(s) 493
BanII GRGCYC 2 cut(s) 294, 425
BauI CACGAG 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 3 cut(s) 294, 425, 528
BccI CCATC 2 cut(s) 358, 635
BcuI ACTAGT 2 cut(s) 242, 605
BfaI CTAG 3 cut(s) 231, 243, 606
BfrI CTTAAG 1 cut(s) 667
BfuAI ACCTGC 1 cut(s) 701
BglII AGATCT 2 cut(s) 679, 819
BisI GCNGC 2 cut(s) 157, 381
BlsI GCNGC 2 cut(s) 158, 382
BmcAI AGTACT 1 cut(s) 247
BmgBI CACGTC 1 cut(s) 169
BmsI GCATC 1 cut(s) 324
BpiI GAAGAC 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 293
Bpu14I TTCGAA 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 79
BsaHI GRCGYC 2 cut(s) 116, 690
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse21I CCTNAGG 1 cut(s) 493
Bse8I GATNNNNATC 1 cut(s) 79
BseCI ATCGAT 1 cut(s) 316
BseGI GGATG 4 cut(s) 195, 339, 485, 639
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 3 cut(s) 307, 507, 585
BseRI GAGGAG 3 cut(s) 296, 481, 790
BshFI GGCC 3 cut(s) 159, 383, 863
BshVI ATCGAT 1 cut(s) 316
BsiHKAI GWGCWC 3 cut(s) 294, 425, 528
BsiSI CCGG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 2 cut(s) 668, 890
BsnI GGCC 3 cut(s) 159, 383, 863
Bsp119I TTCGAA 1 cut(s) 736
Bsp1286I GDGCHC 3 cut(s) 294, 425, 528
Bsp143I GATC 6 cut(s) 74, 110, 317, 671, 679, 819
BspACI CCGC 2 cut(s) 156, 380
BspANI GGCC 3 cut(s) 159, 383, 863
BspCNI CTCAG 3 cut(s) 306, 506, 584
BspDI ATCGAT 1 cut(s) 316
BspHI TCATGA 2 cut(s) 265, 700
BspMI ACCTGC 1 cut(s) 701
BspPI GGATC 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 736
BspTI CTTAAG 1 cut(s) 667
BssMI GATC 6 cut(s) 74, 110, 317, 671, 679, 819
BssNI GRCGYC 2 cut(s) 116, 690
BssSI CACGAG 1 cut(s) 249
Bst2BI CACGAG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 272, 784
BstACI GRCGYC 2 cut(s) 116, 690
BstAFI CTTAAG 1 cut(s) 667
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 736
BstC8I GCNNGC 2 cut(s) 161, 425
BstDEI CTNAG 5 cut(s) 293, 493, 571, 849, 915
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 4 cut(s) 195, 339, 485, 639
BstKTI GATC 6 cut(s) 77, 113, 320, 674, 682, 822
BstMBI GATC 6 cut(s) 74, 110, 317, 671, 679, 819
BstMWI GCNNNNNNNGC 2 cut(s) 812, 836
BstNSI RCATGY 2 cut(s) 20, 728
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 2 cut(s) 679, 819
BstYI RGATCY 2 cut(s) 679, 819
Bsu15I ATCGAT 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 493
BsuRI GGCC 3 cut(s) 159, 383, 863
BsuTUI ATCGAT 1 cut(s) 316
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 195, 339, 485, 639
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 4 cut(s) 40, 277, 604, 789
BveI ACCTGC 1 cut(s) 701
Cac8I GCNNGC 2 cut(s) 161, 425
CciI TCATGA 2 cut(s) 265, 700
ClaI ATCGAT 1 cut(s) 316
CseI GACGC 1 cut(s) 105
Csp6I GTAC 3 cut(s) 124, 246, 565
CviAII CATG 5 cut(s) 17, 266, 701, 725, 811
CviQI GTAC 3 cut(s) 124, 246, 565
DdeI CTNAG 5 cut(s) 293, 493, 571, 849, 915
DpnI GATC 6 cut(s) 76, 112, 319, 673, 681, 821
DpnII GATC 6 cut(s) 74, 110, 317, 671, 679, 819
DraI TTTAAA 1 cut(s) 835
DraIII CACNNNGTG 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 381
Ecl136II GAGCTC 2 cut(s) 292, 423
Eco24I GRGCYC 2 cut(s) 294, 425
Eco53kI GAGCTC 2 cut(s) 292, 423
Eco81I CCTNAGG 1 cut(s) 493
EcoICRI GAGCTC 2 cut(s) 292, 423
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 787
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 294, 425
FaeI CATG 5 cut(s) 20, 269, 704, 728, 814
FaqI GGGAC 1 cut(s) 677
FatI CATG 5 cut(s) 16, 265, 700, 724, 810
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 157, 381
FokI GGATG 4 cut(s) 202, 346, 472, 646
FriOI GRGCYC 2 cut(s) 294, 425
Fsp4HI GCNGC 2 cut(s) 157, 381
FspBI CTAG 3 cut(s) 231, 243, 606
GluI GCNGC 2 cut(s) 157, 381
HaeIII GGCC 3 cut(s) 159, 383, 863
HapII CCGG 1 cut(s) 414
HgaI GACGC 1 cut(s) 105
Hin1I GRCGYC 2 cut(s) 116, 690
Hin1II CATG 5 cut(s) 20, 269, 704, 728, 814
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 5 cut(s) 65, 465, 569, 579, 845
HpaII CCGG 1 cut(s) 414
HphI GGTGA 5 cut(s) 547, 626, 641, 725, 854
Hpy166II GTNNAC 2 cut(s) 565, 649
Hpy188I TCNGA 1 cut(s) 896
Hpy8I GTNNAC 2 cut(s) 565, 649
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 2 cut(s) 272, 784
HpyCH4IV ACGT 3 cut(s) 168, 311, 690
HpyCH4V TGCA 4 cut(s) 16, 710, 890, 903
HpyF10VI GCNNNNNNNGC 2 cut(s) 812, 836
HpyF3I CTNAG 5 cut(s) 293, 493, 571, 849, 915
HpySE526I ACGT 3 cut(s) 168, 311, 690
Hsp92I GRCGYC 2 cut(s) 116, 690
Hsp92II CATG 5 cut(s) 20, 269, 704, 728, 814
Kzo9I GATC 6 cut(s) 74, 110, 317, 671, 679, 819
LmnI GCTCC 1 cut(s) 309
LweI GCATC 1 cut(s) 324
MaeI CTAG 3 cut(s) 231, 243, 606
MaeII ACGT 3 cut(s) 168, 311, 690
MaeIII GTNAC 1 cut(s) 35
MalI GATC 6 cut(s) 76, 112, 319, 673, 681, 821
MboI GATC 6 cut(s) 74, 110, 317, 671, 679, 819
MboII GAAGA 5 cut(s) 16, 58, 373, 629, 753
MflI RGATCY 2 cut(s) 679, 819
MhlI GDGCHC 3 cut(s) 294, 425, 528
MluCI AATT 9 cut(s) 25, 54, 348, 387, 620, 748, 754, 787, 898
MlyI GAGTC 3 cut(s) 74, 459, 563
MmeI TCCRAC 2 cut(s) 189, 611
Mph1103I ATGCAT 1 cut(s) 18
MseI TTAA 3 cut(s) 138, 668, 834
MslI CAYNNNNRTG 4 cut(s) 15, 264, 270, 702
MspA1I CMGCKG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 667
MspI CCGG 1 cut(s) 414
Mva1269I GAATGC 2 cut(s) 668, 890
MwoI GCNNNNNNNGC 2 cut(s) 812, 836
NdeI CATATG 1 cut(s) 12
NdeII GATC 6 cut(s) 74, 110, 317, 671, 679, 819
NlaIII CATG 5 cut(s) 20, 269, 704, 728, 814
NmuCI GTSAC 1 cut(s) 35
NsiI ATGCAT 1 cut(s) 18
NspI RCATGY 2 cut(s) 20, 728
NspV TTCGAA 1 cut(s) 736
PagI TCATGA 2 cut(s) 265, 700
PaqCI CACCTGC 1 cut(s) 701
PctI GAATGC 2 cut(s) 668, 890
PfeI GAWTC 2 cut(s) 579, 845
PflFI GACNNNGTC 1 cut(s) 689
PkrI GCNGC 2 cut(s) 158, 382
PleI GAGTC 3 cut(s) 73, 459, 563
PpsI GAGTC 3 cut(s) 73, 459, 563
Ppu21I YACGTR 1 cut(s) 312
PsiI TTATAA 2 cut(s) 53, 753
Psp124BI GAGCTC 2 cut(s) 294, 425
PsuI RGATCY 2 cut(s) 679, 819
PsyI GACNNNGTC 1 cut(s) 689
RsaI GTAC 3 cut(s) 125, 247, 566
RsaNI GTAC 3 cut(s) 124, 246, 565
RseI CAYNNNNRTG 4 cut(s) 15, 264, 270, 702
SacI GAGCTC 2 cut(s) 294, 425
SaqAI TTAA 3 cut(s) 138, 668, 834
SatI GCNGC 2 cut(s) 157, 381
Sau3AI GATC 6 cut(s) 74, 110, 317, 671, 679, 819
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 3 cut(s) 74, 459, 563
SduI GDGCHC 3 cut(s) 294, 425, 528
SfaNI GCATC 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 736
SmiMI CAYNNNNRTG 4 cut(s) 15, 264, 270, 702
SmlI CTYRAG 2 cut(s) 143, 667
SmoI CTYRAG 2 cut(s) 143, 667
SpeI ACTAGT 2 cut(s) 242, 605
Sse9I AATT 9 cut(s) 25, 54, 348, 387, 620, 748, 754, 787, 898
SsiI CCGC 2 cut(s) 156, 380
SspMI CTAG 3 cut(s) 231, 243, 606
SstI GAGCTC 2 cut(s) 294, 425
TaaI ACNGT 2 cut(s) 272, 784
TaiI ACGT 3 cut(s) 171, 314, 693
TaqI TCGA 6 cut(s) 29, 150, 316, 582, 729, 736
TasI AATT 9 cut(s) 25, 54, 348, 387, 620, 748, 754, 787, 898
TatI WGTACW 1 cut(s) 245
TauI GCSGC 2 cut(s) 159, 383
TfiI GAWTC 2 cut(s) 579, 845
Tru1I TTAA 3 cut(s) 138, 668, 834
Tru9I TTAA 3 cut(s) 138, 668, 834
TscAI CASTG 4 cut(s) 40, 277, 604, 789
TseFI GTSAC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 35
TspDTI ATGAA 3 cut(s) 17, 606, 650
TspRI CASTG 4 cut(s) 40, 277, 604, 789
Tth111I GACNNNGTC 1 cut(s) 689
Vha464I CTTAAG 1 cut(s) 667
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 787
XceI RCATGY 2 cut(s) 20, 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 3 cut(s) 231, 243, 606
ZraI GACGTC 1 cut(s) 691
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.