Rroxscaffold_6G00425600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015372
Physical Location & Seq
Forward (+)
46622952 .. 46623533
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425600.1

Sequence Viewer

Length: 582 bp
ATGGGTATAGGGATGAACATGAACAACTCGAACCCATCAGTGTCTCCATCCCACTACCACACCCACAAGGTGTTCCTTTTGTGCAACTACATACTCTTGGGTGCAGCCTCCAGTTGCATCTTCCTCACCCTCTCTCTGCGCCTCCTCCCCTCCGTCTGTGGCTTCTTCGTCATCCTCCTCCACATATTCACCATCGCCGGGGCCGTCTCTGGATGCGCCGCCGCCTCAGCAGGGACAGGAAAGTGGTACGGAGCCCACATGGTGGCCACAGTACTCACAGCAATATTCCAAGGCTCAGTGTCGGTGCTAATCTTCACCAGAACCGGTGACTTTCTTGGGGAGCTCAAGTCGTACGTGAGGGAAGAGGATGCCTCTGTTATTCTCAAATTGGGCGGTGGCCTCAGTATTTTGATCTTTTGCTTGGAGTGGGTGGTCTTGACCCTTGCATTTTTCTTGAAGTACTATGCCTCTGTTGAAGGTGATCATATTCAGCTTGGTGCTAATTCTAGAGCTGCTATGAGGAGTTCCAAGGTGCAACAAGAGGAGGATTTGAAGGACTGGCCATGGCCCTTCCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.99

Weight (kDa)

6.99

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16250
fragaria_vesca FvH4_6g00070
malus_domestica MD00G1017200.v1.1 MD12G1261500.v1.1
prunus_persica Prupe.6G365300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0447401
rosa_laevigata RLG00000026002
rosa_multiflora Rmu_ssc0000473.1_g000017 Rmu_ssc0000473.1_g000019
rosa_roxburghii Rroxscaffold_6G00425600
rosa_rugosa Rorug02G0601200
rosa_samantha Rh3AG001300 Rh3BG001000 Rh3CG001100 Rh3DG001200
rosa_wichuraiana Rw3G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 262
AciI CCGC 3 cut(s) 219, 222, 393
AcoI YGGCCR 2 cut(s) 264, 560
AdeI CACNNNGTG 2 cut(s) 70, 262
AfaI GTAC 4 cut(s) 248, 273, 353, 461
AfiI CCNNNNNNNGG 3 cut(s) 198, 231, 262
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 3 cut(s) 457, 476, 553
AluBI AGCT 3 cut(s) 343, 493, 512
AluI AGCT 3 cut(s) 343, 493, 512
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 48, 211
AoxI GGCC 5 cut(s) 201, 264, 397, 560, 566
ApeKI GCWGC 2 cut(s) 104, 512
AsiGI ACCGGT 1 cut(s) 323
AspLEI GCGC 2 cut(s) 141, 218
AspS9I GGNCC 2 cut(s) 201, 567
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 5 cut(s) 118, 181, 307, 338, 491
BalI TGGCCA 2 cut(s) 266, 562
BanII GRGCYC 2 cut(s) 256, 345
Bbv12I GWGCWC 1 cut(s) 345
BbvCI CCTCAGC 1 cut(s) 226
BbvI GCAGC 2 cut(s) 116, 499
BccI CCATC 3 cut(s) 43, 55, 200
BceAI ACGGC 1 cut(s) 188
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 48, 211
BfaI CTAG 1 cut(s) 507
BisI GCNGC 4 cut(s) 105, 219, 222, 513
BlsI GCNGC 4 cut(s) 106, 220, 223, 514
BmcAI AGTACT 2 cut(s) 273, 461
Bme1390I CCNGG 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 201, 567
BmiI GGNNCC 2 cut(s) 202, 253
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 3 cut(s) 126, 203, 358
BplI GAGNNNNNCTC 2 cut(s) 356, 388
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 355
BsaJI CCNNGG 4 cut(s) 198, 289, 528, 563
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 231, 262
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 111, 563
BseDI CCNNGG 4 cut(s) 198, 289, 528, 563
BseGI GGATG 5 cut(s) 18, 47, 171, 218, 373
BseLI CCNNNNNNNGG 3 cut(s) 198, 231, 262
BseMII CTCAG 3 cut(s) 240, 309, 415
BseNI ACTGG 2 cut(s) 111, 563
BseRI GAGGAG 4 cut(s) 134, 167, 535, 557
BseXI GCAGC 2 cut(s) 116, 499
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 5 cut(s) 203, 266, 399, 562, 568
BshTI ACCGGT 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 2 cut(s) 198, 324
BsiWI CGTACG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 3 cut(s) 198, 231, 262
BsmAI GTCTC 2 cut(s) 48, 211
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 5 cut(s) 203, 266, 399, 562, 568
Bsp1286I GDGCHC 2 cut(s) 256, 345
Bsp143I GATC 2 cut(s) 411, 481
Bsp19I CCATGG 1 cut(s) 563
BspACI CCGC 3 cut(s) 219, 222, 393
BspANI GGCC 5 cut(s) 203, 266, 399, 562, 568
BspCNI CTCAG 3 cut(s) 239, 308, 414
BspLI GGNNCC 2 cut(s) 202, 253
BsrFI RCCGGY 1 cut(s) 323
BsrI ACTGG 2 cut(s) 111, 563
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 4 cut(s) 198, 289, 528, 563
BssMI GATC 2 cut(s) 411, 481
BssT1I CCWWGG 3 cut(s) 289, 528, 563
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 357
BstBAI YACGTR 1 cut(s) 355
BstDEI CTNAG 3 cut(s) 226, 295, 401
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 5 cut(s) 18, 47, 171, 218, 373
BstHHI GCGC 2 cut(s) 141, 218
BstKTI GATC 2 cut(s) 414, 484
BstMAI GTCTC 2 cut(s) 48, 211
BstMBI GATC 2 cut(s) 411, 481
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 116, 499
BsuRI GGCC 5 cut(s) 203, 266, 399, 562, 568
BtgI CCRYGG 1 cut(s) 563
BtgZI GCGATG 1 cut(s) 178
BtsCI GGATG 5 cut(s) 18, 47, 171, 218, 373
BtsIMutI CAGTG 2 cut(s) 45, 303
CfoI GCGC 2 cut(s) 141, 218
Cfr10I RCCGGY 1 cut(s) 323
Cfr13I GGNCC 2 cut(s) 201, 567
Csp6I GTAC 4 cut(s) 247, 272, 352, 460
CspAI ACCGGT 1 cut(s) 323
CviAII CATG 3 cut(s) 19, 259, 564
CviQI GTAC 4 cut(s) 247, 272, 352, 460
DdeI CTNAG 3 cut(s) 226, 295, 401
DpnI GATC 2 cut(s) 413, 483
DpnII GATC 2 cut(s) 411, 481
DraIII CACNNNGTG 2 cut(s) 70, 262
EaeI YGGCCR 2 cut(s) 264, 560
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 3 cut(s) 289, 528, 563
Eco24I GRGCYC 2 cut(s) 256, 345
Eco53kI GAGCTC 1 cut(s) 343
EcoICRI GAGCTC 1 cut(s) 343
EcoT14I CCWWGG 3 cut(s) 289, 528, 563
EcoT38I GRGCYC 2 cut(s) 256, 345
ErhI CCWWGG 3 cut(s) 289, 528, 563
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 3 cut(s) 22, 262, 567
FaiI YATR 9 cut(s) 8, 20, 92, 185, 260, 465, 486, 518, 565
FaqI GGGAC 1 cut(s) 247
FatI CATG 3 cut(s) 18, 258, 563
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 4 cut(s) 105, 219, 222, 513
FokI GGATG 5 cut(s) 25, 34, 158, 225, 380
FriOI GRGCYC 2 cut(s) 256, 345
Fsp4HI GCNGC 4 cut(s) 105, 219, 222, 513
FspBI CTAG 1 cut(s) 507
GlaI GCGC 2 cut(s) 140, 217
GluI GCNGC 4 cut(s) 105, 219, 222, 513
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 5 cut(s) 203, 266, 399, 562, 568
HapII CCGG 2 cut(s) 198, 324
HhaI GCGC 2 cut(s) 141, 218
Hin1II CATG 3 cut(s) 22, 262, 567
Hin6I GCGC 2 cut(s) 139, 216
HinP1I GCGC 2 cut(s) 139, 216
HpaII CCGG 2 cut(s) 198, 324
HphI GGTGA 5 cut(s) 118, 181, 307, 338, 491
Hpy188III TCNNGA 4 cut(s) 210, 436, 454, 507
HpyAV CCTTC 3 cut(s) 470, 547, 580
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 354
HpyCH4V TGCA 5 cut(s) 84, 104, 117, 446, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpyF3I CTNAG 3 cut(s) 226, 295, 401
HpySE526I ACGT 1 cut(s) 354
Hsp92II CATG 3 cut(s) 22, 262, 567
HspAI GCGC 2 cut(s) 139, 216
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 411, 481
LmnI GCTCC 2 cut(s) 251, 340
LpnPI CCDG 8 cut(s) 124, 195, 211, 216, 222, 331, 337, 544
Lsp1109I GCAGC 2 cut(s) 116, 499
LweI GCATC 3 cut(s) 126, 203, 358
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 354
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 413, 483
MboI GATC 2 cut(s) 411, 481
MboII GAAGA 4 cut(s) 112, 157, 304, 374
MhlI GDGCHC 2 cut(s) 256, 345
MlsI TGGCCA 2 cut(s) 266, 562
MluCI AATT 2 cut(s) 386, 502
MluNI TGGCCA 2 cut(s) 266, 562
Mox20I TGGCCA 2 cut(s) 266, 562
MscI TGGCCA 2 cut(s) 266, 562
Msp20I TGGCCA 2 cut(s) 266, 562
MspI CCGG 2 cut(s) 198, 324
MspR9I CCNGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 199
NcoI CCATGG 1 cut(s) 563
NdeII GATC 2 cut(s) 411, 481
NlaIII CATG 3 cut(s) 22, 262, 567
NlaIV GGNNCC 2 cut(s) 202, 253
NmuCI GTSAC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 201
Pfl23II CGTACG 1 cut(s) 351
PflMI CCANNNNNTGG 1 cut(s) 262
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 4 cut(s) 106, 220, 223, 514
Ppu21I YACGTR 1 cut(s) 355
Psp124BI GAGCTC 1 cut(s) 345
PspLI CGTACG 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 202, 253
PspPI GGNCC 2 cut(s) 201, 567
RsaI GTAC 4 cut(s) 248, 273, 353, 461
RsaNI GTAC 4 cut(s) 247, 272, 352, 460
SacI GAGCTC 1 cut(s) 345
SatI GCNGC 4 cut(s) 105, 219, 222, 513
Sau3AI GATC 2 cut(s) 411, 481
Sau96I GGNCC 2 cut(s) 201, 567
ScaI AGTACT 2 cut(s) 273, 461
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 2 cut(s) 256, 345
SetI ASST 7 cut(s) 72, 345, 357, 481, 495, 514, 534
SfaNI GCATC 3 cut(s) 126, 203, 358
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 386, 502
SsiI CCGC 3 cut(s) 219, 222, 393
SspI AATATT 1 cut(s) 285
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 3 cut(s) 289, 528, 563
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 357
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 386, 502
TatI WGTACW 2 cut(s) 271, 459
TauI GCSGC 2 cut(s) 221, 224
TscAI CASTG 2 cut(s) 45, 303
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 2 cut(s) 104, 512
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 29, 35
TspGWI ACGGA 2 cut(s) 142, 264
TspRI CASTG 2 cut(s) 45, 303
Van91I CCANNNNNTGG 1 cut(s) 262
XbaI TCTAGA 1 cut(s) 506
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 2 cut(s) 273, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.