FvH4_6g01430

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017318
Physical Location & Seq
Reverse (-)
810189 .. 810749
561 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01430.t1

Sequence Viewer

Length: 561 bp
ATGTTGAACATCAACGAGTTGCGCTGGCATCTGTCTCCTGCTCTGTTAGAATTTGGGATCACAGAAGATAGTGACTACCACAAAGTGATAGTGATTGACATTGGAAATGTGAGCCAGAGATTAGGCCGAGACGTTATTCACAAAAAGGAGAGTCGAGGGCTAATCACCTTGCAAGTTTCTATTTCAAAAGAACATAATATGTTTCGTTGTGAGAATTGTCTGACCCAGAGGGTTGAAAGGGAGTCGATAATTGAGGCTGAGGACTCAGAAAGAGTAATGGTACCAGCGAGCGAGTCATCAATCAAGAAGCTACTGAAGAAGAGGGTTAGGGTTGAAGAGGGAGAGAGTTGTAGTGTTTGCTTGGAGGAGTTTAGGGCTGGGACTTATGAGACAAGCATGGACTGCTCACATGTGTTTCATAGGGAGTGCATAGGAAAATGGATGACACAGAGTCACTATTGTCCTGTCTGCAGGTATGAGATGCCTACTGATAATGATGAAGGAGGCTTTCACCAAGATGACGAATTAGTCGATCGTTTCGGTTTAGGATATAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

187

Amino Acids

21.56

Weight (kDa)

5.4

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 115 - 158 1.4e-07 RING-H2 zinc finger domain
zf-RING_2 PF13639 116 - 158 2.3e-13 Ring finger domain
zf-C3HC4_2 PF13923 117 - 157 2.2e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 117 - 155 2e-08 RING-type zinc-finger
zf-RING_11 PF17123 117 - 144 5.6e-08 RING-like zinc finger
zf-C3HC4 PF00097 117 - 157 1.9e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01430
malus_domestica MD13G1076400.v1.1
prunus_persica Prupe.1G270100_v2.0.a1 Prupe.1G270300_v2.0.a1 Prupe.2G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449061
rosa_laevigata RLG00000025857
rosa_multiflora Rmu_co8511853.1_g000002 Rmu_sc0003116.1_g000007
rosa_roxburghii Rroxscaffold_6G00427170
rosa_samantha Rh3BG016400 Rh3CG015400
rosa_wichuraiana Rw3G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 462
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AclWI GGATC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 335
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 1 cut(s) 282
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 4 cut(s) 7, 186, 236, 335
AhdI GACNNNNNGTC 1 cut(s) 450
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
Alw26I GTCTC 3 cut(s) 39, 123, 383
AlwI GGATC 1 cut(s) 65
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 50
Asp718I GGTACC 1 cut(s) 280
AspLEI GCGC 1 cut(s) 24
AsuHPI GGTGA 2 cut(s) 157, 503
BanI GGYRCC 1 cut(s) 280
BbvCI CCTCAGC 1 cut(s) 258
BcoDI GTCTC 3 cut(s) 39, 123, 383
BfmI CTRYAG 1 cut(s) 469
BfuAI ACCTGC 1 cut(s) 462
BmeRI GACNNNNNGTC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 2 cut(s) 37, 471
Bpu10I CCTNAGC 1 cut(s) 258
BseGI GGATG 1 cut(s) 447
BseMII CTCAG 2 cut(s) 249, 279
BseRI GAGGAG 1 cut(s) 380
BseYI CCCAGC 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 280
BsiEI CGRYCG 1 cut(s) 535
BslFI GGGAC 1 cut(s) 394
BsmAI GTCTC 3 cut(s) 39, 123, 383
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 2 cut(s) 57, 532
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 250, 278
BspLI GGNNCC 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 473
BspMI ACCTGC 1 cut(s) 462
BspPI GGATC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 280
BssMI GATC 2 cut(s) 57, 532
Bst6I CTCTTC 2 cut(s) 314, 330
BstAPI GCANNNNNTGC 1 cut(s) 402
BstC8I GCNNGC 2 cut(s) 26, 289
BstDEI CTNAG 2 cut(s) 258, 265
BstF5I GGATG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 2 cut(s) 60, 535
BstMAI GTCTC 3 cut(s) 39, 123, 383
BstMBI GATC 2 cut(s) 57, 532
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNSI RCATGY 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 469
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 1 cut(s) 447
BveI ACCTGC 1 cut(s) 462
Cac8I GCNNGC 2 cut(s) 26, 289
CfoI GCGC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 281
CviAII CATG 2 cut(s) 397, 410
CviJI RGCY 7 cut(s) 114, 126, 160, 257, 310, 377, 507
CviKI_1 RGCY 7 cut(s) 114, 126, 160, 257, 310, 377, 507
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 2 cut(s) 258, 265
DpnI GATC 2 cut(s) 59, 534
DpnII GATC 2 cut(s) 57, 532
DraIII CACNNNGTG 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 527
DriI GACNNNNNGTC 1 cut(s) 450
DseDI GACNNNNNNGTC 1 cut(s) 527
Eam1104I CTCTTC 2 cut(s) 314, 330
Eam1105I GACNNNNNGTC 1 cut(s) 450
EarI CTCTTC 2 cut(s) 314, 330
Eco57I CTGAAG 1 cut(s) 335
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 2 cut(s) 400, 413
FaiI YATR 9 cut(s) 195, 200, 387, 398, 411, 420, 431, 477, 552
FaqI GGGAC 1 cut(s) 394
FatI CATG 2 cut(s) 396, 409
FokI GGATG 1 cut(s) 454
GlaI GCGC 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 126
HhaI GCGC 1 cut(s) 24
Hin1II CATG 2 cut(s) 400, 413
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HinfI GANTC 5 cut(s) 151, 242, 263, 293, 451
HphI GGTGA 2 cut(s) 157, 503
Hpy188I TCNGA 2 cut(s) 222, 268
Hpy188III TCNNGA 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 494
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 172, 429, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 2 cut(s) 258, 265
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 2 cut(s) 400, 413
HspAI GCGC 1 cut(s) 22
KpnI GGTACC 1 cut(s) 284
Kzo9I GATC 2 cut(s) 57, 532
LpnPI CCDG 8 cut(s) 10, 51, 128, 239, 297, 363, 457, 477
LweI GCATC 2 cut(s) 37, 471
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 71, 452
MalI GATC 2 cut(s) 59, 534
MboI GATC 2 cut(s) 57, 532
MboII GAAGA 4 cut(s) 77, 328, 331, 347
MluCI AATT 4 cut(s) 50, 214, 249, 524
MlyI GAGTC 5 cut(s) 160, 251, 257, 302, 460
MnlI CCTC 8 cut(s) 149, 222, 247, 253, 315, 331, 358, 497
MslI CAYNNNNRTG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 2 cut(s) 57, 532
NlaIII CATG 2 cut(s) 400, 413
NlaIV GGNNCC 1 cut(s) 282
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 71, 452
NspI RCATGY 1 cut(s) 413
PciI ACATGT 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 528
Ple19I CGATCG 1 cut(s) 535
PleI GAGTC 5 cut(s) 159, 250, 257, 301, 459
PpsI GAGTC 5 cut(s) 159, 250, 257, 301, 459
PscI ACATGT 1 cut(s) 409
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 282
PstI CTGCAG 1 cut(s) 473
PvuI CGATCG 1 cut(s) 535
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 516
Sau3AI GATC 2 cut(s) 57, 532
SchI GAGTC 5 cut(s) 160, 251, 257, 302, 460
SetI ASST 4 cut(s) 135, 170, 312, 476
SfaNI GCATC 2 cut(s) 37, 471
SfcI CTRYAG 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 516
Sse9I AATT 4 cut(s) 50, 214, 249, 524
TaiI ACGT 1 cut(s) 135
TaqI TCGA 3 cut(s) 154, 245, 531
TasI AATT 4 cut(s) 50, 214, 249, 524
TseFI GTSAC 2 cut(s) 71, 452
Tsp45I GTSAC 2 cut(s) 71, 452
TspDTI ATGAA 2 cut(s) 407, 513
XapI RAATTY 1 cut(s) 50
XceI RCATGY 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.