Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003116.1

Orthogroup ID

OG0017318

Physical Location & Seq

Genomic Coordinates Forward (+)

19510 .. 20271

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003116.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atggatcaagaagtcacttcagagaacaatcgcttcaaacattctgttaatttcgtcaaacccaccaaacgtcgccggagtctaccttcaccggctcaacttcaggtccacttcgtatgccatacgctccaccaatacttcaataaattgtcatgtagtagtgaaaattctacccacatccactatcttgaggagacctcggaagaaacttgccaatttgatctgcgcgcagtattgaacctcgacgatttgctctcgaatctctctccaattctgtcagaatttggaatcacagaagatagtgacgaccacagacagatagtgagtaacattagattttcgggtcagagatttggccgagacgtaattcacaaagaggagagtcgagggttattcaccttggaagtttctatttcaagagaacataatatgtatcgttgcgagagttgtctgctcgacagggttgtaagggagtcgataataatggcagaggagtccgaaagagtaacagtgcccgcaagccagtcatcgatcaagaagctactgaagaagagggttagggttgaagagggagaattttgtagtgtttgcttggaggagtttagggttgggacttatgagacgagcatggactgttcacatgtgtttcatagggagtgcatagagagatggctgagacagagtcactattgtcctgtctgccggtatgagatgcctactgattatgatagaggaggatttcacgaggatgatgaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

253

Amino Acids

29.74

Weight (kDa)

5.64

Isoelectric Point (pI)

75.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017318)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01430
malus_domestica	MD13G1076400.v1.1
prunus_persica	Prupe.1G270100_v2.0.a1 Prupe.1G270300_v2.0.a1 Prupe.2G025300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449061
rosa_laevigata	RLG00000025857
rosa_multiflora	Rmu_co8511853.1_g000002 Rmu_sc0003116.1_g000007
rosa_roxburghii	Rroxscaffold_6G00427170
rosa_samantha	Rh3BG016400 Rh3CG015400
rosa_wichuraiana	Rw3G001220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	1 cut(s)	228
AciI	CCGC	1 cut(s)	516
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	355
AcsI	RAATTY	3 cut(s)	166, 281, 575
AcuI	CTGAAG	2 cut(s)	86, 566
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	5 cut(s)	37, 142, 238, 417, 566
AluBI	AGCT	1 cut(s)	541
AluI	AGCT	1 cut(s)	541
Alw26I	GTCTC	4 cut(s)	188, 354, 614, 670
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	355
ApoI	RAATTY	3 cut(s)	166, 281, 575
AspLEI	GCGC	2 cut(s)	228, 230
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	2 cut(s)	81, 388
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	516
BauI	CACGAG	1 cut(s)	743
BccI	CCATC	1 cut(s)	663
BcoDI	GTCTC	4 cut(s)	188, 354, 614, 670
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	702
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpuEI	CTTGAG	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	530
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	198, 399
Bse118I	RCCGGY	2 cut(s)	91, 702
Bse1I	ACTGG	1 cut(s)	523
BseCI	ATCGAT	1 cut(s)	530
BseDI	CCNNGG	2 cut(s)	198, 399
BseGI	GGATG	2 cut(s)	177, 754
BseMII	CTCAG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	523
BsePI	GCGCGC	1 cut(s)	226
BseRI	GAGGAG	5 cut(s)	206, 392, 506, 611, 747
BseSI	GKGCMC	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	357
BshVI	ATCGAT	1 cut(s)	530
BsiSI	CCGG	3 cut(s)	76, 92, 703
BslFI	GGGAC	1 cut(s)	625
BsmAI	GTCTC	4 cut(s)	188, 354, 614, 670
BsmBI	CGTCTC	2 cut(s)	354, 614
BsmFI	GGGAC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	357
Bso31I	GGTCTC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	4, 220, 531
BspACI	CCGC	1 cut(s)	516
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	666
BspDI	ATCGAT	1 cut(s)	530
BspFNI	CGCG	1 cut(s)	228
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	2 cut(s)	91, 702
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	2 cut(s)	91, 702
BssECI	CCNNGG	2 cut(s)	198, 399
BssHII	GCGCGC	1 cut(s)	226
BssMI	GATC	3 cut(s)	4, 220, 531
BssSI	CACGAG	1 cut(s)	743
BssT1I	CCWWGG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	743
Bst4CI	ACNGT	2 cut(s)	511, 635
Bst6I	CTCTTC	2 cut(s)	545, 561
BstC8I	GCNNGC	3 cut(s)	228, 516, 520
BstDEI	CTNAG	1 cut(s)	674
BstF5I	GGATG	2 cut(s)	177, 754
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	228, 230
BstKTI	GATC	3 cut(s)	7, 223, 534
BstMAI	GTCTC	4 cut(s)	188, 354, 614, 670
BstMBI	GATC	3 cut(s)	4, 220, 531
BstNSI	RCATGY	1 cut(s)	644
BstSLI	GKGCMC	1 cut(s)	516
BstUI	CGCG	1 cut(s)	228
Bsu15I	ATCGAT	1 cut(s)	530
BsuRI	GGCC	1 cut(s)	357
BsuTUI	ATCGAT	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	177, 754
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	3 cut(s)	228, 516, 520
CfoI	GCGC	2 cut(s)	228, 230
Cfr10I	RCCGGY	2 cut(s)	91, 702
Cfr13I	GGNCC	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	530
CviAII	CATG	3 cut(s)	153, 628, 641
CviJI	RGCY	5 cut(s)	95, 357, 522, 541, 673
CviKI_1	RGCY	5 cut(s)	95, 357, 522, 541, 673
DdeI	CTNAG	1 cut(s)	674
DpnI	GATC	3 cut(s)	6, 222, 533
DpnII	GATC	3 cut(s)	4, 220, 531
EaeI	YGGCCR	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	545, 561
EarI	CTCTTC	2 cut(s)	545, 561
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	2 cut(s)	86, 566
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	2 cut(s)	354, 614
FaeI	CATG	3 cut(s)	156, 631, 644
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	3 cut(s)	152, 627, 640
FauI	CCCGC	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	82
FokI	GGATG	1 cut(s)	164
GlaI	GCGC	2 cut(s)	227, 229
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	3 cut(s)	76, 92, 703
HhaI	GCGC	2 cut(s)	228, 230
Hin1II	CATG	3 cut(s)	156, 631, 644
Hin6I	GCGC	2 cut(s)	226, 228
HinP1I	GCGC	2 cut(s)	226, 228
HinfI	GANTC	7 cut(s)	79, 259, 288, 382, 473, 494, 682
HpaII	CCGG	3 cut(s)	76, 92, 703
HphI	GGTGA	2 cut(s)	81, 388
Hpy166II	GTNNAC	3 cut(s)	83, 109, 638
Hpy188I	TCNGA	5 cut(s)	22, 202, 280, 348, 499
Hpy188III	TCNNGA	6 cut(s)	8, 188, 256, 417, 535, 743
Hpy8I	GTNNAC	3 cut(s)	83, 109, 638
Hpy99I	CGWCG	2 cut(s)	75, 248
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	511, 635
HpyCH4IV	ACGT	2 cut(s)	70, 363
HpyCH4V	TGCA	1 cut(s)	660
HpyF3I	CTNAG	1 cut(s)	674
HpySE526I	ACGT	2 cut(s)	70, 363
Hsp92II	CATG	3 cut(s)	156, 631, 644
HspAI	GCGC	2 cut(s)	226, 228
Kzo9I	GATC	3 cut(s)	4, 220, 531
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	89, 89, 105, 445, 536, 708, 716
LweI	GCATC	1 cut(s)	702
MaeII	ACGT	2 cut(s)	70, 363
MaeIII	GTNAC	5 cut(s)	13, 302, 326, 505, 683
MalI	GATC	3 cut(s)	6, 222, 533
MboI	GATC	3 cut(s)	4, 220, 531
MboII	GAAGA	5 cut(s)	215, 308, 559, 562, 578
MhlI	GDGCHC	1 cut(s)	516
MluCI	AATT	8 cut(s)	49, 146, 166, 215, 270, 281, 366, 575
MlyI	GAGTC	5 cut(s)	88, 391, 482, 503, 691
MseI	TTAA	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	3 cut(s)	76, 92, 703
MvnI	CGCG	1 cut(s)	228
NdeII	GATC	3 cut(s)	4, 220, 531
NlaIII	CATG	3 cut(s)	156, 631, 644
NmeAIII	GCCGAG	1 cut(s)	383
NmuCI	GTSAC	3 cut(s)	13, 302, 683
NspI	RCATGY	1 cut(s)	644
PauI	GCGCGC	1 cut(s)	226
PciI	ACATGT	1 cut(s)	640
PfeI	GAWTC	2 cut(s)	259, 288
PflFI	GACNNNGTC	1 cut(s)	681
PleI	GAGTC	5 cut(s)	87, 390, 481, 502, 690
PpsI	GAGTC	5 cut(s)	87, 390, 481, 502, 690
PscI	ACATGT	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	681
PteI	GCGCGC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	1 cut(s)	48
Sau3AI	GATC	3 cut(s)	4, 220, 531
Sau96I	GGNCC	1 cut(s)	106
SchI	GAGTC	5 cut(s)	88, 391, 482, 503, 691
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	8 cut(s)	73, 88, 108, 200, 243, 366, 401, 543
SfaNI	GCATC	1 cut(s)	702
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	8 cut(s)	49, 146, 166, 215, 270, 281, 366, 575
SsiI	CCGC	1 cut(s)	516
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	2 cut(s)	511, 635
TaiI	ACGT	2 cut(s)	73, 366
TaqI	TCGA	6 cut(s)	243, 257, 385, 456, 476, 530
TasI	AATT	8 cut(s)	49, 146, 166, 215, 270, 281, 366, 575
TfiI	GAWTC	2 cut(s)	259, 288
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	3 cut(s)	13, 302, 683
Tsp45I	GTSAC	3 cut(s)	13, 302, 683
TspDTI	ATGAA	1 cut(s)	638
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	106
XapI	RAATTY	3 cut(s)	166, 281, 575
XceI	RCATGY	1 cut(s)	644
XmiI	GTMKAC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.