ubiquitin-protein transferase activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g01430 |
| malus_domestica | MD13G1076400.v1.1 |
| prunus_persica | Prupe.1G270100_v2.0.a1 Prupe.1G270300_v2.0.a1 Prupe.2G025300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0449061 |
| rosa_laevigata | RLG00000025857 |
| rosa_multiflora | Rmu_co8511853.1_g000002 Rmu_sc0003116.1_g000007 |
| rosa_roxburghii | Rroxscaffold_6G00427170 |
| rosa_samantha | Rh3BG016400 Rh3CG015400 |
| rosa_wichuraiana | Rw3G001220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 4, 304 |
| AciI | CCGC | 1 cut(s) | 295 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 43, 301 |
| AspS9I | GGNCC | 1 cut(s) | 34 |
| AsuHPI | GGTGA | 1 cut(s) | 176 |
| AvaII | GGWCC | 1 cut(s) | 34 |
| BanI | GGYRCC | 2 cut(s) | 4, 304 |
| BccI | CCATC | 1 cut(s) | 32 |
| BisI | GCNGC | 1 cut(s) | 295 |
| BlsI | GCNGC | 1 cut(s) | 296 |
| Bme18I | GGWCC | 1 cut(s) | 34 |
| BmgT120I | GGNCC | 1 cut(s) | 34 |
| BmiI | GGNNCC | 2 cut(s) | 6, 306 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 136, 166 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 43, 301 |
| Bse118I | RCCGGY | 1 cut(s) | 7 |
| Bse1I | ACTGG | 1 cut(s) | 266 |
| BseGI | GGATG | 2 cut(s) | 20, 193 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 43, 301 |
| BseMII | CTCAG | 2 cut(s) | 80, 280 |
| BseNI | ACTGG | 1 cut(s) | 266 |
| BseRI | GAGGAG | 3 cut(s) | 128, 154, 157 |
| BshNI | GGYRCC | 2 cut(s) | 4, 304 |
| BsiSI | CCGG | 1 cut(s) | 8 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 43, 301 |
| BspACI | CCGC | 1 cut(s) | 295 |
| BspCNI | CTCAG | 2 cut(s) | 81, 279 |
| BspLI | GGNNCC | 2 cut(s) | 6, 306 |
| BspT107I | GGYRCC | 2 cut(s) | 4, 304 |
| BsrFI | RCCGGY | 1 cut(s) | 7 |
| BsrI | ACTGG | 1 cut(s) | 266 |
| BssAI | RCCGGY | 1 cut(s) | 7 |
| Bst4CI | ACNGT | 2 cut(s) | 211, 284 |
| Bst6I | CTCTTC | 1 cut(s) | 114 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 225 |
| BstC8I | GCNNGC | 3 cut(s) | 9, 217, 221 |
| BstDEI | CTNAG | 2 cut(s) | 89, 266 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 41 |
| BstF5I | GGATG | 2 cut(s) | 20, 193 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 225 |
| BstNSI | RCATGY | 1 cut(s) | 223 |
| BtsCI | GGATG | 2 cut(s) | 20, 193 |
| BtsI | GCAGTG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 1 cut(s) | 181 |
| Cac8I | GCNNGC | 3 cut(s) | 9, 217, 221 |
| Cfr10I | RCCGGY | 1 cut(s) | 7 |
| Cfr13I | GGNCC | 1 cut(s) | 34 |
| CviAII | CATG | 4 cut(s) | 220, 225, 233, 242 |
| CviJI | RGCY | 1 cut(s) | 265 |
| CviKI_1 | RGCY | 1 cut(s) | 265 |
| DdeI | CTNAG | 2 cut(s) | 89, 266 |
| Eam1104I | CTCTTC | 1 cut(s) | 114 |
| EarI | CTCTTC | 1 cut(s) | 114 |
| Eco47I | GGWCC | 1 cut(s) | 34 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 41 |
| EcoO109I | RGGNCCY | 1 cut(s) | 34 |
| FaeI | CATG | 4 cut(s) | 223, 228, 236, 245 |
| FaiI | YATR | 7 cut(s) | 50, 185, 221, 226, 234, 243, 254 |
| FatI | CATG | 4 cut(s) | 219, 224, 232, 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 295 |
| FokI | GGATG | 2 cut(s) | 7, 200 |
| Fsp4HI | GCNGC | 1 cut(s) | 295 |
| GluI | GCNGC | 1 cut(s) | 295 |
| HapII | CCGG | 1 cut(s) | 8 |
| Hin1II | CATG | 4 cut(s) | 223, 228, 236, 245 |
| HinfI | GANTC | 2 cut(s) | 17, 68 |
| HpaII | CCGG | 1 cut(s) | 8 |
| HphI | GGTGA | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 259 |
| Hpy188I | TCNGA | 2 cut(s) | 90, 269 |
| Hpy188III | TCNNGA | 1 cut(s) | 28 |
| Hpy8I | GTNNAC | 1 cut(s) | 259 |
| HpyAV | CCTTC | 4 cut(s) | 25, 37, 103, 155 |
| HpyCH4III | ACNGT | 2 cut(s) | 211, 284 |
| HpyCH4V | TGCA | 3 cut(s) | 174, 219, 252 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 225 |
| HpyF3I | CTNAG | 2 cut(s) | 89, 266 |
| Hsp92II | CATG | 4 cut(s) | 223, 228, 236, 245 |
| KroI | GCCGGC | 1 cut(s) | 7 |
| KroNI | GCCGGC | 1 cut(s) | 9 |
| LpnPI | CCDG | 3 cut(s) | 21, 247, 300 |
| MaeIII | GTNAC | 1 cut(s) | 275 |
| MboII | GAAGA | 1 cut(s) | 131 |
| MluCI | AATT | 2 cut(s) | 82, 147 |
| MlyI | GAGTC | 2 cut(s) | 26, 77 |
| MnlI | CCTC | 8 cut(s) | 106, 109, 115, 132, 135, 190, 194, 295 |
| MroNI | GCCGGC | 1 cut(s) | 7 |
| MspI | CCGG | 1 cut(s) | 8 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 225 |
| NaeI | GCCGGC | 1 cut(s) | 9 |
| NgoMIV | GCCGGC | 1 cut(s) | 7 |
| NlaIII | CATG | 4 cut(s) | 223, 228, 236, 245 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 306 |
| NmuCI | GTSAC | 1 cut(s) | 275 |
| NspI | RCATGY | 1 cut(s) | 223 |
| PaeI | GCATGC | 1 cut(s) | 223 |
| PdiI | GCCGGC | 1 cut(s) | 9 |
| PflFI | GACNNNGTC | 1 cut(s) | 273 |
| PkrI | GCNGC | 1 cut(s) | 296 |
| PleI | GAGTC | 2 cut(s) | 25, 76 |
| PpsI | GAGTC | 2 cut(s) | 25, 76 |
| PpuMI | RGGWCCY | 1 cut(s) | 34 |
| Psp5II | RGGWCCY | 1 cut(s) | 34 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 306 |
| PspPI | GGNCC | 1 cut(s) | 34 |
| PspPPI | RGGWCCY | 1 cut(s) | 34 |
| PsyI | GACNNNGTC | 1 cut(s) | 273 |
| SatI | GCNGC | 1 cut(s) | 295 |
| Sau96I | GGNCC | 1 cut(s) | 34 |
| SchI | GAGTC | 2 cut(s) | 26, 77 |
| SetI | ASST | 4 cut(s) | 36, 48, 166, 306 |
| SinI | GGWCC | 1 cut(s) | 34 |
| SphI | GCATGC | 1 cut(s) | 223 |
| Sse9I | AATT | 2 cut(s) | 82, 147 |
| SsiI | CCGC | 1 cut(s) | 295 |
| TaaI | ACNGT | 2 cut(s) | 211, 284 |
| TasI | AATT | 2 cut(s) | 82, 147 |
| TauI | GCSGC | 1 cut(s) | 297 |
| TscAI | CASTG | 1 cut(s) | 181 |
| TseFI | GTSAC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 275 |
| TspDTI | ATGAA | 1 cut(s) | 230 |
| TspRI | CASTG | 1 cut(s) | 181 |
| Tth111I | GACNNNGTC | 1 cut(s) | 273 |
| VpaK11BI | GGWCC | 1 cut(s) | 34 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 41 |
| XceI | RCATGY | 1 cut(s) | 223 |