Prupe.1G270100_v2.0.a1

finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017318
Physical Location & Seq
Reverse (-)
27749629 .. 27750438
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G270100.1

Sequence Viewer

Length: 510 bp
ATGGAAGACTTCCCTGTCAATGCCATCCATCACGAGCGTGCACACTTTAGCTTCACCTTCGAAGACATTACCGCAGAACTAAACAACCCTAATTGTGTTCATAATCGGAACGGTTCATCAGTGCAGCCGAGAATATGTGGAAAGAAAGGAAAGAAAATGCCGATTCGACATGGACAAGTTAAAGAATTTCCGCGAGGCGCATGGGATTCTTTCTATCATGCTGGCGCTACGAGTGATTCAGCGGTCGAGACGGTACTAAAGAGGGTTAGAGTGGGTGCAGATGACAAAGAAGCATCATGTTGTGAGGAGGAGGGCCGAGAGAGAAAGAGAAGGAAAGTTTGTGTAAGTGAAAGTGATAGTTGCACTGTTTGCATGGAAGTGTTTAATGGAGGATCAGAAGTAGCTTGCATGCCTTGCACACATGTGTTTCATGACAAGTGCATAAGGACATGGCTCAGACAAAGTCACTACTGCCCTGTTTGCCGATTTGAAGTGCCAACTGCTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

170

Amino Acids

19.14

Weight (kDa)

7.08

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017318)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g01430
malus_domestica MD13G1076400.v1.1
prunus_persica Prupe.1G270100_v2.0.a1 Prupe.1G270300_v2.0.a1 Prupe.2G025300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0449061
rosa_laevigata RLG00000025857
rosa_multiflora Rmu_co8511853.1_g000002 Rmu_sc0003116.1_g000007
rosa_roxburghii Rroxscaffold_6G00427170
rosa_samantha Rh3BG016400 Rh3CG015400
rosa_wichuraiana Rw3G001220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccII CGCG 1 cut(s) 193
AciI CCGC 3 cut(s) 72, 191, 242
AclWI GGATC 1 cut(s) 400
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 421
AgsI TTSAA 1 cut(s) 491
AleI CACNNNNGTG 2 cut(s) 36, 422
AluBI AGCT 2 cut(s) 51, 404
AluI AGCT 2 cut(s) 51, 404
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 242
Alw44I GTGCAC 1 cut(s) 39
AlwI GGATC 1 cut(s) 400
AoxI GGCC 1 cut(s) 313
ApaLI GTGCAC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 185
AspLEI GCGC 2 cut(s) 200, 227
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 43
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 2 cut(s) 12, 69
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 32, 36
BcoDI GTCTC 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 313
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 12, 69
Bpu14I TTCGAA 1 cut(s) 60
BseGI GGATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 469
BseRI GAGGAG 2 cut(s) 320, 323
BseSI GKGCMC 1 cut(s) 43
BseXI GCAGC 1 cut(s) 136
BsgI GTGCAG 2 cut(s) 143, 297
Bsh1236I CGCG 1 cut(s) 193
Bsh1285I CGRYCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 315
BsiEI CGRYCG 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 242
BsmBI CGTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 1 cut(s) 392
BspACI CCGC 3 cut(s) 72, 191, 242
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 468
BspFNI CGCG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 430
BspPI GGATC 1 cut(s) 400
BspT104I TTCGAA 1 cut(s) 60
BssMI GATC 1 cut(s) 392
BssSI CACGAG 1 cut(s) 32
Bst2BI CACGAG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 113, 253, 367
BstAPI GCANNNNNTGC 2 cut(s) 369, 414
BstBI TTCGAA 1 cut(s) 60
BstC8I GCNNGC 4 cut(s) 39, 223, 406, 410
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 200, 227
BstKTI GATC 1 cut(s) 395
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 392
BstMCI CGRYCG 1 cut(s) 246
BstMWI GCNNNNNNNGC 3 cut(s) 369, 414, 480
BstNSI RCATGY 2 cut(s) 412, 425
BstSLI GKGCMC 1 cut(s) 43
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 136
BstV2I GAAGAC 2 cut(s) 12, 69
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 126, 363
Cac8I GCNNGC 4 cut(s) 39, 223, 406, 410
CciI TCATGA 1 cut(s) 430
CfoI GCGC 2 cut(s) 200, 227
Cfr13I GGNCC 1 cut(s) 313
Csp6I GTAC 1 cut(s) 254
CviAII CATG 9 cut(s) 170, 201, 218, 297, 373, 409, 422, 431, 450
CviJI RGCY 5 cut(s) 51, 127, 315, 404, 454
CviKI_1 RGCY 5 cut(s) 51, 127, 315, 404, 454
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 1 cut(s) 455
DpnI GATC 1 cut(s) 394
DpnII GATC 1 cut(s) 392
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 9 cut(s) 173, 204, 221, 300, 376, 412, 425, 434, 453
FatI CATG 9 cut(s) 169, 200, 217, 296, 372, 408, 421, 430, 449
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 125
GlaI GCGC 2 cut(s) 199, 226
GluI GCNGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 1 cut(s) 315
HhaI GCGC 2 cut(s) 200, 227
Hin1II CATG 9 cut(s) 173, 204, 221, 300, 376, 412, 425, 434, 453
Hin6I GCGC 2 cut(s) 198, 225
HinP1I GCGC 2 cut(s) 198, 225
HinfI GANTC 3 cut(s) 163, 206, 236
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 108, 397, 458
Hpy188III TCNNGA 3 cut(s) 32, 247, 431
Hpy8I GTNNAC 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 67, 324
HpyCH4III ACNGT 3 cut(s) 113, 253, 367
HpyCH4V TGCA 8 cut(s) 41, 124, 278, 363, 372, 408, 417, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 414, 480
HpyF3I CTNAG 1 cut(s) 455
Hsp92II CATG 9 cut(s) 173, 204, 221, 300, 376, 412, 425, 434, 453
HspAI GCGC 2 cut(s) 198, 225
Kzo9I GATC 1 cut(s) 392
LpnPI CCDG 3 cut(s) 27, 207, 489
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 464
MalI GATC 1 cut(s) 394
MboI GATC 1 cut(s) 392
MboII GAAGA 2 cut(s) 17, 74
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 91, 185
MnlI CCTC 6 cut(s) 188, 255, 298, 301, 304, 383
MseI TTAA 2 cut(s) 180, 384
MslI CAYNNNNRTG 3 cut(s) 36, 377, 422
MspA1I CMGCKG 1 cut(s) 242
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 3 cut(s) 369, 414, 480
NdeII GATC 1 cut(s) 392
NlaIII CATG 9 cut(s) 173, 204, 221, 300, 376, 412, 425, 434, 453
NmeAIII GCCGAG 2 cut(s) 153, 341
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 2 cut(s) 412, 425
NspV TTCGAA 1 cut(s) 60
OliI CACNNNNGTG 2 cut(s) 36, 422
PaeI GCATGC 1 cut(s) 412
PagI TCATGA 1 cut(s) 430
PciI ACATGT 1 cut(s) 421
PfeI GAWTC 3 cut(s) 163, 206, 236
PflFI GACNNNGTC 1 cut(s) 462
PkrI GCNGC 1 cut(s) 126
PscI ACATGT 1 cut(s) 421
PspPI GGNCC 1 cut(s) 313
PsyI GACNNNGTC 1 cut(s) 462
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
RseI CAYNNNNRTG 3 cut(s) 36, 377, 422
SaqAI TTAA 2 cut(s) 180, 384
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 392
Sau96I GGNCC 1 cut(s) 313
SduI GDGCHC 1 cut(s) 43
SetI ASST 3 cut(s) 53, 59, 406
SfaNI GCATC 1 cut(s) 302
SfuI TTCGAA 1 cut(s) 60
SmiMI CAYNNNNRTG 3 cut(s) 36, 377, 422
SphI GCATGC 1 cut(s) 412
Sse9I AATT 2 cut(s) 91, 185
SsiI CCGC 3 cut(s) 72, 191, 242
TaaI ACNGT 3 cut(s) 113, 253, 367
TaqI TCGA 3 cut(s) 60, 166, 246
TasI AATT 2 cut(s) 91, 185
TfiI GAWTC 3 cut(s) 163, 206, 236
Tru1I TTAA 2 cut(s) 180, 384
Tru9I TTAA 2 cut(s) 180, 384
TscAI CASTG 2 cut(s) 126, 370
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 89, 105, 419
TspRI CASTG 2 cut(s) 126, 370
Tth111I GACNNNGTC 1 cut(s) 462
VneI GTGCAC 1 cut(s) 39
XapI RAATTY 1 cut(s) 185
XceI RCATGY 2 cut(s) 412, 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.