RLG00000026002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015372
Physical Location & Seq
Reverse (-)
49773237 .. 49773950
714 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026002

Sequence Viewer

Length: 714 bp
ATGACCGTTGGGCATTCCTTTGTATATAATCCTCCCCTGCTGGCCACTGGCTACCTACAAATTCATTCAATCAACACCAACCTTAGTATCTCTGCCAGTTTGTTCAAGCCCAGCCAGCCAGCATTAGTAAGCATGGGTATAGGGATGAACATGAACAACTCGAACCCATCAGTGTCTCCATCCCACTACCACACCCACAAGGTGTTCCTTCTGTGCAACTACATACTCTTGGGTGCAGCCTCCAGTTGCATCTTCCTCACCCTCTCTCTGCGCCTCCTCCCCTCCGTCTGTGGCTTCTTCGTCATCCTCCTCCACATATTCACCATCGCCGGGGCCGTCTCTGGATGCGCCGCCGCCTCAGCAGGGACAGGAAAGTGGTACGGAGCCCACATGGTGGCCACAGTACTCACAGCAATATTCCAAGGCTCAGTGTCGGTGCTAATCTTCACCAGAACCGGTGATTTTCTTGGGGAGCTCAAGTCGTACGTGAGGGAAGAGGATGCCTCTGTTATTCTCAAACTGGGCGGTGGCCTCAGTATTTTGATCTTTTGCCTGGAGTGGGTGGTCTTGACCCTTGCATTTTTCTTGAAGTACTATGCCTCTGTTGAAGGTGATCATATTCAGCTTGGTGCTAATTCTAGAGCTGCTATGAGGAGTTCCAAGGTGCAACAAGACGAGGATTTGAAGGACTGGCCATGGCCCTTCCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

25.67

Weight (kDa)

7.7

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16250
fragaria_vesca FvH4_6g00070
malus_domestica MD00G1017200.v1.1 MD12G1261500.v1.1
prunus_persica Prupe.6G365300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0447401
rosa_laevigata RLG00000026002
rosa_multiflora Rmu_ssc0000473.1_g000017 Rmu_ssc0000473.1_g000019
rosa_roxburghii Rroxscaffold_6G00425600
rosa_rugosa Rorug02G0601200
rosa_samantha Rh3AG001300 Rh3BG001000 Rh3CG001100 Rh3DG001200
rosa_wichuraiana Rw3G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 394
AciI CCGC 3 cut(s) 351, 354, 525
AcoI YGGCCR 3 cut(s) 42, 396, 692
AcsI RAATTY 1 cut(s) 60
AdeI CACNNNGTG 2 cut(s) 202, 394
AfaI GTAC 4 cut(s) 380, 405, 485, 593
AfiI CCNNNNNNNGG 4 cut(s) 330, 363, 394, 559
AgeI ACCGGT 1 cut(s) 455
AgsI TTSAA 5 cut(s) 69, 106, 589, 608, 685
AjnI CCWGG 1 cut(s) 552
AluBI AGCT 3 cut(s) 475, 625, 644
AluI AGCT 3 cut(s) 475, 625, 644
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 180, 343
AoxI GGCC 6 cut(s) 42, 333, 396, 529, 692, 698
ApeKI GCWGC 2 cut(s) 236, 644
ApoI RAATTY 1 cut(s) 60
AsiGI ACCGGT 1 cut(s) 455
AspLEI GCGC 2 cut(s) 273, 350
AspS9I GGNCC 2 cut(s) 333, 699
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 5 cut(s) 250, 313, 439, 470, 623
BaeI ACNNNNGTAYC 2 cut(s) 70, 103
BalI TGGCCA 3 cut(s) 44, 398, 694
BanII GRGCYC 2 cut(s) 388, 477
Bbv12I GWGCWC 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 248, 631
BccI CCATC 3 cut(s) 175, 187, 332
BceAI ACGGC 1 cut(s) 320
BciT130I CCWGG 1 cut(s) 554
BclI TGATCA 1 cut(s) 613
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 180, 343
BfaI CTAG 1 cut(s) 639
BisI GCNGC 4 cut(s) 237, 351, 354, 645
BlsI GCNGC 4 cut(s) 238, 352, 355, 646
BmcAI AGTACT 2 cut(s) 405, 593
Bme1390I CCNGG 2 cut(s) 331, 554
BmgT120I GGNCC 2 cut(s) 333, 699
BmiI GGNNCC 2 cut(s) 334, 385
BmrFI CCNGG 2 cut(s) 331, 554
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 3 cut(s) 258, 335, 490
BmuI ACTGGG 1 cut(s) 530
BplI GAGNNNNNCTC 2 cut(s) 488, 520
BpmI CTGGAG 2 cut(s) 226, 575
Bpu10I CCTNAGC 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 1 cut(s) 331
BsaAI YACGTR 1 cut(s) 487
BsaJI CCNNGG 4 cut(s) 330, 421, 660, 695
BsaWI WCCGGW 1 cut(s) 455
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bsc4I CCNNNNNNNGG 4 cut(s) 330, 363, 394, 559
Bse118I RCCGGY 1 cut(s) 455
Bse1I ACTGG 5 cut(s) 52, 96, 243, 525, 695
BseBI CCWGG 1 cut(s) 554
BseDI CCNNGG 4 cut(s) 330, 421, 660, 695
BseGI GGATG 5 cut(s) 150, 179, 303, 350, 505
BseLI CCNNNNNNNGG 4 cut(s) 330, 363, 394, 559
BseMII CTCAG 3 cut(s) 372, 441, 547
BseNI ACTGG 5 cut(s) 52, 96, 243, 525, 695
BseRI GAGGAG 3 cut(s) 266, 299, 667
BseXI GCAGC 2 cut(s) 248, 631
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 6 cut(s) 44, 335, 398, 531, 694, 700
BshTI ACCGGT 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 2 cut(s) 330, 456
BsiWI CGTACG 1 cut(s) 483
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 4 cut(s) 330, 363, 394, 559
BsmAI GTCTC 2 cut(s) 180, 343
BsmBI CGTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 6 cut(s) 44, 335, 398, 531, 694, 700
Bsp1286I GDGCHC 2 cut(s) 388, 477
Bsp143I GATC 2 cut(s) 543, 613
Bsp19I CCATGG 1 cut(s) 695
BspACI CCGC 3 cut(s) 351, 354, 525
BspANI GGCC 6 cut(s) 44, 335, 398, 531, 694, 700
BspCNI CTCAG 3 cut(s) 371, 440, 546
BspLI GGNNCC 2 cut(s) 334, 385
BsrFI RCCGGY 1 cut(s) 455
BsrI ACTGG 5 cut(s) 52, 96, 243, 525, 695
BssAI RCCGGY 1 cut(s) 455
BssECI CCNNGG 4 cut(s) 330, 421, 660, 695
BssMI GATC 2 cut(s) 543, 613
BssT1I CCWWGG 3 cut(s) 421, 660, 695
Bst2UI CCWGG 1 cut(s) 554
Bst4CI ACNGT 2 cut(s) 7, 403
Bst6I CTCTTC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 3 cut(s) 42, 116, 120
BstDEI CTNAG 4 cut(s) 83, 358, 427, 533
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 5 cut(s) 150, 179, 303, 350, 505
BstHHI GCGC 2 cut(s) 273, 350
BstKTI GATC 2 cut(s) 546, 616
BstMAI GTCTC 2 cut(s) 180, 343
BstMBI GATC 2 cut(s) 543, 613
BstMWI GCNNNNNNNGC 2 cut(s) 115, 359
BstNI CCWGG 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 329, 552
BstV1I GCAGC 2 cut(s) 248, 631
BsuRI GGCC 6 cut(s) 44, 335, 398, 531, 694, 700
BtgI CCRYGG 1 cut(s) 695
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 5 cut(s) 150, 179, 303, 350, 505
BtsIMutI CAGTG 3 cut(s) 45, 177, 435
Cac8I GCNNGC 3 cut(s) 42, 116, 120
CfoI GCGC 2 cut(s) 273, 350
Cfr10I RCCGGY 1 cut(s) 455
Cfr13I GGNCC 2 cut(s) 333, 699
Csp6I GTAC 4 cut(s) 379, 404, 484, 592
CspAI ACCGGT 1 cut(s) 455
CviAII CATG 4 cut(s) 133, 151, 391, 696
CviQI GTAC 4 cut(s) 379, 404, 484, 592
DdeI CTNAG 4 cut(s) 83, 358, 427, 533
DpnI GATC 2 cut(s) 545, 615
DpnII GATC 2 cut(s) 543, 613
DraIII CACNNNGTG 2 cut(s) 202, 394
EaeI YGGCCR 3 cut(s) 42, 396, 692
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 475
Eco130I CCWWGG 3 cut(s) 421, 660, 695
Eco24I GRGCYC 2 cut(s) 388, 477
Eco53kI GAGCTC 1 cut(s) 475
EcoICRI GAGCTC 1 cut(s) 475
EcoRII CCWGG 1 cut(s) 552
EcoT14I CCWWGG 3 cut(s) 421, 660, 695
EcoT38I GRGCYC 2 cut(s) 388, 477
ErhI CCWWGG 3 cut(s) 421, 660, 695
Esp3I CGTCTC 1 cut(s) 343
FaeI CATG 4 cut(s) 136, 154, 394, 699
FaqI GGGAC 1 cut(s) 379
FatI CATG 4 cut(s) 132, 150, 390, 695
FbaI TGATCA 1 cut(s) 613
Fnu4HI GCNGC 4 cut(s) 237, 351, 354, 645
FokI GGATG 5 cut(s) 157, 166, 290, 357, 512
FriOI GRGCYC 2 cut(s) 388, 477
Fsp4HI GCNGC 4 cut(s) 237, 351, 354, 645
FspBI CTAG 1 cut(s) 639
GlaI GCGC 2 cut(s) 272, 349
GluI GCNGC 4 cut(s) 237, 351, 354, 645
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 2 cut(s) 226, 575
HaeIII GGCC 6 cut(s) 44, 335, 398, 531, 694, 700
HapII CCGG 2 cut(s) 330, 456
HhaI GCGC 2 cut(s) 273, 350
Hin1II CATG 4 cut(s) 136, 154, 394, 699
Hin6I GCGC 2 cut(s) 271, 348
HinP1I GCGC 2 cut(s) 271, 348
HpaII CCGG 2 cut(s) 330, 456
HphI GGTGA 5 cut(s) 250, 313, 439, 470, 623
Hpy188III TCNNGA 4 cut(s) 342, 568, 586, 639
HpyAV CCTTC 4 cut(s) 218, 602, 679, 712
HpyCH4III ACNGT 2 cut(s) 7, 403
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 5 cut(s) 216, 236, 249, 578, 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 359
HpyF3I CTNAG 4 cut(s) 83, 358, 427, 533
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 4 cut(s) 136, 154, 394, 699
HspAI GCGC 2 cut(s) 271, 348
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 2 cut(s) 543, 613
LmnI GCTCC 2 cut(s) 383, 472
Lsp1109I GCAGC 2 cut(s) 248, 631
LweI GCATC 3 cut(s) 258, 335, 490
MaeI CTAG 1 cut(s) 639
MaeII ACGT 1 cut(s) 486
MalI GATC 2 cut(s) 545, 615
MboI GATC 2 cut(s) 543, 613
MboII GAAGA 4 cut(s) 244, 289, 436, 506
MhlI GDGCHC 2 cut(s) 388, 477
MlsI TGGCCA 3 cut(s) 44, 398, 694
MluCI AATT 2 cut(s) 60, 634
MluNI TGGCCA 3 cut(s) 44, 398, 694
Mox20I TGGCCA 3 cut(s) 44, 398, 694
MscI TGGCCA 3 cut(s) 44, 398, 694
Msp20I TGGCCA 3 cut(s) 44, 398, 694
MspI CCGG 2 cut(s) 330, 456
MspR9I CCNGG 2 cut(s) 331, 554
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 115, 359
NciI CCSGG 1 cut(s) 331
NcoI CCATGG 1 cut(s) 695
NdeII GATC 2 cut(s) 543, 613
NlaIII CATG 4 cut(s) 136, 154, 394, 699
NlaIV GGNNCC 2 cut(s) 334, 385
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 13
Pfl23II CGTACG 1 cut(s) 483
PflMI CCANNNNNTGG 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 455
PkrI GCNGC 4 cut(s) 238, 352, 355, 646
Ppu21I YACGTR 1 cut(s) 487
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 552
PspLI CGTACG 1 cut(s) 483
PspN4I GGNNCC 2 cut(s) 334, 385
PspPI GGNCC 2 cut(s) 333, 699
RsaI GTAC 4 cut(s) 380, 405, 485, 593
RsaNI GTAC 4 cut(s) 379, 404, 484, 592
SacI GAGCTC 1 cut(s) 477
SatI GCNGC 4 cut(s) 237, 351, 354, 645
Sau3AI GATC 2 cut(s) 543, 613
Sau96I GGNCC 2 cut(s) 333, 699
ScaI AGTACT 2 cut(s) 405, 593
ScrFI CCNGG 2 cut(s) 331, 554
SduI GDGCHC 2 cut(s) 388, 477
SetI ASST 9 cut(s) 57, 84, 204, 477, 489, 613, 627, 646, 666
SfaNI GCATC 3 cut(s) 258, 335, 490
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 2 cut(s) 60, 634
SsiI CCGC 3 cut(s) 351, 354, 525
SspI AATATT 1 cut(s) 417
SspMI CTAG 1 cut(s) 639
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 2 cut(s) 329, 552
StyI CCWWGG 3 cut(s) 421, 660, 695
TaaI ACNGT 2 cut(s) 7, 403
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 161
TasI AATT 2 cut(s) 60, 634
TatI WGTACW 2 cut(s) 403, 591
TauI GCSGC 2 cut(s) 353, 356
TscAI CASTG 3 cut(s) 52, 177, 435
TseI GCWGC 2 cut(s) 236, 644
TspDTI ATGAA 3 cut(s) 53, 161, 167
TspGWI ACGGA 2 cut(s) 274, 396
TspRI CASTG 3 cut(s) 52, 177, 435
Van91I CCANNNNNTGG 1 cut(s) 394
XapI RAATTY 1 cut(s) 60
XbaI TCTAGA 1 cut(s) 638
XspI CTAG 1 cut(s) 639
ZrmI AGTACT 2 cut(s) 405, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.