Rroxscaffold_6G00427170

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017318
Physical Location & Seq
Reverse (-)
47801044 .. 47801808
765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427170.1

Sequence Viewer

Length: 765 bp
ATGGATCAAGAAGTCACTTCAGAGAACAATCGCTTCAAACATTCTGTTAATTTCGCCAAACCCACCAAAAGTCGCCGGAGTCTACCTTCACCGGCTCAACTTCAGGTCCATTTTGTATGCCATACGCTCCACCAATACTTCAATAAATTGTCATGTAGTAGTGAAAATTCTACCCGCATCCACTATCTTGAGGAGACCTCGGAAGAAACTTGCCAATTTGATCTGCGCGCAGTATTGAACCTCGACGATTTGCTCTCGAATCTCTCTCCAATTCTGTCAGAATTTGGAATCACAGAAGAAGATAGTGACGACCACAGACAGATAGTGAGTAACATTAGATTTTCGGGTCAGAGATTTGGCCGAGACGTAATTCACAAAGAGGAGAGTCGAGGGTTATTCACCTTGGAAGTTTCTATTTCAAGAGAACATAATATGTATCGTTGCGAGAGTTGTCTGCTCGAGAGGGTTGCAAGGGAGTCGATAATAATGGCAGAGGAGTCAGAAAGAGTAACAGTGCCCGCAAGCCAGTCATCGATCAAGAAGCTACTGAAGAAGAGGGTTAGGGTTGAAGAGGGAGAATTTTGTAGTGTTTGCTTGGAGGAGTTTAGGGTTGGGACTTATGAGACGAGCATGGACTGTTCACATGTGTTTCATAGGGAGTGCATAGAGAGATGGCTGAGACAGAGTCACTATTGTCCTGTCTGCAGGTATGAGATGCCTACTGATGATGATAGAGGAGGATTTCACGAGAATGATGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

254

Amino Acids

29.73

Weight (kDa)

5.5

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 195 - 236 1.5e-13 Ring finger domain
zf-C3HC4_2 PF13923 195 - 235 9.2e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 195 - 233 1.1e-08 RING-type zinc-finger
zf-C3HC4 PF00097 195 - 235 4.5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 195 - 222 9.1e-08 RING-like zinc finger
zf-rbx1 PF12678 211 - 236 2.4e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01430
malus_domestica MD13G1076400.v1.1
prunus_persica Prupe.1G270100_v2.0.a1 Prupe.1G270300_v2.0.a1 Prupe.2G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449061
rosa_laevigata RLG00000025857
rosa_multiflora Rmu_co8511853.1_g000002 Rmu_sc0003116.1_g000007
rosa_roxburghii Rroxscaffold_6G00427170
rosa_samantha Rh3BG016400 Rh3CG015400
rosa_wichuraiana Rw3G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 696
AccI GTMKAC 1 cut(s) 82
AccII CGCG 1 cut(s) 228
AciI CCGC 2 cut(s) 175, 519
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 358
AcsI RAATTY 3 cut(s) 166, 281, 578
AcuI CTGAAG 2 cut(s) 86, 569
AflIII ACRYGT 1 cut(s) 643
AgsI TTSAA 5 cut(s) 37, 142, 238, 420, 569
AluBI AGCT 1 cut(s) 544
AluI AGCT 1 cut(s) 544
Alw26I GTCTC 4 cut(s) 188, 357, 617, 673
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 1 cut(s) 358
ApoI RAATTY 3 cut(s) 166, 281, 578
AspLEI GCGC 2 cut(s) 228, 230
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 2 cut(s) 81, 391
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 106
BaeGI GKGCMC 1 cut(s) 519
BauI CACGAG 1 cut(s) 746
BccI CCATC 1 cut(s) 666
BcgI CGANNNNNNTGC 4 cut(s) 449, 459, 483, 493
BcoDI GTCTC 4 cut(s) 188, 357, 617, 673
BfmI CTRYAG 1 cut(s) 703
BfuAI ACCTGC 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 106
BmsI GCATC 2 cut(s) 186, 705
BplI GAGNNNNNCTC 2 cut(s) 182, 214
BpuEI CTTGAG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 533
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 198, 402
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 526
BseCI ATCGAT 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 198, 402
BseGI GGATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 668
BseNI ACTGG 1 cut(s) 526
BsePI GCGCGC 1 cut(s) 226
BseRI GAGGAG 5 cut(s) 206, 395, 509, 614, 750
BseSI GKGCMC 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 228
BshFI GGCC 1 cut(s) 360
BshVI ATCGAT 1 cut(s) 533
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 2 cut(s) 76, 92
BslFI GGGAC 1 cut(s) 628
BsmAI GTCTC 4 cut(s) 188, 357, 617, 673
BsmBI CGTCTC 2 cut(s) 357, 617
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 1 cut(s) 360
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 3 cut(s) 4, 220, 534
BspACI CCGC 2 cut(s) 175, 519
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 669
BspDI ATCGAT 1 cut(s) 533
BspFNI CGCG 1 cut(s) 228
BspMAI CTGCAG 1 cut(s) 707
BspMI ACCTGC 1 cut(s) 696
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 1 cut(s) 526
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 198, 402
BssHII GCGCGC 1 cut(s) 226
BssMI GATC 3 cut(s) 4, 220, 534
BssSI CACGAG 1 cut(s) 746
BssT1I CCWWGG 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 746
Bst4CI ACNGT 2 cut(s) 514, 638
Bst6I CTCTTC 2 cut(s) 548, 564
BstC8I GCNNGC 3 cut(s) 228, 519, 523
BstDEI CTNAG 1 cut(s) 677
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 1 cut(s) 228
BstHHI GCGC 2 cut(s) 228, 230
BstKTI GATC 3 cut(s) 7, 223, 537
BstMAI GTCTC 4 cut(s) 188, 357, 617, 673
BstMBI GATC 3 cut(s) 4, 220, 534
BstNSI RCATGY 1 cut(s) 647
BstSFI CTRYAG 1 cut(s) 703
BstSLI GKGCMC 1 cut(s) 519
BstUI CGCG 1 cut(s) 228
Bsu15I ATCGAT 1 cut(s) 533
BsuRI GGCC 1 cut(s) 360
BsuTUI ATCGAT 1 cut(s) 533
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 519
BveI ACCTGC 1 cut(s) 696
Cac8I GCNNGC 3 cut(s) 228, 519, 523
CfoI GCGC 2 cut(s) 228, 230
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 106
ClaI ATCGAT 1 cut(s) 533
CviAII CATG 3 cut(s) 153, 631, 644
CviJI RGCY 5 cut(s) 95, 360, 525, 544, 676
CviKI_1 RGCY 5 cut(s) 95, 360, 525, 544, 676
DdeI CTNAG 1 cut(s) 677
DpnI GATC 3 cut(s) 6, 222, 536
DpnII GATC 3 cut(s) 4, 220, 534
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 548, 564
EarI CTCTTC 2 cut(s) 548, 564
Eco130I CCWWGG 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 2 cut(s) 86, 569
Eco88I CYCGRG 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 2 cut(s) 357, 617
FaeI CATG 3 cut(s) 156, 634, 647
FaqI GGGAC 1 cut(s) 628
FatI CATG 3 cut(s) 152, 630, 643
FauI CCCGC 2 cut(s) 182, 526
FblI GTMKAC 1 cut(s) 82
FokI GGATG 1 cut(s) 164
GlaI GCGC 2 cut(s) 227, 229
HaeIII GGCC 1 cut(s) 360
HapII CCGG 2 cut(s) 76, 92
HhaI GCGC 2 cut(s) 228, 230
Hin1II CATG 3 cut(s) 156, 634, 647
Hin6I GCGC 2 cut(s) 226, 228
HinP1I GCGC 2 cut(s) 226, 228
HinfI GANTC 7 cut(s) 79, 259, 288, 385, 476, 497, 685
HpaII CCGG 2 cut(s) 76, 92
HphI GGTGA 2 cut(s) 81, 391
Hpy166II GTNNAC 2 cut(s) 83, 641
Hpy188I TCNGA 5 cut(s) 22, 202, 280, 351, 502
Hpy188III TCNNGA 7 cut(s) 8, 188, 256, 420, 460, 538, 746
Hpy8I GTNNAC 2 cut(s) 83, 641
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 514, 638
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 470, 663, 705
HpyF3I CTNAG 1 cut(s) 677
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 3 cut(s) 156, 634, 647
HspAI GCGC 2 cut(s) 226, 228
Kzo9I GATC 3 cut(s) 4, 220, 534
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 89, 89, 105, 539, 691, 711
LweI GCATC 2 cut(s) 186, 705
MaeII ACGT 1 cut(s) 366
MaeIII GTNAC 5 cut(s) 13, 305, 329, 508, 686
MalI GATC 3 cut(s) 6, 222, 536
MboI GATC 3 cut(s) 4, 220, 534
MboII GAAGA 6 cut(s) 215, 308, 311, 562, 565, 581
MhlI GDGCHC 1 cut(s) 519
MluCI AATT 8 cut(s) 49, 146, 166, 215, 270, 281, 369, 578
MlyI GAGTC 5 cut(s) 88, 394, 485, 506, 694
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 2 cut(s) 76, 92
MvnI CGCG 1 cut(s) 228
NdeII GATC 3 cut(s) 4, 220, 534
NlaIII CATG 3 cut(s) 156, 634, 647
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 3 cut(s) 13, 305, 686
NspI RCATGY 1 cut(s) 647
PaeR7I CTCGAG 1 cut(s) 458
PauI GCGCGC 1 cut(s) 226
PciI ACATGT 1 cut(s) 643
PfeI GAWTC 2 cut(s) 259, 288
PflFI GACNNNGTC 1 cut(s) 684
PleI GAGTC 5 cut(s) 87, 393, 484, 505, 693
PpsI GAGTC 5 cut(s) 87, 393, 484, 505, 693
PscI ACATGT 1 cut(s) 643
PspPI GGNCC 1 cut(s) 106
PstI CTGCAG 1 cut(s) 707
PsyI GACNNNGTC 1 cut(s) 684
PteI GCGCGC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 3 cut(s) 4, 220, 534
Sau96I GGNCC 1 cut(s) 106
SchI GAGTC 5 cut(s) 88, 394, 485, 506, 694
SduI GDGCHC 1 cut(s) 519
SetI ASST 8 cut(s) 88, 108, 200, 243, 369, 404, 546, 710
SfaNI GCATC 2 cut(s) 186, 705
SfcI CTRYAG 1 cut(s) 703
Sfr274I CTCGAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 750
SmlI CTYRAG 2 cut(s) 188, 458
SmoI CTYRAG 2 cut(s) 188, 458
Sse9I AATT 8 cut(s) 49, 146, 166, 215, 270, 281, 369, 578
SsiI CCGC 2 cut(s) 175, 519
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 514, 638
TaiI ACGT 1 cut(s) 369
TaqI TCGA 6 cut(s) 243, 257, 388, 459, 479, 533
TasI AATT 8 cut(s) 49, 146, 166, 215, 270, 281, 369, 578
TfiI GAWTC 2 cut(s) 259, 288
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 3 cut(s) 13, 305, 686
Tsp45I GTSAC 3 cut(s) 13, 305, 686
TspDTI ATGAA 1 cut(s) 641
TspRI CASTG 1 cut(s) 519
Tth111I GACNNNGTC 1 cut(s) 684
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 3 cut(s) 166, 281, 578
XceI RCATGY 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.