Prupe.6G365300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015372
Physical Location & Seq
Reverse (-)
30659809 .. 30660387
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G365300.1

Sequence Viewer

Length: 579 bp
ATGGGTGGTCTGTCGATGAATATTTCCAACGGCGCAGGAGGAGCAAGGTCCGGTTCCCAGTACCACACCCACAAGGTGTTCCTGTTGTGCAACTATATTTTGCTAGGCGCGGCCTCCAGCTGCATCTTCCTCACGCTGTCTCTGCGGCTGCTCCCCTCAGTGTGCGGCTTCTTCCTCATCCTCCTCCACATATTCACAATTGGGGGGGCAATATCTGGATGCGCGGCAGCCTCCGCGGGGACGACGTCGGGCAAGTGGTATGGAGCCCACATGGTGGCCACAGTGCTGACAGCAATATTTCAGGGGTCTGTGTCAGTGCTCATCTTCACGAGGACGGGTGACTTTCTTGGGGAGCTGAGGTCGTACGTGAGGGATGAGGACGGCGCTGTGATACTCAAATTGGCTGGAGGCCTCAGTGTCGTCATCTTTTGCTTGGAGTGGGTGGTCCTGACCCTCGCCTTTTTCCTCAAGTACTATGCCTCTGTCCAAGGCACTACTACTGCTTCTCCTGCTATGAGGAGTTCCAAGGTGCAACAAGAGGAGGACTTGAAGGACTGGCCATGGCCATTCCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

20.53

Weight (kDa)

8.3

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015372)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16250
fragaria_vesca FvH4_6g00070
malus_domestica MD00G1017200.v1.1 MD12G1261500.v1.1
prunus_persica Prupe.6G365300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0447401
rosa_laevigata RLG00000026002
rosa_multiflora Rmu_ssc0000473.1_g000017 Rmu_ssc0000473.1_g000019
rosa_roxburghii Rroxscaffold_6G00425600
rosa_rugosa Rorug02G0601200
rosa_samantha Rh3AG001300 Rh3BG001000 Rh3CG001100 Rh3DG001200
rosa_wichuraiana Rw3G000070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 274
AccII CGCG 3 cut(s) 110, 224, 236
AciI CCGC 6 cut(s) 110, 145, 165, 224, 234, 236
AcoI YGGCCR 3 cut(s) 276, 557, 563
AcyI GRCGYC 1 cut(s) 245
AdeI CACNNNGTG 2 cut(s) 76, 274
AfaI GTAC 3 cut(s) 62, 365, 473
AfiI CCNNNNNNNGG 2 cut(s) 237, 274
AgsI TTSAA 1 cut(s) 550
AluBI AGCT 2 cut(s) 120, 355
AluI AGCT 2 cut(s) 120, 355
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 144
AoxI GGCC 5 cut(s) 111, 276, 409, 557, 563
ApeKI GCWGC 3 cut(s) 120, 148, 227
AspLEI GCGC 4 cut(s) 35, 110, 224, 386
AspS9I GGNCC 2 cut(s) 48, 445
AsuHPI GGTGA 1 cut(s) 350
AvaII GGWCC 2 cut(s) 48, 445
BalI TGGCCA 3 cut(s) 278, 559, 565
BanII GRGCYC 1 cut(s) 268
BauI CACGAG 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 356
BbvI GCAGC 3 cut(s) 107, 135, 239
BceAI ACGGC 2 cut(s) 46, 397
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 104
BfoI RGCGCY 1 cut(s) 387
BisI GCNGC 7 cut(s) 111, 121, 146, 149, 166, 225, 228
BlsI GCNGC 7 cut(s) 112, 122, 147, 150, 167, 226, 229
BmcAI AGTACT 1 cut(s) 473
Bme18I GGWCC 2 cut(s) 48, 445
BmgT120I GGNCC 2 cut(s) 48, 445
BmiI GGNNCC 2 cut(s) 55, 265
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 132, 209
BmuI ACTGGG 1 cut(s) 52
BpmI CTGGAG 2 cut(s) 100, 426
Bpu10I CCTNAGC 1 cut(s) 356
BpuEI CTTGAG 1 cut(s) 452
BsaAI YACGTR 1 cut(s) 367
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 4 cut(s) 234, 487, 525, 560
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 4 cut(s) 344, 374, 490, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 274
Bse1I ACTGG 2 cut(s) 58, 560
BseDI CCNNGG 4 cut(s) 234, 487, 525, 560
BseGI GGATG 3 cut(s) 177, 224, 379
BseLI CCNNNNNNNGG 2 cut(s) 237, 274
BseMII CTCAG 3 cut(s) 171, 347, 427
BseNI ACTGG 2 cut(s) 58, 560
BseRI GAGGAG 4 cut(s) 54, 173, 532, 554
BseXI GCAGC 3 cut(s) 107, 135, 239
Bsh1236I CGCG 3 cut(s) 110, 224, 236
BshFI GGCC 5 cut(s) 113, 278, 411, 559, 565
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 1 cut(s) 51
BsiWI CGTACG 1 cut(s) 363
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 237, 274
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 5 cut(s) 113, 278, 411, 559, 565
Bsp1286I GDGCHC 2 cut(s) 268, 321
Bsp19I CCATGG 1 cut(s) 560
BspACI CCGC 6 cut(s) 110, 145, 165, 224, 234, 236
BspANI GGCC 5 cut(s) 113, 278, 411, 559, 565
BspCNI CTCAG 3 cut(s) 170, 348, 426
BspFNI CGCG 3 cut(s) 110, 224, 236
BspLI GGNNCC 2 cut(s) 55, 265
BsrI ACTGG 2 cut(s) 58, 560
BssECI CCNNGG 4 cut(s) 234, 487, 525, 560
BssNI GRCGYC 1 cut(s) 245
BssSI CACGAG 1 cut(s) 328
BssT1I CCWWGG 3 cut(s) 487, 525, 560
Bst2BI CACGAG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 245
BstBAI YACGTR 1 cut(s) 367
BstDEI CTNAG 3 cut(s) 157, 356, 413
BstDSI CCRYGG 2 cut(s) 234, 560
BstF5I GGATG 3 cut(s) 177, 224, 379
BstFNI CGCG 3 cut(s) 110, 224, 236
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 4 cut(s) 35, 110, 224, 386
BstMAI GTCTC 1 cut(s) 144
BstMWI GCNNNNNNNGC 4 cut(s) 41, 142, 233, 509
BstUI CGCG 3 cut(s) 110, 224, 236
BstV1I GCAGC 3 cut(s) 107, 135, 239
BsuRI GGCC 5 cut(s) 113, 278, 411, 559, 565
BtgI CCRYGG 2 cut(s) 234, 560
BtsCI GGATG 3 cut(s) 177, 224, 379
BtsIMutI CAGTG 4 cut(s) 165, 288, 321, 421
CfoI GCGC 4 cut(s) 35, 110, 224, 386
Cfr13I GGNCC 2 cut(s) 48, 445
Cfr42I CCGCGG 1 cut(s) 237
Csp6I GTAC 3 cut(s) 61, 364, 472
CviAII CATG 2 cut(s) 271, 561
CviQI GTAC 3 cut(s) 61, 364, 472
DdeI CTNAG 3 cut(s) 157, 356, 413
DraIII CACNNNGTG 2 cut(s) 76, 274
EaeI YGGCCR 3 cut(s) 276, 557, 563
Eco130I CCWWGG 3 cut(s) 487, 525, 560
Eco147I AGGCCT 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 48, 445
EcoT14I CCWWGG 3 cut(s) 487, 525, 560
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 3 cut(s) 487, 525, 560
FaeI CATG 2 cut(s) 274, 564
FaiI YATR 7 cut(s) 96, 191, 261, 272, 477, 515, 562
FaqI GGGAC 1 cut(s) 253
FatI CATG 2 cut(s) 270, 560
FauI CCCGC 1 cut(s) 229
Fnu4HI GCNGC 7 cut(s) 111, 121, 146, 149, 166, 225, 228
FokI GGATG 3 cut(s) 164, 231, 386
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 7 cut(s) 111, 121, 146, 149, 166, 225, 228
FspBI CTAG 1 cut(s) 104
GlaI GCGC 4 cut(s) 34, 109, 223, 385
GluI GCNGC 7 cut(s) 111, 121, 146, 149, 166, 225, 228
GsuI CTGGAG 2 cut(s) 100, 426
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 5 cut(s) 113, 278, 411, 559, 565
HapII CCGG 1 cut(s) 51
HhaI GCGC 4 cut(s) 35, 110, 224, 386
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 2 cut(s) 274, 564
Hin6I GCGC 4 cut(s) 33, 108, 222, 384
HinP1I GCGC 4 cut(s) 33, 108, 222, 384
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 350
Hpy188III TCNNGA 3 cut(s) 216, 328, 448
Hpy99I CGWCG 2 cut(s) 247, 250
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 2 cut(s) 245, 366
HpyCH4V TGCA 3 cut(s) 90, 123, 532
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 142, 233, 509
HpyF3I CTNAG 3 cut(s) 157, 356, 413
HpySE526I ACGT 2 cut(s) 245, 366
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 2 cut(s) 274, 564
HspAI GCGC 4 cut(s) 33, 108, 222, 384
KspI CCGCGG 1 cut(s) 237
LmnI GCTCC 4 cut(s) 41, 156, 263, 352
Lsp1109I GCAGC 3 cut(s) 107, 135, 239
LweI GCATC 2 cut(s) 132, 209
MaeI CTAG 1 cut(s) 104
MaeII ACGT 2 cut(s) 245, 366
MaeIII GTNAC 1 cut(s) 338
MboII GAAGA 3 cut(s) 118, 163, 316
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 2 cut(s) 268, 321
MlsI TGGCCA 3 cut(s) 278, 559, 565
MluCI AATT 2 cut(s) 198, 398
MluNI TGGCCA 3 cut(s) 278, 559, 565
MmeI TCCRAC 1 cut(s) 51
Mox20I TGGCCA 3 cut(s) 278, 559, 565
MscI TGGCCA 3 cut(s) 278, 559, 565
Msp20I TGGCCA 3 cut(s) 278, 559, 565
MspA1I CMGCKG 2 cut(s) 120, 236
MspI CCGG 1 cut(s) 51
MunI CAATTG 1 cut(s) 198
MvnI CGCG 3 cut(s) 110, 224, 236
MwoI GCNNNNNNNGC 4 cut(s) 41, 142, 233, 509
NcoI CCATGG 1 cut(s) 560
NlaIII CATG 2 cut(s) 274, 564
NlaIV GGNNCC 2 cut(s) 55, 265
NmuCI GTSAC 1 cut(s) 338
PceI AGGCCT 1 cut(s) 411
Pfl23II CGTACG 1 cut(s) 363
PflFI GACNNNGTC 1 cut(s) 244
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 7 cut(s) 112, 122, 147, 150, 167, 226, 229
Ppu21I YACGTR 1 cut(s) 367
PspLI CGTACG 1 cut(s) 363
PspN4I GGNNCC 2 cut(s) 55, 265
PspPI GGNCC 2 cut(s) 48, 445
PsyI GACNNNGTC 1 cut(s) 244
PvuII CAGCTG 1 cut(s) 120
RsaI GTAC 3 cut(s) 62, 365, 473
RsaNI GTAC 3 cut(s) 61, 364, 472
SacII CCGCGG 1 cut(s) 237
SatI GCNGC 7 cut(s) 111, 121, 146, 149, 166, 225, 228
Sau96I GGNCC 2 cut(s) 48, 445
ScaI AGTACT 1 cut(s) 473
SduI GDGCHC 2 cut(s) 268, 321
SetI ASST 8 cut(s) 50, 78, 122, 248, 357, 362, 369, 531
SfaNI GCATC 2 cut(s) 132, 209
Sfr303I CCGCGG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 237
SinI GGWCC 2 cut(s) 48, 445
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 2 cut(s) 198, 398
SseBI AGGCCT 1 cut(s) 411
SsiI CCGC 6 cut(s) 110, 145, 165, 224, 234, 236
SspI AATATT 2 cut(s) 22, 297
SspMI CTAG 1 cut(s) 104
StuI AGGCCT 1 cut(s) 411
StyI CCWWGG 3 cut(s) 487, 525, 560
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 2 cut(s) 248, 369
TaqI TCGA 1 cut(s) 14
TasI AATT 2 cut(s) 198, 398
TatI WGTACW 1 cut(s) 471
TauI GCSGC 4 cut(s) 113, 148, 168, 227
TscAI CASTG 4 cut(s) 165, 288, 321, 421
TseFI GTSAC 1 cut(s) 338
TseI GCWGC 3 cut(s) 120, 148, 227
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 4 cut(s) 165, 288, 321, 421
Tth111I GACNNNGTC 1 cut(s) 244
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 48, 445
XspI CTAG 1 cut(s) 104
ZraI GACGTC 1 cut(s) 246
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.