Prupe.2G025300_v2.0.a1

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0017318
Physical Location & Seq
Reverse (-)
2516989 .. 2517783
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G025300.1

Sequence Viewer

Length: 795 bp
ATGGAAGACTTCCCTGCCATCCATCACGACCAACAACTCTTTCGCTTTCGCATCCAAGACATTACTGCACAATTACACAACCTTCATCATGTTCATAATCAGAGCCGTTCATCAGTACAGCCGGTTCAGTTTCATGTTAAGCTTGTGCATCAGTCCCAATACAAATACATCAATCATTCCTTAAACACTGAAACCACTGTCATAGAATTTACGAAAACAAAGACAGCAAACCGCCGATTCGACATGGACATGTTAAAGAATTACTGCGAGGCGCACTTGATTCTTTCTAGCATGCTGGAGATAGTTGGAATCAATAGAAGGGATGCGTTTAGTATACATATTGTGGAGCAGATTATAGAACAGGGTCTCCTAATTGGCAGTAGGGTTAGCAACGTGGGTCATAAGGTATTGGGGTTGTGCGTTCACATGAAAAAAGTGCACCTCAAGCATCGTTATGAGCCGTGCATGCAACTAATAGAAAGAATATTAATGAGCAATGGTATTAACGAGGGCATGGTCCCGGCGAGCGATTCAGCGATTGAGAAGGTTCTAAAGAGGGTTAGAGTGGGTGATGGGGACGAGGAGGAGGAAGAGGGGCGTCGAGAGAGAAAAAGAAGGCAAATTTGTGCAAGTGAAAGTGATAGTTGCACTGTTTGCATGGAAGAGTTTAATGGAGGATCAGAAATCGCTTGCATGCCTTGCTCACATTTGTTTCATGAAAAGTGCATAGTGACATGGCTCAAACAAAGCCATTATTGTCCTGTTTGCCGATTTGAAGTGCCTACTGATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

265

Amino Acids

30.52

Weight (kDa)

6.8

Isoelectric Point (pI)

72.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01430
malus_domestica MD13G1076400.v1.1
prunus_persica Prupe.1G270100_v2.0.a1 Prupe.1G270300_v2.0.a1 Prupe.2G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449061
rosa_laevigata RLG00000025857
rosa_multiflora Rmu_co8511853.1_g000002 Rmu_sc0003116.1_g000007
rosa_roxburghii Rroxscaffold_6G00427170
rosa_samantha Rh3BG016400 Rh3CG015400
rosa_wichuraiana Rw3G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 334
AciI CCGC 1 cut(s) 232
AclWI GGATC 1 cut(s) 685
AcsI RAATTY 2 cut(s) 206, 621
AcyI GRCGYC 1 cut(s) 598
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 788
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 1 cut(s) 776
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 1 cut(s) 142
AluI AGCT 1 cut(s) 142
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 1 cut(s) 371
Alw44I GTGCAC 1 cut(s) 437
AlwI GGATC 1 cut(s) 685
ApaLI GTGCAC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 206, 621
AseI ATTAAT 1 cut(s) 488
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 517
AsuC2I CCSGG 1 cut(s) 521
AsuHPI GGTGA 1 cut(s) 581
AvaII GGWCC 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 441
BccI CCATC 4 cut(s) 26, 30, 566, 782
BceAI ACGGC 2 cut(s) 90, 445
BcnI CCSGG 1 cut(s) 521
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 521
Bme18I GGWCC 1 cut(s) 517
BmgT120I GGNCC 1 cut(s) 517
BmiI GGNNCC 1 cut(s) 519
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 4 cut(s) 60, 157, 313, 457
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 521
BsaHI GRCGYC 1 cut(s) 598
BsaI GGTCTC 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 1 cut(s) 788
Bse118I RCCGGY 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 502
BseGI GGATG 3 cut(s) 18, 51, 328
BseLI CCNNNNNNNGG 1 cut(s) 788
BseMI GCAATG 1 cut(s) 502
BseRI GAGGAG 2 cut(s) 596, 599
BseSI GKGCMC 1 cut(s) 441
BsgI GTGCAG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 441
BsiSI CCGG 2 cut(s) 122, 521
BslFI GGGAC 3 cut(s) 139, 503, 590
BslI CCNNNNNNNGG 1 cut(s) 788
BsmAI GTCTC 1 cut(s) 371
BsmFI GGGAC 3 cut(s) 139, 503, 590
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 1 cut(s) 677
BspACI CCGC 1 cut(s) 232
BspHI TCATGA 1 cut(s) 715
BspLI GGNNCC 1 cut(s) 519
BspPI GGATC 1 cut(s) 685
BspTNI GGTCTC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 502
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssMI GATC 1 cut(s) 677
BssNAI GTATAC 1 cut(s) 335
BssNI GRCGYC 1 cut(s) 598
Bst1107I GTATAC 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 199, 652
Bst6I CTCTTC 2 cut(s) 585, 657
BstACI GRCGYC 1 cut(s) 598
BstAPI GCANNNNNTGC 2 cut(s) 654, 699
BstC8I GCNNGC 5 cut(s) 293, 467, 526, 691, 695
BstF5I GGATG 3 cut(s) 18, 51, 328
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 1 cut(s) 680
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 1 cut(s) 677
BstMWI GCNNNNNNNGC 4 cut(s) 445, 466, 654, 699
BstNSI RCATGY 4 cut(s) 253, 295, 469, 697
BstSCI CCNGG 1 cut(s) 519
BstSLI GKGCMC 1 cut(s) 441
BstV2I GAAGAC 1 cut(s) 12
BstZ17I GTATAC 1 cut(s) 335
BtsCI GGATG 3 cut(s) 18, 51, 328
BtsIMutI CAGTG 3 cut(s) 186, 195, 648
Cac8I GCNNGC 5 cut(s) 293, 467, 526, 691, 695
CciI TCATGA 1 cut(s) 715
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 517
CseI GACGC 1 cut(s) 587
Csp6I GTAC 1 cut(s) 116
CviJI RGCY 6 cut(s) 105, 121, 142, 460, 739, 750
CviKI_1 RGCY 6 cut(s) 105, 121, 142, 460, 739, 750
CviQI GTAC 1 cut(s) 116
DpnI GATC 1 cut(s) 679
DpnII GATC 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 585, 657
EarI CTCTTC 2 cut(s) 585, 657
Eco31I GGTCTC 1 cut(s) 371
Eco47I GGWCC 1 cut(s) 517
FaqI GGGAC 3 cut(s) 139, 503, 590
FblI GTMKAC 1 cut(s) 334
FokI GGATG 3 cut(s) 5, 38, 335
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 317
HapII CCGG 2 cut(s) 122, 521
HgaI GACGC 1 cut(s) 587
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 598
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 4 cut(s) 237, 280, 309, 530
HpaII CCGG 2 cut(s) 122, 521
HphI GGTGA 1 cut(s) 581
Hpy166II GTNNAC 3 cut(s) 335, 424, 439
Hpy188I TCNGA 2 cut(s) 102, 682
Hpy188III TCNNGA 3 cut(s) 26, 602, 716
Hpy8I GTNNAC 3 cut(s) 335, 424, 439
Hpy99I CGWCG 1 cut(s) 603
HpyAV CCTTC 4 cut(s) 92, 312, 538, 609
HpyCH4III ACNGT 2 cut(s) 199, 652
HpyCH4IV ACGT 1 cut(s) 393
HpyF10VI GCNNNNNNNGC 4 cut(s) 445, 466, 654, 699
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 1 cut(s) 598
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 677
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 27, 135, 281, 347, 534, 774
LweI GCATC 4 cut(s) 60, 157, 313, 457
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 730
MalI GATC 1 cut(s) 679
MboI GATC 1 cut(s) 677
MboII GAAGA 3 cut(s) 17, 602, 674
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 5 cut(s) 71, 206, 259, 372, 621
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 9 cut(s) 262, 452, 502, 549, 574, 577, 580, 586, 668
MseI TTAA 6 cut(s) 138, 182, 254, 488, 504, 669
MslI CAYNNNNRTG 2 cut(s) 248, 453
MspI CCGG 2 cut(s) 122, 521
MspR9I CCNGG 1 cut(s) 521
MwoI GCNNNNNNNGC 4 cut(s) 445, 466, 654, 699
NciI CCSGG 1 cut(s) 521
NdeII GATC 1 cut(s) 677
NlaIV GGNNCC 1 cut(s) 519
NmuCI GTSAC 1 cut(s) 730
NspI RCATGY 4 cut(s) 253, 295, 469, 697
PaeI GCATGC 3 cut(s) 295, 469, 697
PagI TCATGA 1 cut(s) 715
PciI ACATGT 1 cut(s) 249
PfeI GAWTC 4 cut(s) 237, 280, 309, 530
PscI ACATGT 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 519
PspPI GGNCC 1 cut(s) 517
PsrI GAACNNNNNNTAC 2 cut(s) 108, 140
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 248, 453
SaqAI TTAA 6 cut(s) 138, 182, 254, 488, 504, 669
Sau3AI GATC 1 cut(s) 677
Sau96I GGNCC 1 cut(s) 517
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 1 cut(s) 441
SetI ASST 6 cut(s) 84, 144, 396, 408, 444, 549
SfaNI GCATC 4 cut(s) 60, 157, 313, 457
SinI GGWCC 1 cut(s) 517
SmiMI CAYNNNNRTG 2 cut(s) 248, 453
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
SphI GCATGC 3 cut(s) 295, 469, 697
Sse9I AATT 5 cut(s) 71, 206, 259, 372, 621
SsiI CCGC 1 cut(s) 232
SspI AATATT 1 cut(s) 486
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 199, 652
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 240, 601
TasI AATT 5 cut(s) 71, 206, 259, 372, 621
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 4 cut(s) 237, 280, 309, 530
Tru1I TTAA 6 cut(s) 138, 182, 254, 488, 504, 669
Tru9I TTAA 6 cut(s) 138, 182, 254, 488, 504, 669
TscAI CASTG 3 cut(s) 193, 202, 655
TseFI GTSAC 1 cut(s) 730
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 7 cut(s) 74, 83, 99, 122, 443, 704, 732
TspRI CASTG 3 cut(s) 193, 202, 655
VneI GTGCAC 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 517
VspI ATTAAT 1 cut(s) 488
XapI RAATTY 2 cut(s) 206, 621
XceI RCATGY 4 cut(s) 253, 295, 469, 697
XmiI GTMKAC 1 cut(s) 334
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.