Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0016356

Physical Location & Seq

Genomic Coordinates Forward (+)

21799496 .. 21800158

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATCGATCACTCATGGAACATGTTCGACTTTAAAGATTATCACAACCAATCAGCCTTTCCCCAGCTACCATTTAATGAGAACGACTCAGAAGAAATGCTTCTCTATGGAGTTCTTGCTGAGGCGCCAGCAGGAGATCAGAACTCGTCGGATTCAATAGTATCCTCCACTCACTCGAAAGACCATGAAGAGGTGAATTCTTCTAGTGCCACAGCTAACGAAGATCAAGTGGTTGCTTATAGAGGCGTTCGGCGGCGGCCATGGGGAAAGTTTGCGGCGGAGATAAGAGATTCGACGCGAAACGGTGTTAGGGTTTGGTTGGGAACTTTTGACACGGCAGAGGCGGCGGCTCTGGCTTACGACCAAGCAGCACTTTCAATGCGGGGGTCTTCGGCGGTCCTCAACTTTCCAGCTGACGTGGTTCATCAGTCACTTGTGGAGATGAAGTATGGCTTTGAGGAGGGTTCGTCTCCGGTTTTGGCCTTAAAGACAAGGCACTCCATGAAGAGAAAGTCATCGATGAACAAAAAGAAGAAATCATTGCATCATAATCAGCATCAAAAGAATGATGAAGAAGGTGAAGATCAGTTGGAAAAAGTTGTGGTGTTTGAGGATTTAGGCGCAGACTATTTGGAGGAGCTACTCGGTATATCCGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

221

Amino Acids

24.64

Weight (kDa)

5.09

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	80 - 130	1.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016356)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02270
malus_domestica	MD04G1228800.v1.1 MD12G1246000.v1.1
prunus_persica	Prupe.6G348700_v2.0.a1
pyrus_communis	pycom04g20280
rosa_chinensis	RchiOBHm_Chr3g0450011
rosa_laevigata	RLG00000025765
rosa_multiflora	Rmu_co8520667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427780
rosa_rugosa	Rorug02G0624900
rosa_samantha	Rh3AG023900 Rh3BG024500 Rh3CG023500 Rh3DG024500
rosa_wichuraiana	Rw3G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccII	CGCG	1 cut(s)	298
AciI	CCGC	8 cut(s)	253, 256, 275, 278, 344, 347, 382, 395
AcoI	YGGCCR	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	156, 378
AjiI	CACGTC	1 cut(s)	418
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	5 cut(s)	67, 215, 413, 640, 660
AluI	AGCT	5 cut(s)	67, 215, 413, 640, 660
Alw26I	GTCTC	1 cut(s)	474
AoxI	GGCC	2 cut(s)	257, 480
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	2 cut(s)	23, 99
AspLEI	GCGC	2 cut(s)	127, 623
AspS9I	GGNCC	1 cut(s)	397
AsuHPI	GGTGA	2 cut(s)	205, 590
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	380
BceAI	ACGGC	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	1 cut(s)	204
BfoI	RGCGCY	1 cut(s)	128
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	6 cut(s)	254, 257, 276, 345, 348, 369
BlsI	GCNGC	6 cut(s)	255, 258, 277, 346, 349, 370
Bme18I	GGWCC	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	2 cut(s)	553, 565
BpiI	GAAGAC	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	1 cut(s)	120
Bsa29I	ATCGAT	2 cut(s)	6, 518
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	472
BsaXI	ACNNNNNCTCC	4 cut(s)	431, 452, 461, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	539
BseCI	ATCGAT	2 cut(s)	6, 518
BseDI	CCNNGG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	539
BseMII	CTCAG	2 cut(s)	102, 111
BseRI	GAGGAG	2 cut(s)	473, 650
BseXI	GCAGC	1 cut(s)	380
BseYI	CCCAGC	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	298
BshFI	GGCC	2 cut(s)	259, 482
BshNI	GGYRCC	1 cut(s)	124
BshVI	ATCGAT	2 cut(s)	6, 518
BsiSI	CCGG	1 cut(s)	473
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	474
BsmBI	CGTCTC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	259, 482
Bsp143I	GATC	5 cut(s)	3, 7, 136, 223, 583
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	8 cut(s)	253, 256, 275, 278, 344, 347, 382, 395
BspANI	GGCC	2 cut(s)	259, 482
BspCNI	CTCAG	2 cut(s)	101, 112
BspDI	ATCGAT	2 cut(s)	6, 518
BspFNI	CGCG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	126
BspT107I	GGYRCC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	5 cut(s)	3, 7, 136, 223, 583
BssNI	GRCGYC	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	2 cut(s)	183, 500
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	88, 120
BstDSI	CCRYGG	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	127, 623
BstKTI	GATC	5 cut(s)	6, 10, 139, 226, 586
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	5 cut(s)	3, 7, 136, 223, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 353
BstNSI	RCATGY	1 cut(s)	25
BstUI	CGCG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	381
Bsu15I	ATCGAT	2 cut(s)	6, 518
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	259, 482
BsuTUI	ATCGAT	2 cut(s)	6, 518
BtgI	CCRYGG	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	418
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	127, 623
Cfr13I	GGNCC	1 cut(s)	397
ClaI	ATCGAT	2 cut(s)	6, 518
CseI	GACGC	1 cut(s)	304
CviAII	CATG	5 cut(s)	15, 22, 185, 261, 502
DdeI	CTNAG	2 cut(s)	88, 120
DinI	GGCGCC	1 cut(s)	126
DpnI	GATC	5 cut(s)	5, 9, 138, 225, 585
DpnII	GATC	5 cut(s)	3, 7, 136, 223, 583
DraI	TTTAAA	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	257
Eam1104I	CTCTTC	2 cut(s)	183, 500
EarI	CTCTTC	2 cut(s)	183, 500
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	1 cut(s)	474
FaeI	CATG	5 cut(s)	18, 25, 188, 264, 505
FalI	AAGNNNNNCTT	6 cut(s)	84, 116, 357, 389, 437, 469
FatI	CATG	5 cut(s)	14, 21, 184, 260, 501
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	6 cut(s)	254, 257, 276, 345, 348, 369
Fsp4HI	GCNGC	6 cut(s)	254, 257, 276, 345, 348, 369
FspBI	CTAG	1 cut(s)	204
GlaI	GCGC	2 cut(s)	126, 622
GluI	GCNGC	6 cut(s)	254, 257, 276, 345, 348, 369
GsaI	CCCAGC	1 cut(s)	67
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	259, 482
HapII	CCGG	1 cut(s)	473
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	2 cut(s)	127, 623
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	5 cut(s)	18, 25, 188, 264, 505
Hin6I	GCGC	2 cut(s)	125, 621
HinP1I	GCGC	2 cut(s)	125, 621
HinfI	GANTC	3 cut(s)	86, 152, 290
HpaII	CCGG	1 cut(s)	473
HphI	GGTGA	2 cut(s)	205, 590
Hpy188I	TCNGA	4 cut(s)	91, 141, 151, 655
Hpy99I	CGWCG	2 cut(s)	151, 298
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	417
HpyCH4V	TGCA	1 cut(s)	544
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 353
HpyF3I	CTNAG	2 cut(s)	88, 120
HpySE526I	ACGT	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	5 cut(s)	18, 25, 188, 264, 505
HspAI	GCGC	2 cut(s)	125, 621
KasI	GGCGCC	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	3, 7, 136, 223, 583
LmnI	GCTCC	1 cut(s)	637
LpnPI	CCDG	6 cut(s)	77, 117, 141, 338, 423, 486
Lsp1109I	GCAGC	1 cut(s)	380
LweI	GCATC	2 cut(s)	553, 565
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	417
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	5 cut(s)	5, 9, 138, 225, 585
MboI	GATC	5 cut(s)	3, 7, 136, 223, 583
MboII	GAAGA	9 cut(s)	104, 192, 200, 233, 381, 517, 544, 584, 593
MluCI	AATT	1 cut(s)	196
Mly113I	GGCGCC	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	129, 570
MroXI	GAANNNNTTC	2 cut(s)	23, 99
MseI	TTAA	3 cut(s)	33, 75, 485
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	344, 353
NarI	GGCGCC	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	5 cut(s)	3, 7, 136, 223, 583
NlaIII	CATG	5 cut(s)	18, 25, 188, 264, 505
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	25
PciI	ACATGT	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PdmI	GAANNNNTTC	2 cut(s)	23, 99
PfeI	GAWTC	2 cut(s)	152, 290
PkrI	GCNGC	6 cut(s)	255, 258, 277, 346, 349, 370
PleI	GAGTC	1 cut(s)	80
PluTI	GGCGCC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	413
SaqAI	TTAA	3 cut(s)	33, 75, 485
SatI	GCNGC	6 cut(s)	254, 257, 276, 345, 348, 369
Sau3AI	GATC	5 cut(s)	3, 7, 136, 223, 583
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	80
SetI	ASST	8 cut(s)	69, 195, 217, 415, 420, 580, 642, 662
SfaNI	GCATC	2 cut(s)	553, 565
SfoI	GGCGCC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	397
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	8 cut(s)	253, 256, 275, 278, 344, 347, 382, 395
SspDI	GGCGCC	1 cut(s)	124
SspMI	CTAG	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	420
TaqI	TCGA	5 cut(s)	6, 27, 176, 293, 518
TasI	AATT	1 cut(s)	196
TauI	GCSGC	5 cut(s)	256, 259, 278, 347, 350
TfiI	GAWTC	2 cut(s)	152, 290
Tru1I	TTAA	3 cut(s)	33, 75, 485
Tru9I	TTAA	3 cut(s)	33, 75, 485
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	6 cut(s)	201, 413, 458, 518, 536, 585
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	25
XmnI	GAANNNNTTC	2 cut(s)	23, 99
XspI	CTAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.