Rorug02G0601200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0015372
Physical Location & Seq
Forward (+)
72022703 .. 72027254
4552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0601200.1

Sequence Viewer

Length: 1047 bp
ATGGCTTCAGCCCCTATCTCTCTCTCTCCCCTTGCCGGGAGAACCGTCGATTACTGGCCTTGCTCAGAAAGCGGAGGATATGACTCCGATGATTCGGTTAAGGACCTGAGTTACAACACTCTTGAAGAAACCCATGCCCTGTCCTTGAAGCTCTCTATCAACAGTAATTCCAAGGCCAGACAAGGGATCTCCGATTACACAACCACTTCCCAAACCAGTTCAAATTCTGTTGACCGAAATAGTAAGGAGCTTTTATCCCATTCAAGTGATGATTTCAATGATCAGGTAAAAGAACAGCTTGAAAGATCCACACTGAGACTTGAAGAATTGAAAAACGAGCGCCAACAACTAATGGACTCCATGCTAATACGTGAGCTGCAGTCCTATGCAGATGAGGACTATAAAATCAGAGTTTGTGTCTGCAGATTATGGCAAGGAAAGAGGATAAACCCAGAACAAAATGATGGACTGCATTGCGTATTGGTTGATGAAAGGGGCGATGCAATTCATGGCATAACAAGTGAAGCAAATTATTCATCAGTCTCTGGAAAACTGAAACAAGGAGAGATATACCTGATCTCCGATTTCTATGTACAAGATAGTCAAGACGATTATAAAGTCATGGACAACTCAATCCAAGCTCATTTCAATGGGAAAACAAAATTCAAGCTCTTGCACAACAGCTTTCCACAGATTCCACAACATCGATTCTATCTACTAGATTACAATCAGTTGAAAAACCGCATTGACAAAACTAAACTTCTCACAGAAATGCCTGCACCATCAAACACCAGTCATACTTGCATTTTCATCAATCCAGAAATCCCACAGGCAGAACCCTACAAAATCGATTATAGAATCCATGCCACCATTGAAGATCCAAACAGTGAGGCCACAGTCAAGCTTAGAGGAAAAGCAGCTGAACAATTGTTTGGAATAACTTGCAAAGAACTCATAGACAAGTACCCTTATGCTCCACAGGAAACATTACCACAGGAAATATTGCAAACACGGGCAGATCCACATTTTCCAAATCCAAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.68

Weight (kDa)

5.27

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF223 PF02721 133 - 222 1.2e-08 Domain of unknown function DUF223
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16250
fragaria_vesca FvH4_6g00070
malus_domestica MD00G1017200.v1.1 MD12G1261500.v1.1
prunus_persica Prupe.6G365300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0447401
rosa_laevigata RLG00000026002
rosa_multiflora Rmu_ssc0000473.1_g000017 Rmu_ssc0000473.1_g000019
rosa_roxburghii Rroxscaffold_6G00425600
rosa_rugosa Rorug02G0601200
rosa_samantha Rh3AG001300 Rh3BG001000 Rh3CG001100 Rh3DG001200
rosa_wichuraiana Rw3G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
AciI CCGC 2 cut(s) 72, 742
AclWI GGATC 4 cut(s) 194, 300, 872, 1013
AcsI RAATTY 2 cut(s) 223, 662
AfaI GTAC 2 cut(s) 594, 965
AfiI CCNNNNNNNGG 3 cut(s) 35, 36, 183
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AluBI AGCT 9 cut(s) 151, 250, 298, 376, 641, 670, 684, 904, 920
AluI AGCT 9 cut(s) 151, 250, 298, 376, 641, 670, 684, 904, 920
Alw26I GTCTC 2 cut(s) 310, 547
AlwI GGATC 4 cut(s) 194, 300, 872, 1013
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 3 cut(s) 56, 174, 891
ApeKI GCWGC 2 cut(s) 376, 917
ApoI RAATTY 2 cut(s) 223, 662
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 103
AsuC2I CCSGG 1 cut(s) 37
AvaII GGWCC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 363, 929
BccI CCATC 2 cut(s) 458, 790
BclI TGATCA 1 cut(s) 280
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 310, 547
BfaI CTAG 1 cut(s) 719
BfmI CTRYAG 2 cut(s) 377, 421
BfoI RGCGCY 1 cut(s) 343
BisI GCNGC 2 cut(s) 377, 918
BlsI GCNGC 2 cut(s) 378, 919
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 490
BpuMI CCSGG 1 cut(s) 37
Bsa29I ATCGAT 2 cut(s) 706, 849
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 726
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 563, 593
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 36, 183
Bse1I ACTGG 3 cut(s) 59, 216, 792
Bse3DI GCAATG 1 cut(s) 472
Bse8I GATNNNNATC 1 cut(s) 726
BseCI ATCGAT 2 cut(s) 706, 849
BseDI CCNNGG 1 cut(s) 171
BseJI GATNNNNATC 1 cut(s) 726
BseLI CCNNNNNNNGG 3 cut(s) 35, 36, 183
BseMI GCAATG 1 cut(s) 472
BseMII CTCAG 3 cut(s) 78, 98, 305
BseNI ACTGG 3 cut(s) 59, 216, 792
BseXI GCAGC 2 cut(s) 363, 929
BsgI GTGCAG 1 cut(s) 762
BshFI GGCC 3 cut(s) 58, 176, 893
BshVI ATCGAT 2 cut(s) 706, 849
BsiSI CCGG 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 35, 36, 183
BsmAI GTCTC 2 cut(s) 310, 547
BsnI GGCC 3 cut(s) 58, 176, 893
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
BspACI CCGC 2 cut(s) 72, 742
BspANI GGCC 3 cut(s) 58, 176, 893
BspCNI CTCAG 3 cut(s) 77, 99, 306
BspDI ATCGAT 2 cut(s) 706, 849
BspMAI CTGCAG 2 cut(s) 381, 425
BspPI GGATC 4 cut(s) 194, 300, 872, 1013
BsrDI GCAATG 1 cut(s) 472
BsrGI TGTACA 1 cut(s) 592
BsrI ACTGG 3 cut(s) 59, 216, 792
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
BssT1I CCWWGG 1 cut(s) 171
Bst4CI ACNGT 4 cut(s) 46, 164, 887, 898
BstAUI TGTACA 1 cut(s) 592
BstBAI YACGTR 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 4 cut(s) 64, 107, 314, 905
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 6 cut(s) 189, 283, 308, 579, 880, 1021
BstMAI GTCTC 2 cut(s) 310, 547
BstMBI GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 35
BstSFI CTRYAG 2 cut(s) 377, 421
BstV1I GCAGC 2 cut(s) 363, 929
BstX2I RGATCY 4 cut(s) 186, 305, 877, 1018
BstYI RGATCY 4 cut(s) 186, 305, 877, 1018
Bsu15I ATCGAT 2 cut(s) 706, 849
BsuRI GGCC 3 cut(s) 58, 176, 893
BsuTUI ATCGAT 2 cut(s) 706, 849
BtgZI GCGATG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 311, 892
Cac8I GCNNGC 1 cut(s) 777
CaiI CAGNNNCTG 1 cut(s) 545
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 103
ClaI ATCGAT 2 cut(s) 706, 849
Csp6I GTAC 2 cut(s) 593, 964
CviAII CATG 5 cut(s) 134, 361, 509, 622, 863
CviQI GTAC 2 cut(s) 593, 964
DdeI CTNAG 4 cut(s) 64, 107, 314, 905
DpnI GATC 6 cut(s) 188, 282, 307, 578, 879, 1020
DpnII GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
Eco130I CCWWGG 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 5 cut(s) 137, 364, 512, 625, 866
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 5 cut(s) 133, 360, 508, 621, 862
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 377, 918
Fsp4HI GCNGC 2 cut(s) 377, 918
FspBI CTAG 1 cut(s) 719
GlaI GCGC 1 cut(s) 341
GluI GCNGC 2 cut(s) 377, 918
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 3 cut(s) 58, 176, 893
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 342
Hin1II CATG 5 cut(s) 137, 364, 512, 625, 866
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 902
HinfI GANTC 6 cut(s) 83, 92, 356, 694, 708, 858
HpaII CCGG 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 5 cut(s) 67, 88, 193, 410, 583
Hpy188III TCNNGA 4 cut(s) 122, 546, 605, 818
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 4 cut(s) 46, 164, 887, 898
HpyCH4IV ACGT 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 4 cut(s) 64, 107, 314, 905
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 5 cut(s) 137, 364, 512, 625, 866
HspAI GCGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
LmnI GCTCC 2 cut(s) 247, 979
Lsp1109I GCAGC 2 cut(s) 363, 929
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 719
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 110
MalI GATC 6 cut(s) 188, 282, 307, 578, 879, 1020
MboI GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
MboII GAAGA 3 cut(s) 137, 335, 887
MfeI CAATTG 1 cut(s) 926
MflI RGATCY 4 cut(s) 186, 305, 877, 1018
MluCI AATT 7 cut(s) 166, 223, 326, 504, 529, 662, 926
MlyI GAGTC 2 cut(s) 77, 350
MnlI CCTC 5 cut(s) 68, 388, 435, 883, 902
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 3 cut(s) 264, 648, 770
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 1 cut(s) 37
MunI CAATTG 1 cut(s) 926
MwoI GCNNNNNNNGC 1 cut(s) 69
NciI CCSGG 1 cut(s) 37
NdeII GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
NlaIII CATG 5 cut(s) 137, 364, 512, 625, 866
PfeI GAWTC 4 cut(s) 92, 694, 708, 858
PkrI GCNGC 2 cut(s) 378, 919
PleI GAGTC 2 cut(s) 77, 350
PpsI GAGTC 2 cut(s) 77, 350
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 103
PsiI TTATAA 1 cut(s) 615
Psp5II RGGWCCY 1 cut(s) 103
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PstI CTGCAG 2 cut(s) 381, 425
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 4 cut(s) 186, 305, 877, 1018
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 2 cut(s) 594, 965
RsaNI GTAC 2 cut(s) 593, 964
RseI CAYNNNNRTG 3 cut(s) 264, 648, 770
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 2 cut(s) 377, 918
Sau3AI GATC 6 cut(s) 186, 280, 305, 576, 877, 1018
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 2 cut(s) 77, 350
ScrFI CCNGG 1 cut(s) 37
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 2 cut(s) 377, 421
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 3 cut(s) 264, 648, 770
Sse9I AATT 7 cut(s) 166, 223, 326, 504, 529, 662, 926
SsiI CCGC 2 cut(s) 72, 742
SspI AATATT 1 cut(s) 1002
SspMI CTAG 1 cut(s) 719
StyD4I CCNGG 1 cut(s) 35
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 4 cut(s) 46, 164, 887, 898
TaiI ACGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 48, 706, 849
TaqII GACCGA 1 cut(s) 249
TasI AATT 7 cut(s) 166, 223, 326, 504, 529, 662, 926
TatI WGTACW 1 cut(s) 592
TfiI GAWTC 4 cut(s) 92, 694, 708, 858
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 2 cut(s) 318, 892
TseI GCWGC 2 cut(s) 376, 917
TspDTI ATGAA 4 cut(s) 497, 504, 525, 799
TspRI CASTG 2 cut(s) 318, 892
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 2 cut(s) 223, 662
XspI CTAG 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.