Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016356

Physical Location & Seq

Genomic Coordinates Reverse (-)

1324624 .. 1325355

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGACTCTTCATTCCTCCAAAAACCTTATTCGGAATTCTCTTTCGAGTCCTGTTCTTCGTTCAGCTCACTGGATTCTGATCTCTCCTGGGATAATATGTTCAGCTTTGATCAGAGTTACAGTCATGTACAACAGCCCGCTCAGCTACCGTTCAACCAGAACGACTCGGAAGAGATGATTCTTTATGGAGTTCTTGCTCAGGCCGGAGCCGGAGACTCCTCCGACGCCACCAGTACTCCTCATCATACGAAAGATCATGAAGAGGTGAACTCCAACGCCGCCATGGAAGAGGACGAGAGCATGAAGGACGAGGTAGCTTATAGAGGAGTGCGGCGGCGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGATTCTACACGAAACGGGGTGCGAGTTTGGTTGGGAACCTTTGATACGGCGGAGGAGGCAGCCCTAGCTTACGACCAAGCTGCATTTGCAATGCGGGGGACTTTGGCCGTACTTAATTTTCCGGCTGACATTGTTTACCAGTCTCTTGTAGACATGAACTACGGATTCGAAGAGGGCTCATCTCCGGTTTTGGCCTTGAAGAAAAGACACTCCATGAAGAGGAAATCAGCCATAAAAAAAAAGAAGAAGAACGTTCAGAAGTGTGATGACGATGATGTTGGGGAATTGAGGTCGGAAAATGTGGTGGTTTTTGAAGATCTTGGTGCTGACTATTTGGAAGAGCTTCTTGGTTTATCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

244

Amino Acids

27.21

Weight (kDa)

4.65

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 156	7.8e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016356)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02270
malus_domestica	MD04G1228800.v1.1 MD12G1246000.v1.1
prunus_persica	Prupe.6G348700_v2.0.a1
pyrus_communis	pycom04g20280
rosa_chinensis	RchiOBHm_Chr3g0450011
rosa_laevigata	RLG00000025765
rosa_multiflora	Rmu_co8520667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427780
rosa_rugosa	Rorug02G0624900
rosa_samantha	Rh3AG023900 Rh3BG024500 Rh3CG023500 Rh3DG024500
rosa_wichuraiana	Rw3G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	356
AciI	CCGC	9 cut(s)	138, 279, 331, 334, 337, 356, 359, 419, 463
AclI	AACGTT	1 cut(s)	621
AcoI	YGGCCR	2 cut(s)	338, 474
AcsI	RAATTY	1 cut(s)	35
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	4 cut(s)	129, 235, 353, 480
AfiI	CCNNNNNNNGG	1 cut(s)	588
AgsI	TTSAA	3 cut(s)	154, 568, 683
AjnI	CCWGG	1 cut(s)	86
AjuI	GAANNNNNNNTTGG	2 cut(s)	699, 731
AloI	GAACNNNNNNTCC	2 cut(s)	83, 115
AluBI	AGCT	7 cut(s)	66, 105, 145, 317, 437, 449, 712
AluI	AGCT	7 cut(s)	66, 105, 145, 317, 437, 449, 712
Alw26I	GTCTC	2 cut(s)	207, 516
AoxI	GGCC	4 cut(s)	201, 338, 474, 561
ApeKI	GCWGC	2 cut(s)	428, 449
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	711
AsuHPI	GGTGA	1 cut(s)	277
AsuII	TTCGAA	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	548
BbvI	GCAGC	2 cut(s)	436, 440
BceAI	ACGGC	3 cut(s)	325, 432, 461
BcgI	CGANNNNNNTGC	2 cut(s)	431, 465
BciT130I	CCWGG	1 cut(s)	88
BclI	TGATCA	1 cut(s)	109
BcoDI	GTCTC	2 cut(s)	207, 516
BfaI	CTAG	1 cut(s)	434
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	7 cut(s)	279, 332, 335, 338, 357, 429, 450
BlpI	GCTNAGC	1 cut(s)	141
BlsI	GCNGC	7 cut(s)	280, 333, 336, 339, 358, 430, 451
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	208, 406
BmrFI	CCNGG	1 cut(s)	88
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
Bpu10I	CCTNAGC	1 cut(s)	198
Bpu1102I	GCTNAGC	1 cut(s)	141
Bpu14I	TTCGAA	1 cut(s)	537
BsaBI	GATNNNNATC	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	3 cut(s)	87, 282, 341
BsaWI	WCCGGW	1 cut(s)	553
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bsc4I	CCNNNNNNNGG	1 cut(s)	588
Bse1I	ACTGG	3 cut(s)	75, 231, 508
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	3 cut(s)	87, 282, 341
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	588
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	155, 212
BseNI	ACTGG	3 cut(s)	75, 231, 508
BseRI	GAGGAG	4 cut(s)	208, 228, 339, 437
BseX3I	CGGCCG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	436, 440
Bsh1236I	CGCG	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	341
BshFI	GGCC	4 cut(s)	203, 340, 476, 563
BsiEI	CGRYCG	1 cut(s)	341
BsiSI	CCGG	4 cut(s)	204, 210, 491, 554
BslFI	GGGAC	1 cut(s)	481
BslI	CCNNNNNNNGG	1 cut(s)	588
BsmAI	GTCTC	2 cut(s)	207, 516
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	4 cut(s)	203, 340, 476, 563
Bsp119I	TTCGAA	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	548
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	4 cut(s)	79, 109, 253, 685
Bsp1720I	GCTNAGC	1 cut(s)	141
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	9 cut(s)	138, 279, 331, 334, 337, 356, 359, 419, 463
BspANI	GGCC	4 cut(s)	203, 340, 476, 563
BspCNI	CTCAG	2 cut(s)	154, 211
BspFNI	CGCG	1 cut(s)	356
BspHI	TCATGA	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	208, 406
BspQI	GCTCTTC	1 cut(s)	702
BspT104I	TTCGAA	1 cut(s)	537
BsrBI	CCGCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	465
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	3 cut(s)	75, 231, 508
BssECI	CCNNGG	3 cut(s)	87, 282, 341
BssMI	GATC	4 cut(s)	79, 109, 253, 685
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	122, 150
Bst6I	CTCTTC	7 cut(s)	13, 165, 255, 282, 534, 581, 702
BstACI	GRCGYC	1 cut(s)	225
BstAUI	TGTACA	1 cut(s)	127
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	141, 198
BstDSI	CCRYGG	2 cut(s)	282, 341
BstFNI	CGCG	1 cut(s)	356
BstKTI	GATC	4 cut(s)	82, 112, 256, 688
BstMAI	GTCTC	2 cut(s)	207, 516
BstMBI	GATC	4 cut(s)	79, 109, 253, 685
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 337, 425, 434, 455
BstNI	CCWGG	1 cut(s)	88
BstSCI	CCNGG	1 cut(s)	86
BstUI	CGCG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	436, 440
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BstZI	CGGCCG	1 cut(s)	338
BsuRI	GGCC	4 cut(s)	203, 340, 476, 563
BtgI	CCRYGG	2 cut(s)	282, 341
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	256
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	4 cut(s)	128, 234, 352, 479
CviAII	CATG	6 cut(s)	125, 257, 283, 301, 523, 583
CviQI	GTAC	4 cut(s)	128, 234, 352, 479
DdeI	CTNAG	2 cut(s)	141, 198
DpnI	GATC	4 cut(s)	81, 111, 255, 687
DpnII	GATC	4 cut(s)	79, 109, 253, 685
EaeI	YGGCCR	2 cut(s)	338, 474
EagI	CGGCCG	1 cut(s)	338
Eam1104I	CTCTTC	7 cut(s)	13, 165, 255, 282, 534, 581, 702
EarI	CTCTTC	7 cut(s)	13, 165, 255, 282, 534, 581, 702
EciI	GGCGGA	2 cut(s)	374, 434
EclXI	CGGCCG	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	548
Eco52I	CGGCCG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	6 cut(s)	128, 260, 286, 304, 526, 586
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	6 cut(s)	124, 256, 282, 300, 522, 582
FauI	CCCGC	2 cut(s)	145, 456
FbaI	TGATCA	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	7 cut(s)	279, 332, 335, 338, 357, 429, 450
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	7 cut(s)	279, 332, 335, 338, 357, 429, 450
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	7 cut(s)	279, 332, 335, 338, 357, 429, 450
HaeIII	GGCC	4 cut(s)	203, 340, 476, 563
HapII	CCGG	4 cut(s)	204, 210, 491, 554
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	6 cut(s)	128, 260, 286, 304, 526, 586
HinfI	GANTC	8 cut(s)	5, 47, 74, 164, 178, 215, 371, 534
HpaII	CCGG	4 cut(s)	204, 210, 491, 554
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	3 cut(s)	268, 505, 520
Hpy188I	TCNGA	7 cut(s)	34, 79, 114, 169, 223, 627, 664
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	3 cut(s)	268, 505, 520
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	2 cut(s)	122, 150
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	2 cut(s)	452, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 337, 425, 434, 455
HpyF3I	CTNAG	2 cut(s)	141, 198
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	6 cut(s)	128, 260, 286, 304, 526, 586
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	79, 109, 253, 685
LguI	GCTCTTC	1 cut(s)	702
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	2 cut(s)	436, 440
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	4 cut(s)	81, 111, 255, 687
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	4 cut(s)	79, 109, 253, 685
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	548
MluCI	AATT	3 cut(s)	35, 484, 653
MlyI	GAGTC	3 cut(s)	56, 158, 209
MmeI	TCCRAC	3 cut(s)	246, 297, 642
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	1 cut(s)	483
MspI	CCGG	4 cut(s)	204, 210, 491, 554
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	1 cut(s)	356
MwoI	GCNNNNNNNGC	5 cut(s)	142, 337, 425, 434, 455
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	79, 109, 253, 685
NlaIII	CATG	6 cut(s)	128, 260, 286, 304, 526, 586
NlaIV	GGNNCC	2 cut(s)	208, 406
NspV	TTCGAA	1 cut(s)	537
PagI	TCATGA	1 cut(s)	256
PciSI	GCTCTTC	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	4 cut(s)	74, 178, 371, 534
PkrI	GCNGC	7 cut(s)	280, 333, 336, 339, 358, 430, 451
PleI	GAGTC	3 cut(s)	55, 158, 209
PpsI	GAGTC	3 cut(s)	55, 158, 209
Psp1406I	AACGTT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	2 cut(s)	208, 406
PsrI	GAACNNNNNNTAC	2 cut(s)	397, 429
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	4 cut(s)	129, 235, 353, 480
RsaNI	GTAC	4 cut(s)	128, 234, 352, 479
SapI	GCTCTTC	1 cut(s)	702
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	7 cut(s)	279, 332, 335, 338, 357, 429, 450
Sau3AI	GATC	4 cut(s)	79, 109, 253, 685
ScaI	AGTACT	1 cut(s)	235
SchI	GAGTC	3 cut(s)	56, 158, 209
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	548
SfuI	TTCGAA	1 cut(s)	537
Sse9I	AATT	3 cut(s)	35, 484, 653
SsiI	CCGC	9 cut(s)	138, 279, 331, 334, 337, 356, 359, 419, 463
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	122, 150
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	2 cut(s)	45, 537
TasI	AATT	3 cut(s)	35, 484, 653
TatI	WGTACW	2 cut(s)	127, 233
TauI	GCSGC	5 cut(s)	281, 334, 337, 340, 359
TfiI	GAWTC	4 cut(s)	74, 178, 371, 534
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	2 cut(s)	428, 449
TspDTI	ATGAA	5 cut(s)	273, 317, 539, 599, 717
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	519
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.