Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016356

Physical Location & Seq

Genomic Coordinates Forward (+)

29772519 .. 29773620

Gene Structure 1102 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGATTCTTCATTCTTCCAAAACCCCATTTCTGAATTTTCCTTTGATTCTTCTTCTTCTTCCTTCAACTCAACTCTAGATCAATACTATTCTTCTGATCATCATCATCATCTGTCATGGTCATGGGACTTTGTTGATCACCACCATCACAGTCAACCCTTGCCCCAGCTACCATTCAATGAGAACGACTCCGAAGAAATGCTTCTCTATGGAGTTCTTGCGGAGGCGCCCGCAGGAGGAGATCACAACAACTCATCGGAGACAATAACTCATTCCAACAAAGATATTCACGAAGAGGTGAATTCTTCTAATTCCACTCCCGAAGAGGATCAAGAGATTTCCTACAGAGGGGTTCGGCGGCGGCCCTGGGGAAAGTTCGCGGCGGAGATAAGAGACTCCACTCGAAACGGTGTCAGAGTTTGGTTGGGGACATTTGATACGGCGGAGGAGGCAGCCTTGGCTTATGACCAAGCAGCATTTGCCATGCGGGGGTCTTTGGCTGTCCTCAACTTTCCAGCCGACGTCGTTTATCAGTCACTTGTGGAGATGGAGTATGGATTCGAAGAGGGTTCGTCTCCGGTGTTGGCCTTGAAGAGAAGGCACTCCCTCAAGAGGAAGTCGTCAATGAACAAAAAGAAGAAATTATCAGATCATCAAAAGAATGATGATGAAGATCAGTTGGTGTTGGAGGATTTAGGCGCAGACTATTTGGAGGAGCTTCTCCGCATATCTGCGATGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

248

Amino Acids

28.09

Weight (kDa)

4.92

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016356)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02270
malus_domestica	MD04G1228800.v1.1 MD12G1246000.v1.1
prunus_persica	Prupe.6G348700_v2.0.a1
pyrus_communis	pycom04g20280
rosa_chinensis	RchiOBHm_Chr3g0450011
rosa_laevigata	RLG00000025765
rosa_multiflora	Rmu_co8520667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427780
rosa_rugosa	Rorug02G0624900
rosa_samantha	Rh3AG023900 Rh3BG024500 Rh3CG023500 Rh3DG024500
rosa_wichuraiana	Rw3G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	226
AccII	CGCG	1 cut(s)	380
AciI	CCGC	9 cut(s)	221, 231, 358, 361, 380, 383, 443, 487, 724
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	35, 301
AcyI	GRCGYC	2 cut(s)	227, 522
AfiI	CCNNNNNNNGG	4 cut(s)	236, 348, 489, 612
AgsI	TTSAA	3 cut(s)	67, 178, 592
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	169, 718
AluI	AGCT	2 cut(s)	169, 718
Alw26I	GTCTC	3 cut(s)	254, 387, 579
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	2 cut(s)	362, 585
ApeKI	GCWGC	2 cut(s)	452, 473
ApoI	RAATTY	2 cut(s)	35, 301
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	229, 701
AspS9I	GGNCC	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	131, 310
AsuII	TTCGAA	1 cut(s)	561
BanI	GGYRCC	1 cut(s)	226
BbvI	GCAGC	2 cut(s)	464, 485
BccI	CCATC	2 cut(s)	153, 541
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	367
BclI	TGATCA	2 cut(s)	97, 136
BcoDI	GTCTC	3 cut(s)	254, 387, 579
BfaI	CTAG	2 cut(s)	77, 742
BfmI	CTRYAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	230
BisI	GCNGC	5 cut(s)	359, 362, 381, 453, 474
BlsI	GCNGC	5 cut(s)	360, 363, 382, 454, 475
Bme1390I	CCNGG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	367
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	593
BsaBI	GATNNNNATC	2 cut(s)	102, 672
BsaHI	GRCGYC	2 cut(s)	227, 522
BsaJI	CCNNGG	3 cut(s)	365, 366, 456
BsaWI	WCCGGW	1 cut(s)	577
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	4 cut(s)	236, 348, 489, 612
Bse8I	GATNNNNATC	2 cut(s)	102, 672
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	3 cut(s)	365, 366, 456
BseJI	GATNNNNATC	2 cut(s)	102, 672
BseLI	CCNNNNNNNGG	4 cut(s)	236, 348, 489, 612
BseRI	GAGGAG	3 cut(s)	252, 461, 728
BseXI	GCAGC	2 cut(s)	464, 485
BseYI	CCCAGC	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	364, 587
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	578
BslFI	GGGAC	2 cut(s)	140, 442
BslI	CCNNNNNNNGG	4 cut(s)	236, 348, 489, 612
BsmAI	GTCTC	3 cut(s)	254, 387, 579
BsmBI	CGTCTC	1 cut(s)	579
BsmFI	GGGAC	2 cut(s)	140, 442
BsnI	GGCC	2 cut(s)	364, 587
Bsp119I	TTCGAA	1 cut(s)	561
Bsp143I	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
BspACI	CCGC	9 cut(s)	221, 231, 358, 361, 380, 383, 443, 487, 724
BspANI	GGCC	2 cut(s)	364, 587
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	226
BssECI	CCNNGG	3 cut(s)	365, 366, 456
BssMI	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
BssNI	GRCGYC	2 cut(s)	227, 522
BssT1I	CCWWGG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	152, 410
Bst6I	CTCTTC	4 cut(s)	288, 318, 558, 587
BstACI	GRCGYC	2 cut(s)	227, 522
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	2 cut(s)	229, 701
BstKTI	GATC	7 cut(s)	82, 100, 139, 244, 331, 652, 676
BstMAI	GTCTC	3 cut(s)	254, 387, 579
BstMBI	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 458, 479
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	464, 485
BsuRI	GGCC	2 cut(s)	364, 587
Cac8I	GCNNGC	1 cut(s)	231
CfoI	GCGC	2 cut(s)	229, 701
Cfr13I	GGNCC	1 cut(s)	363
CviAII	CATG	3 cut(s)	117, 123, 484
CviJI	RGCY	8 cut(s)	169, 364, 455, 461, 500, 518, 587, 718
CviKI_1	RGCY	8 cut(s)	169, 364, 455, 461, 500, 518, 587, 718
DinI	GGCGCC	1 cut(s)	228
DpnI	GATC	7 cut(s)	81, 99, 138, 243, 330, 651, 675
DpnII	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
Eam1104I	CTCTTC	4 cut(s)	288, 318, 558, 587
EarI	CTCTTC	4 cut(s)	288, 318, 558, 587
EciI	GGCGGA	2 cut(s)	398, 458
Eco130I	CCWWGG	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	456
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	579
FaeI	CATG	3 cut(s)	120, 126, 487
FaiI	YATR	7 cut(s)	118, 124, 210, 465, 485, 555, 728
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	2 cut(s)	140, 442
FatI	CATG	3 cut(s)	116, 122, 483
FauI	CCCGC	2 cut(s)	238, 480
FbaI	TGATCA	2 cut(s)	97, 136
Fnu4HI	GCNGC	5 cut(s)	359, 362, 381, 453, 474
Fsp4HI	GCNGC	5 cut(s)	359, 362, 381, 453, 474
FspBI	CTAG	2 cut(s)	77, 742
GlaI	GCGC	2 cut(s)	228, 700
GluI	GCNGC	5 cut(s)	359, 362, 381, 453, 474
GsaI	CCCAGC	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	364, 587
HapII	CCGG	1 cut(s)	578
HhaI	GCGC	2 cut(s)	229, 701
Hin1I	GRCGYC	2 cut(s)	227, 522
Hin1II	CATG	3 cut(s)	120, 126, 487
Hin6I	GCGC	2 cut(s)	227, 699
HinP1I	GCGC	2 cut(s)	227, 699
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	5 cut(s)	5, 47, 188, 395, 558
HpaII	CCGG	1 cut(s)	578
HphI	GGTGA	2 cut(s)	131, 310
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	6 cut(s)	34, 97, 193, 259, 416, 649
Hpy188III	TCNNGA	5 cut(s)	77, 290, 320, 332, 610
Hpy8I	GTNNAC	1 cut(s)	155
Hpy99I	CGWCG	2 cut(s)	524, 527
HpyAV	CCTTC	2 cut(s)	73, 591
HpyCH4III	ACNGT	2 cut(s)	152, 410
HpyCH4IV	ACGT	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 458, 479
HpySE526I	ACGT	1 cut(s)	522
Hsp92I	GRCGYC	2 cut(s)	227, 522
Hsp92II	CATG	3 cut(s)	120, 126, 487
HspAI	GCGC	2 cut(s)	227, 699
KasI	GGCGCC	1 cut(s)	226
Ksp22I	TGATCA	2 cut(s)	97, 136
Kzo9I	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
LmnI	GCTCC	1 cut(s)	715
LpnPI	CCDG	6 cut(s)	179, 219, 352, 379, 528, 591
Lsp1109I	GCAGC	2 cut(s)	464, 485
MaeI	CTAG	2 cut(s)	77, 742
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	7 cut(s)	81, 99, 138, 243, 330, 651, 675
MboI	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
MluCI	AATT	4 cut(s)	35, 301, 310, 641
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	182, 389
MmeI	TCCRAC	2 cut(s)	300, 666
MroXI	GAANNNNTTC	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	121
MspI	CCGG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	449, 458, 479
NarI	GGCGCC	1 cut(s)	227
NdeII	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
NlaIII	CATG	3 cut(s)	120, 126, 487
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	534
NspV	TTCGAA	1 cut(s)	561
PasI	CCCWGGG	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	3 cut(s)	5, 47, 558
PkrI	GCNGC	5 cut(s)	360, 363, 382, 454, 475
PleI	GAGTC	2 cut(s)	182, 389
PluTI	GGCGCC	1 cut(s)	230
PpsI	GAGTC	2 cut(s)	182, 389
Psp6I	CCWGG	1 cut(s)	365
PspFI	CCCAGC	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	121
SatI	GCNGC	5 cut(s)	359, 362, 381, 453, 474
Sau3AI	GATC	7 cut(s)	79, 97, 136, 241, 328, 649, 673
Sau96I	GGNCC	1 cut(s)	363
SchI	GAGTC	2 cut(s)	182, 389
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	5 cut(s)	171, 300, 525, 720, 743
SfcI	CTRYAG	1 cut(s)	343
SfoI	GGCGCC	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse9I	AATT	4 cut(s)	35, 301, 310, 641
SsiI	CCGC	9 cut(s)	221, 231, 358, 361, 380, 383, 443, 487, 724
SspDI	GGCGCC	1 cut(s)	226
SspMI	CTAG	2 cut(s)	77, 742
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	152, 410
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	403, 561
TasI	AATT	4 cut(s)	35, 301, 310, 641
TauI	GCSGC	3 cut(s)	361, 364, 383
TfiI	GAWTC	3 cut(s)	5, 47, 558
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	2 cut(s)	452, 473
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	2 cut(s)	641, 684
XapI	RAATTY	2 cut(s)	35, 301
XbaI	TCTAGA	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	2 cut(s)	77, 742
ZraI	GACGTC	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.