FvH4_6g00070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015372
Physical Location & Seq
Forward (+)
68655 .. 69236
582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00070.t1

Sequence Viewer

Length: 582 bp
ATGGGTATAGGTTTGAACTCGAACCCATCAGTGGCAGGGGCGTCTCCATCCCACTACCACACCCACAAGGTGTTCCTTCTGTGCAACTACATCCTCTTGGGTGCAGCCTCCAGTTGCATCTTCCTCACCCTCTCCCTGCGCCTCCTCCCCTCCGTCTGCGGCTTCTTCGTCATCCTCCTCCACTTCTTCACCATTGTCGGGGCCGTCTCCGGATGCGCCGCAGCCTCCGCAGGGACCGGAAAATGGTACGGGGCCCACATGGTGGCCACAGTACTCACTGCCATATTCCAAGGCTCAGTGGCTGTGCTGATCTTCACCAGAACCGGCGACTTTCTTGGGGAGCTCAAGTCCTATGTGAGGGAAGAGGATGCCTCTGTCATTCTCAAATTGGGGGGTGGCCTCAGCATTTTGATCTTCTGCTTGGAGTGGGTGGTCTTGACCCTTGCCTTTTTCCTGAAGTACTATGCCTCTGTTGAAGGCGACCATATTCAGCTGGGCGGGAATTCCAGAGCTGCTATGAGGAGTTCCAAGGTGCAACAAGAGGAGGATCTCAAGGATTGGCCATGGCCCTTCCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

20.84

Weight (kDa)

6.99

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16250
fragaria_vesca FvH4_6g00070
malus_domestica MD00G1017200.v1.1 MD12G1261500.v1.1
prunus_persica Prupe.6G365300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0447401
rosa_laevigata RLG00000026002
rosa_multiflora Rmu_ssc0000473.1_g000017 Rmu_ssc0000473.1_g000019
rosa_roxburghii Rroxscaffold_6G00425600
rosa_rugosa Rorug02G0601200
rosa_samantha Rh3AG001300 Rh3BG001000 Rh3CG001100 Rh3DG001200
rosa_wichuraiana Rw3G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 4 cut(s) 159, 219, 228, 498
AclWI GGATC 1 cut(s) 555
AcoI YGGCCR 2 cut(s) 264, 560
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 476
AcyI GRCGYC 1 cut(s) 41
AdeI CACNNNGTG 2 cut(s) 70, 262
AfaI GTAC 3 cut(s) 248, 273, 461
AfiI CCNNNNNNNGG 6 cut(s) 31, 198, 231, 243, 262, 357
AgsI TTSAA 2 cut(s) 16, 476
AluBI AGCT 3 cut(s) 343, 493, 512
AluI AGCT 3 cut(s) 343, 493, 512
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 48, 211
AlwI GGATC 1 cut(s) 555
AlwNI CAGNNNCTG 1 cut(s) 302
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 6 cut(s) 201, 252, 264, 397, 560, 566
ApaI GGGCCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 104, 221, 512
ApoI RAATTY 1 cut(s) 502
AspLEI GCGC 2 cut(s) 141, 218
AspS9I GGNCC 5 cut(s) 201, 234, 252, 253, 567
AsuHPI GGTGA 3 cut(s) 118, 181, 307
AvaII GGWCC 1 cut(s) 234
BaeGI GKGCMC 1 cut(s) 256
BalI TGGCCA 2 cut(s) 266, 562
BanII GRGCYC 2 cut(s) 256, 345
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 401
BbvI GCAGC 3 cut(s) 116, 233, 499
BccI CCATC 2 cut(s) 34, 55
BceAI ACGGC 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 48, 211
BisI GCNGC 5 cut(s) 105, 160, 219, 222, 513
BlsI GCNGC 5 cut(s) 106, 161, 220, 223, 514
BmcAI AGTACT 2 cut(s) 273, 461
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 5 cut(s) 201, 234, 252, 253, 567
BmiI GGNNCC 4 cut(s) 202, 235, 253, 254
BmsI GCATC 3 cut(s) 126, 203, 358
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 401
BpuEI CTTGAG 2 cut(s) 329, 536
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 289, 528, 563
BsaWI WCCGGW 2 cut(s) 209, 236
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 198, 231, 243, 262, 357
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 111
BseAI TCCGGA 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 289, 528, 563
BseGI GGATG 5 cut(s) 47, 90, 171, 218, 373
BseLI CCNNNNNNNGG 6 cut(s) 31, 198, 231, 243, 262, 357
BseMII CTCAG 2 cut(s) 309, 415
BseNI ACTGG 1 cut(s) 111
BseRI GAGGAG 4 cut(s) 134, 167, 535, 557
BseSI GKGCMC 1 cut(s) 256
BseXI GCAGC 3 cut(s) 116, 233, 499
BseYI CCCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 6 cut(s) 203, 254, 266, 399, 562, 568
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 3 cut(s) 210, 237, 324
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 6 cut(s) 31, 198, 231, 243, 262, 357
BsmAI GTCTC 2 cut(s) 48, 211
BsmBI CGTCTC 2 cut(s) 48, 211
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 6 cut(s) 203, 254, 266, 399, 562, 568
Bsp120I GGGCCC 1 cut(s) 252
Bsp1286I GDGCHC 2 cut(s) 256, 345
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 3 cut(s) 309, 411, 547
Bsp19I CCATGG 1 cut(s) 563
BspACI CCGC 4 cut(s) 159, 219, 228, 498
BspANI GGCC 6 cut(s) 203, 254, 266, 399, 562, 568
BspCNI CTCAG 2 cut(s) 308, 414
BspEI TCCGGA 1 cut(s) 209
BspLI GGNNCC 4 cut(s) 202, 235, 253, 254
BspPI GGATC 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 289, 528, 563
BssMI GATC 3 cut(s) 309, 411, 547
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 3 cut(s) 289, 528, 563
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 295, 401
BstDSI CCRYGG 1 cut(s) 563
BstENI CCTNNNNNAGG 1 cut(s) 355
BstF5I GGATG 5 cut(s) 47, 90, 171, 218, 373
BstHHI GCGC 2 cut(s) 141, 218
BstKTI GATC 3 cut(s) 312, 414, 550
BstMAI GTCTC 2 cut(s) 48, 211
BstMBI GATC 3 cut(s) 309, 411, 547
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSLI GKGCMC 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 116, 233, 499
BstX2I RGATCY 1 cut(s) 547
BstYI RGATCY 1 cut(s) 547
BsuRI GGCC 6 cut(s) 203, 254, 266, 399, 562, 568
BtgI CCRYGG 1 cut(s) 563
BtsCI GGATG 5 cut(s) 47, 90, 171, 218, 373
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 3 cut(s) 36, 276, 303
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 2 cut(s) 141, 218
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 5 cut(s) 201, 234, 252, 253, 567
CseI GACGC 1 cut(s) 30
Csp6I GTAC 3 cut(s) 247, 272, 460
CviAII CATG 2 cut(s) 259, 564
CviQI GTAC 3 cut(s) 247, 272, 460
DdeI CTNAG 2 cut(s) 295, 401
DpnI GATC 3 cut(s) 311, 413, 549
DpnII GATC 3 cut(s) 309, 411, 547
DraIII CACNNNGTG 2 cut(s) 70, 262
EaeI YGGCCR 2 cut(s) 264, 560
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 3 cut(s) 289, 528, 563
Eco24I GRGCYC 2 cut(s) 256, 345
Eco47I GGWCC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 343
EcoNI CCTNNNNNAGG 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 502
EcoT14I CCWWGG 3 cut(s) 289, 528, 563
EcoT38I GRGCYC 2 cut(s) 256, 345
ErhI CCWWGG 3 cut(s) 289, 528, 563
Esp3I CGTCTC 2 cut(s) 48, 211
FaeI CATG 2 cut(s) 262, 567
FaiI YATR 8 cut(s) 8, 260, 284, 354, 465, 486, 518, 565
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 258, 563
FauI CCCGC 1 cut(s) 491
Fnu4HI GCNGC 5 cut(s) 105, 160, 219, 222, 513
FokI GGATG 5 cut(s) 34, 77, 158, 225, 380
FriOI GRGCYC 2 cut(s) 256, 345
Fsp4HI GCNGC 5 cut(s) 105, 160, 219, 222, 513
GlaI GCGC 2 cut(s) 140, 217
GluI GCNGC 5 cut(s) 105, 160, 219, 222, 513
GsaI CCCAGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 6 cut(s) 203, 254, 266, 399, 562, 568
HapII CCGG 3 cut(s) 210, 237, 324
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 141, 218
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 2 cut(s) 262, 567
Hin6I GCGC 2 cut(s) 139, 216
HinP1I GCGC 2 cut(s) 139, 216
HpaII CCGG 3 cut(s) 210, 237, 324
HphI GGTGA 3 cut(s) 118, 181, 307
Hpy188III TCNNGA 4 cut(s) 210, 436, 454, 507
HpyAV CCTTC 3 cut(s) 86, 470, 580
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 84, 104, 117, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 2 cut(s) 295, 401
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 2 cut(s) 262, 567
HspAI GCGC 2 cut(s) 139, 216
Kpn2I TCCGGA 1 cut(s) 209
Kzo9I GATC 3 cut(s) 309, 411, 547
LmnI GCTCC 1 cut(s) 340
Lsp1109I GCAGC 3 cut(s) 116, 233, 499
LweI GCATC 3 cut(s) 126, 203, 358
MalI GATC 3 cut(s) 311, 413, 549
MboI GATC 3 cut(s) 309, 411, 547
MboII GAAGA 6 cut(s) 112, 157, 178, 304, 374, 406
MflI RGATCY 1 cut(s) 547
MhlI GDGCHC 2 cut(s) 256, 345
MlsI TGGCCA 2 cut(s) 266, 562
MluCI AATT 2 cut(s) 386, 502
MluNI TGGCCA 2 cut(s) 266, 562
Mox20I TGGCCA 2 cut(s) 266, 562
MroI TCCGGA 1 cut(s) 209
MscI TGGCCA 2 cut(s) 266, 562
Msp20I TGGCCA 2 cut(s) 266, 562
MspA1I CMGCKG 1 cut(s) 493
MspI CCGG 3 cut(s) 210, 237, 324
MwoI GCNNNNNNNGC 1 cut(s) 227
NcoI CCATGG 1 cut(s) 563
NdeII GATC 3 cut(s) 309, 411, 547
NlaIII CATG 2 cut(s) 262, 567
NlaIV GGNNCC 4 cut(s) 202, 235, 253, 254
PflMI CCANNNNNTGG 1 cut(s) 262
PkrI GCNGC 5 cut(s) 106, 161, 220, 223, 514
Psp124BI GAGCTC 1 cut(s) 345
PspFI CCCAGC 1 cut(s) 493
PspN4I GGNNCC 4 cut(s) 202, 235, 253, 254
PspOMI GGGCCC 1 cut(s) 252
PspPI GGNCC 5 cut(s) 201, 234, 252, 253, 567
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 547
PvuII CAGCTG 1 cut(s) 493
RsaI GTAC 3 cut(s) 248, 273, 461
RsaNI GTAC 3 cut(s) 247, 272, 460
SacI GAGCTC 1 cut(s) 345
SatI GCNGC 5 cut(s) 105, 160, 219, 222, 513
Sau3AI GATC 3 cut(s) 309, 411, 547
Sau96I GGNCC 5 cut(s) 201, 234, 252, 253, 567
ScaI AGTACT 2 cut(s) 273, 461
SduI GDGCHC 2 cut(s) 256, 345
SetI ASST 6 cut(s) 13, 72, 345, 495, 514, 534
SfaNI GCATC 3 cut(s) 126, 203, 358
SinI GGWCC 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 344, 551
SmoI CTYRAG 2 cut(s) 344, 551
Sse9I AATT 2 cut(s) 386, 502
SsiI CCGC 4 cut(s) 159, 219, 228, 498
SstI GAGCTC 1 cut(s) 345
StyI CCWWGG 3 cut(s) 289, 528, 563
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 386, 502
TatI WGTACW 2 cut(s) 271, 459
TauI GCSGC 2 cut(s) 162, 221
TscAI CASTG 3 cut(s) 36, 283, 303
TseI GCWGC 3 cut(s) 104, 221, 512
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 3 cut(s) 36, 283, 303
Van91I CCANNNNNTGG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 234
XagI CCTNNNNNAGG 1 cut(s) 355
XapI RAATTY 1 cut(s) 502
ZrmI AGTACT 2 cut(s) 273, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.