Rmu_sc0003266.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003266.1
OG0016355
Physical Location & Seq
Reverse (-)
27130 .. 28668
1539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003266.1_g000005.1.cds

Sequence Viewer

Length: 1290 bp
atgaagaaccatatgcatgtatgtaattcgagcagtgacgatgagaagattataattagtgatgagtcgtcaggatcagtatcatcaatagaaccttactgctggtggagatcggcggcaaagtacgatgagtatgttaagttcaagttcgagggcggcctgccagacgtgtcaaggctgacaacaaggatgagagtgttaaaagagttggagagattagctttggttgctagtggctctactagtactcctgaatcccattatcattacagtgaaggtggtgtgaatgagctcaggcacaagctcctcacgtatcgatcaggagatttctggatgcctattggaggaattagtaaggagaagatggacattccaccactggccacaattctcttggtcggcttctctgcttccggcaagagctcgcttgtcaatctaatgtatagtgttttgggtcgctctggactcataccttttgctcaaacatcctcctcaggaagtggtagaaccaagcttttgaaagagcacaatgtggtgaggtctttgcgtagtgggttttgcgtgtacgactcagggggattcgattacaatgaaatcagtgaaactagtgtaggtgaagaattgtcaagttggatgaatgatggggttcaccagaaccaagaatgcttaagatcgggagatctggacgacgtccctcatcatgatgttgcaggtgatgataggcatgtcgattttcgaactatgtcaaattataattggtcttcaaagtttgtgaggaggacagtgaattctgtcatggtggtggctaacatggcagagatctacaagtcatttaaagctggtgattctaagccaatggaggccacaagacagcttttctgctcaagtgcattccgaaattgcaatgatgagaagcctatcttgatcttgacacatggtgacatgttatcaactgaagaaaggattgaagggcggcttaaaatatgtgaatgtgtaggtgtatcagagacgaccggagtatatgacatcgtgtgtcttaccgagtatggatttctcgcagaagaatcagacccggtttcagcttatgctctcacagaagcagtatatagggcattggtcatatcggacaggacccacttaccgaagaaaacacatcaggactgggcattgcttgtattatcctggattatgtgcttcattgcttctctctttgctctcattgctgagatttgcttcaaactcggaggaggtggacgtcagagggatcggcacaagctactcatgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MMR_HSR1

Protein Analysis

429

Amino Acids

47.98

Weight (kDa)

6.08

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016355)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g39660 FvH4_5g39660
malus_domestica MD03G1298300.v1.1
prunus_persica Prupe.8G269000_v2.0.a1
pyrus_communis pycom03g23620
rosa_chinensis RchiOBHm_Chr7g0241971
rosa_laevigata RLG00000000525
rosa_multiflora Rmu_sc0003266.1_g000005
rosa_roxburghii Rroxscaffold_3G00218420
rosa_rugosa Rorug07G0349400
rosa_samantha Rh7AG503400 Rh7BG474600 Rh7CG520200 Rh7DG489000
rosa_wichuraiana Rw7G042570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 53, 753
AarI CACCTGC 1 cut(s) 701
AatII GACGTC 2 cut(s) 693, 1258
Acc36I ACCTGC 1 cut(s) 701
AciI CCGC 3 cut(s) 116, 156, 973
AclWI GGATC 2 cut(s) 82, 1272
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 787
AcuI CTGAAG 1 cut(s) 975
AcyI GRCGYC 2 cut(s) 690, 1255
AdeI CACNNNGTG 2 cut(s) 532, 938
AfaI GTAC 3 cut(s) 125, 247, 566
AfiI CCNNNNNNNGG 1 cut(s) 344
AflII CTTAAG 1 cut(s) 667
AflIII ACRYGT 2 cut(s) 168, 942
AgsI TTSAA 5 cut(s) 145, 520, 765, 968, 1237
AhlI ACTAGT 2 cut(s) 242, 605
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 1181
AluBI AGCT 9 cut(s) 221, 292, 304, 423, 514, 839, 874, 1082, 1276
AluI AGCT 9 cut(s) 221, 292, 304, 423, 514, 839, 874, 1082, 1276
Alw21I GWGCWC 3 cut(s) 294, 425, 528
Alw26I GTCTC 1 cut(s) 1001
AlwI GGATC 2 cut(s) 82, 1272
AoxI GGCC 3 cut(s) 157, 381, 861
ApoI RAATTY 1 cut(s) 787
AspS9I GGNCC 1 cut(s) 1131
AsuC2I CCSGG 1 cut(s) 1073
AsuHPI GGTGA 6 cut(s) 547, 626, 641, 725, 854, 950
AsuII TTCGAA 1 cut(s) 736
AvaII GGWCC 1 cut(s) 1131
AxyI CCTNAGG 1 cut(s) 493
BalI TGGCCA 1 cut(s) 383
BanII GRGCYC 2 cut(s) 294, 425
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 3 cut(s) 294, 425, 528
BccI CCATC 2 cut(s) 358, 635
BciT130I CCWGG 1 cut(s) 1183
BcnI CCSGG 1 cut(s) 1073
BcoDI GTCTC 1 cut(s) 1001
BcuI ACTAGT 2 cut(s) 242, 605
BfaI CTAG 3 cut(s) 231, 243, 606
BfrI CTTAAG 1 cut(s) 667
BfuAI ACCTGC 1 cut(s) 701
BglII AGATCT 2 cut(s) 679, 819
BisI GCNGC 3 cut(s) 117, 157, 974
BlsI GCNGC 3 cut(s) 118, 158, 975
BmcAI AGTACT 1 cut(s) 247
Bme1390I CCNGG 2 cut(s) 1073, 1183
Bme18I GGWCC 1 cut(s) 1131
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 1131
BmiI GGNNCC 1 cut(s) 1133
BmrFI CCNGG 2 cut(s) 1073, 1183
BmrI ACTGGG 1 cut(s) 1171
BmsI GCATC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 1171
BpiI GAAGAC 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 293
Bpu14I TTCGAA 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 868
BpuMI CCSGG 1 cut(s) 1073
Bsa29I ATCGAT 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 312
BsaBI GATNNNNATC 1 cut(s) 79
BsaHI GRCGYC 2 cut(s) 690, 1255
BsaWI WCCGGW 1 cut(s) 1013
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 384, 1166
Bse21I CCTNAGG 1 cut(s) 493
Bse3DI GCAATG 4 cut(s) 910, 1166, 1197, 1218
Bse8I GATNNNNATC 1 cut(s) 79
BseBI CCWGG 1 cut(s) 1183
BseCI ATCGAT 1 cut(s) 316
BseGI GGATG 4 cut(s) 195, 339, 485, 639
BseJI GATNNNNATC 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 4 cut(s) 910, 1166, 1197, 1218
BseMII CTCAG 4 cut(s) 307, 507, 585, 1215
BseNI ACTGG 2 cut(s) 384, 1166
BseRI GAGGAG 4 cut(s) 296, 481, 790, 1260
Bsh1285I CGRYCG 1 cut(s) 1014
BshFI GGCC 3 cut(s) 159, 383, 863
BshVI ATCGAT 1 cut(s) 316
BsiEI CGRYCG 1 cut(s) 1014
BsiHKAI GWGCWC 3 cut(s) 294, 425, 528
BsiSI CCGG 3 cut(s) 414, 1014, 1073
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 1001
BsmBI CGTCTC 1 cut(s) 1001
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 2 cut(s) 668, 890
BsnI GGCC 3 cut(s) 159, 383, 863
Bsp119I TTCGAA 1 cut(s) 736
Bsp1286I GDGCHC 3 cut(s) 294, 425, 528
Bsp143I GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
BspACI CCGC 3 cut(s) 116, 156, 973
BspANI GGCC 3 cut(s) 159, 383, 863
BspCNI CTCAG 4 cut(s) 306, 506, 584, 1216
BspDI ATCGAT 1 cut(s) 316
BspHI TCATGA 2 cut(s) 700, 1281
BspLI GGNNCC 1 cut(s) 1133
BspMI ACCTGC 1 cut(s) 701
BspPI GGATC 2 cut(s) 82, 1272
BspT104I TTCGAA 1 cut(s) 736
BspTI CTTAAG 1 cut(s) 667
BsrDI GCAATG 4 cut(s) 910, 1166, 1197, 1218
BsrI ACTGG 2 cut(s) 384, 1166
BssMI GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
BssNI GRCGYC 2 cut(s) 690, 1255
Bst2UI CCWGG 1 cut(s) 1183
Bst4CI ACNGT 2 cut(s) 272, 784
BstACI GRCGYC 2 cut(s) 690, 1255
BstAFI CTTAAG 1 cut(s) 667
BstBAI YACGTR 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 736
BstC8I GCNNGC 2 cut(s) 161, 425
BstDEI CTNAG 5 cut(s) 293, 493, 571, 849, 1224
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 4 cut(s) 195, 339, 485, 639
BstKTI GATC 8 cut(s) 77, 113, 320, 674, 682, 822, 927, 1267
BstMAI GTCTC 1 cut(s) 1001
BstMBI GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
BstMCI CGRYCG 1 cut(s) 1014
BstMWI GCNNNNNNNGC 3 cut(s) 227, 812, 1220
BstNI CCWGG 1 cut(s) 1183
BstNSI RCATGY 3 cut(s) 20, 728, 946
BstSCI CCNGG 2 cut(s) 1071, 1181
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 2 cut(s) 679, 819
BstYI RGATCY 2 cut(s) 679, 819
Bsu15I ATCGAT 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 493
BsuRI GGCC 3 cut(s) 159, 383, 863
BsuTUI ATCGAT 1 cut(s) 316
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 195, 339, 485, 639
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 5 cut(s) 40, 277, 377, 604, 789
BveI ACCTGC 1 cut(s) 701
Cac8I GCNNGC 2 cut(s) 161, 425
CciI TCATGA 2 cut(s) 700, 1281
Cfr13I GGNCC 1 cut(s) 1131
ClaI ATCGAT 1 cut(s) 316
Csp6I GTAC 3 cut(s) 124, 246, 565
CviAII CATG 8 cut(s) 17, 701, 725, 796, 811, 935, 943, 1282
CviQI GTAC 3 cut(s) 124, 246, 565
DdeI CTNAG 5 cut(s) 293, 493, 571, 849, 1224
DpnI GATC 8 cut(s) 76, 112, 319, 673, 681, 821, 926, 1266
DpnII GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
DraI TTTAAA 1 cut(s) 835
DraIII CACNNNGTG 2 cut(s) 532, 938
EaeI YGGCCR 1 cut(s) 381
Ecl136II GAGCTC 2 cut(s) 292, 423
Eco24I GRGCYC 2 cut(s) 294, 425
Eco47I GGWCC 1 cut(s) 1131
Eco53kI GAGCTC 2 cut(s) 292, 423
Eco57I CTGAAG 1 cut(s) 975
Eco81I CCTNAGG 1 cut(s) 493
EcoICRI GAGCTC 2 cut(s) 292, 423
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoO109I RGGNCCY 1 cut(s) 1131
EcoRI GAATTC 1 cut(s) 787
EcoRII CCWGG 1 cut(s) 1181
EcoT22I ATGCAT 1 cut(s) 18
EcoT38I GRGCYC 2 cut(s) 294, 425
Esp3I CGTCTC 1 cut(s) 1001
FaeI CATG 8 cut(s) 20, 704, 728, 799, 814, 938, 946, 1285
FalI AAGNNNNNCTT 4 cut(s) 905, 937, 960, 992
FaqI GGGAC 1 cut(s) 677
FatI CATG 8 cut(s) 16, 700, 724, 795, 810, 934, 942, 1281
FauNDI CATATG 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 117, 157, 974
FokI GGATG 4 cut(s) 202, 346, 472, 646
FriOI GRGCYC 2 cut(s) 294, 425
Fsp4HI GCNGC 3 cut(s) 117, 157, 974
FspBI CTAG 3 cut(s) 231, 243, 606
GluI GCNGC 3 cut(s) 117, 157, 974
HaeIII GGCC 3 cut(s) 159, 383, 863
HapII CCGG 3 cut(s) 414, 1014, 1073
Hin1I GRCGYC 2 cut(s) 690, 1255
Hin1II CATG 8 cut(s) 20, 704, 728, 799, 814, 938, 946, 1285
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 7 cut(s) 65, 254, 465, 569, 579, 845, 1064
HpaII CCGG 3 cut(s) 414, 1014, 1073
HphI GGTGA 6 cut(s) 547, 626, 641, 725, 854, 950
Hpy166II GTNNAC 3 cut(s) 565, 649, 1253
Hpy188I TCNGA 6 cut(s) 896, 1006, 1069, 1126, 1244, 1260
Hpy8I GTNNAC 3 cut(s) 565, 649, 1253
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 2 cut(s) 269, 962
HpyCH4III ACNGT 2 cut(s) 272, 784
HpyCH4IV ACGT 4 cut(s) 168, 311, 690, 1255
HpyCH4V TGCA 4 cut(s) 16, 710, 890, 903
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 812, 1220
HpyF3I CTNAG 5 cut(s) 293, 493, 571, 849, 1224
HpySE526I ACGT 4 cut(s) 168, 311, 690, 1255
Hsp92I GRCGYC 2 cut(s) 690, 1255
Hsp92II CATG 8 cut(s) 20, 704, 728, 799, 814, 938, 946, 1285
Kzo9I GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
LmnI GCTCC 1 cut(s) 309
LweI GCATC 1 cut(s) 324
MaeI CTAG 3 cut(s) 231, 243, 606
MaeII ACGT 4 cut(s) 168, 311, 690, 1255
MaeIII GTNAC 2 cut(s) 35, 938
MalI GATC 8 cut(s) 76, 112, 319, 673, 681, 821, 926, 1266
MboI GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
MboII GAAGA 8 cut(s) 16, 58, 373, 629, 753, 968, 1073, 1156
MflI RGATCY 2 cut(s) 679, 819
MhlI GDGCHC 3 cut(s) 294, 425, 528
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 9 cut(s) 25, 54, 348, 387, 620, 748, 754, 787, 898
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 3 cut(s) 74, 459, 563
MmeI TCCRAC 2 cut(s) 189, 611
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 18
MscI TGGCCA 1 cut(s) 383
MseI TTAA 5 cut(s) 138, 200, 668, 834, 978
MslI CAYNNNNRTG 4 cut(s) 15, 270, 702, 800
Msp20I TGGCCA 1 cut(s) 383
MspCI CTTAAG 1 cut(s) 667
MspI CCGG 3 cut(s) 414, 1014, 1073
MspR9I CCNGG 2 cut(s) 1073, 1183
Mva1269I GAATGC 2 cut(s) 668, 890
MvaI CCWGG 1 cut(s) 1183
MwoI GCNNNNNNNGC 3 cut(s) 227, 812, 1220
NciI CCSGG 1 cut(s) 1073
NdeI CATATG 1 cut(s) 12
NdeII GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
NlaIII CATG 8 cut(s) 20, 704, 728, 799, 814, 938, 946, 1285
NlaIV GGNNCC 1 cut(s) 1133
NmuCI GTSAC 2 cut(s) 35, 938
NsiI ATGCAT 1 cut(s) 18
NspI RCATGY 3 cut(s) 20, 728, 946
NspV TTCGAA 1 cut(s) 736
PagI TCATGA 2 cut(s) 700, 1281
PaqCI CACCTGC 1 cut(s) 701
PciI ACATGT 1 cut(s) 942
PctI GAATGC 2 cut(s) 668, 890
PfeI GAWTC 4 cut(s) 254, 579, 845, 1064
PflFI GACNNNGTC 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 1181
PkrI GCNGC 3 cut(s) 118, 158, 975
PleI GAGTC 3 cut(s) 73, 459, 563
PpsI GAGTC 3 cut(s) 73, 459, 563
Ppu21I YACGTR 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 1131
PscI ACATGT 1 cut(s) 942
PsiI TTATAA 2 cut(s) 53, 753
Psp124BI GAGCTC 2 cut(s) 294, 425
Psp5II RGGWCCY 1 cut(s) 1131
Psp6I CCWGG 1 cut(s) 1181
PspGI CCWGG 1 cut(s) 1181
PspN4I GGNNCC 1 cut(s) 1133
PspPI GGNCC 1 cut(s) 1131
PspPPI RGGWCCY 1 cut(s) 1131
PsrI GAACNNNNNNTAC 2 cut(s) 125, 157
PsuI RGATCY 2 cut(s) 679, 819
PsyI GACNNNGTC 1 cut(s) 689
RsaI GTAC 3 cut(s) 125, 247, 566
RsaNI GTAC 3 cut(s) 124, 246, 565
RseI CAYNNNNRTG 4 cut(s) 15, 270, 702, 800
SacI GAGCTC 2 cut(s) 294, 425
SaqAI TTAA 5 cut(s) 138, 200, 668, 834, 978
SatI GCNGC 3 cut(s) 117, 157, 974
Sau3AI GATC 8 cut(s) 74, 110, 317, 671, 679, 819, 924, 1264
Sau96I GGNCC 1 cut(s) 1131
ScaI AGTACT 1 cut(s) 247
SchI GAGTC 3 cut(s) 74, 459, 563
ScrFI CCNGG 2 cut(s) 1073, 1183
SduI GDGCHC 3 cut(s) 294, 425, 528
SfaNI GCATC 1 cut(s) 324
SfuI TTCGAA 1 cut(s) 736
SinI GGWCC 1 cut(s) 1131
SmiMI CAYNNNNRTG 4 cut(s) 15, 270, 702, 800
SmlI CTYRAG 2 cut(s) 667, 883
SmoI CTYRAG 2 cut(s) 667, 883
SpeI ACTAGT 2 cut(s) 242, 605
Sse9I AATT 9 cut(s) 25, 54, 348, 387, 620, 748, 754, 787, 898
SsiI CCGC 3 cut(s) 116, 156, 973
SspMI CTAG 3 cut(s) 231, 243, 606
SstI GAGCTC 2 cut(s) 294, 425
StyD4I CCNGG 2 cut(s) 1071, 1181
TaaI ACNGT 2 cut(s) 272, 784
TaiI ACGT 4 cut(s) 171, 314, 693, 1258
TaqI TCGA 6 cut(s) 29, 150, 316, 582, 729, 736
TasI AATT 9 cut(s) 25, 54, 348, 387, 620, 748, 754, 787, 898
TatI WGTACW 1 cut(s) 245
TauI GCSGC 3 cut(s) 119, 159, 976
TfiI GAWTC 4 cut(s) 254, 579, 845, 1064
Tru1I TTAA 5 cut(s) 138, 200, 668, 834, 978
Tru9I TTAA 5 cut(s) 138, 200, 668, 834, 978
TscAI CASTG 5 cut(s) 40, 277, 384, 604, 789
TseFI GTSAC 2 cut(s) 35, 938
Tsp45I GTSAC 2 cut(s) 35, 938
TspDTI ATGAA 4 cut(s) 17, 606, 650, 1186
TspRI CASTG 5 cut(s) 40, 277, 384, 604, 789
Tth111I GACNNNGTC 1 cut(s) 689
Vha464I CTTAAG 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 1131
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 787
XceI RCATGY 3 cut(s) 20, 728, 946
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 3 cut(s) 231, 243, 606
ZraI GACGTC 2 cut(s) 691, 1256
ZrmI AGTACT 1 cut(s) 247
Zsp2I ATGCAT 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.