Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0016356

Physical Location & Seq

Genomic Coordinates Forward (+)

30908814 .. 30909560

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1228800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGACCCTTCGTTCTTCCAAAACCCTAATTCTGAATTCTCGTTTGAATCTTCTTCTTCCTTCAACTCCCTAGAATATTCTCACGATGATCATCTCTCATGGAACATGTTCGACTTTAAAGATTATCACAACCAATCAGCCTTTCCCCAGCTACCATTTAATGAGAACGATTCAGAAGAAATGCTTCTCTATGGAGTTCTTGCTGAGGCGCCAGCAGGAGATCAGAACTCGTCGGATTCAATAGTATCCTCCACTCAGTCGAAAGACCATGAAGAGGTGAATTCTTCTAGTGCCACAGCTAACGAAGATCAAGTAGTTGCTTATAGAGGCGTTCGGCGGCGGCCGTGGGGAAAGTTTGCGGCGGAGATAAGAGATTCGACGCGAAACGGTGTTAGGGTTTGGTTGGGAACTTTTGACACGGCAGAGGCGGCGGCTTTGGCTTACGACCAAGCAGCACTTTCAATGCGGGGGTCTTCGGCGGTCCTCAACTTTCCAGCTGACGTGGTTCATCAGTCACTTGTGGAGATGAAGTATGGCTTTGAGGAGGGTTCGTCTCCGGTTTTGGCCTTAAAGAGAAGGCACTCCATGAAGAGAAAATCATCGATGAACAAAAAGAAGAAATCATTGCATCATAATCAGCATCAAAAGAATGATGAAGAAGGTGAAGATCAGTTGGAAAAAGTTGTGGTGTTTGAGGATTTAGGCGCAGACTATTTGGAGGAGCTACTCAGTATATCCGAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

249

Amino Acids

27.93

Weight (kDa)

4.88

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 158	2.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016356)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02270
malus_domestica	MD04G1228800.v1.1 MD12G1246000.v1.1
prunus_persica	Prupe.6G348700_v2.0.a1
pyrus_communis	pycom04g20280
rosa_chinensis	RchiOBHm_Chr3g0450011
rosa_laevigata	RLG00000025765
rosa_multiflora	Rmu_co8520667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427780
rosa_rugosa	Rorug02G0624900
rosa_samantha	Rh3AG023900 Rh3BG024500 Rh3CG023500 Rh3DG024500
rosa_wichuraiana	Rw3G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AccII	CGCG	1 cut(s)	382
AciI	CCGC	8 cut(s)	337, 340, 359, 362, 428, 431, 466, 479
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	35, 280
AcyI	GRCGYC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	274
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	47, 64, 240, 462
AjiI	CACGTC	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	5 cut(s)	151, 299, 497, 724, 744
AluI	AGCT	5 cut(s)	151, 299, 497, 724, 744
Alw26I	GTCTC	1 cut(s)	558
AoxI	GGCC	2 cut(s)	341, 564
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	2 cut(s)	35, 280
Asp700I	GAANNNNTTC	2 cut(s)	107, 183
AspLEI	GCGC	2 cut(s)	211, 707
AspS9I	GGNCC	2 cut(s)	4, 481
AsuHPI	GGTGA	2 cut(s)	289, 674
AvaII	GGWCC	2 cut(s)	4, 481
BanI	GGYRCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	465
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	464
BceAI	ACGGC	2 cut(s)	328, 435
BciVI	GTATCC	1 cut(s)	256
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	2 cut(s)	71, 288
BfoI	RGCGCY	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	256
BisI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
BlsI	GCNGC	6 cut(s)	339, 342, 361, 430, 433, 454
Bme18I	GGWCC	2 cut(s)	4, 481
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	2 cut(s)	4, 481
BmiI	GGNNCC	2 cut(s)	6, 210
BmsI	GCATC	2 cut(s)	637, 649
BpiI	GAAGAC	1 cut(s)	465
Bpu10I	CCTNAGC	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	602
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	4 cut(s)	515, 536, 545, 566
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	602
BseDI	CCNNGG	1 cut(s)	344
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMI	GCAATG	1 cut(s)	623
BseMII	CTCAG	3 cut(s)	195, 269, 742
BseRI	GAGGAG	2 cut(s)	557, 734
BseX3I	CGGCCG	1 cut(s)	341
BseXI	GCAGC	1 cut(s)	464
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	343, 566
BshNI	GGYRCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	344
BsiSI	CCGG	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	558
BsmBI	CGTCTC	1 cut(s)	558
BsnI	GGCC	2 cut(s)	343, 566
Bsp143I	GATC	4 cut(s)	88, 220, 307, 667
BspACI	CCGC	8 cut(s)	337, 340, 359, 362, 428, 431, 466, 479
BspANI	GGCC	2 cut(s)	343, 566
BspCNI	CTCAG	3 cut(s)	196, 268, 741
BspDI	ATCGAT	1 cut(s)	602
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	6, 210
BspT107I	GGYRCC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	623
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	4 cut(s)	88, 220, 307, 667
BssNI	GRCGYC	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	2 cut(s)	267, 584
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	3 cut(s)	204, 255, 728
BstDSI	CCRYGG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	211, 707
BstKTI	GATC	4 cut(s)	91, 223, 310, 670
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	4 cut(s)	88, 220, 307, 667
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	2 cut(s)	428, 437
BstNSI	RCATGY	1 cut(s)	109
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	1 cut(s)	464
BstV2I	GAAGAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	602
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	343, 566
BsuTUI	ATCGAT	1 cut(s)	602
BtgI	CCRYGG	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	2 cut(s)	211, 707
Cfr13I	GGNCC	2 cut(s)	4, 481
ClaI	ATCGAT	1 cut(s)	602
CseI	GACGC	1 cut(s)	388
CviAII	CATG	4 cut(s)	99, 106, 269, 586
DdeI	CTNAG	3 cut(s)	204, 255, 728
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	4 cut(s)	90, 222, 309, 669
DpnII	GATC	4 cut(s)	88, 220, 307, 667
DraI	TTTAAA	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	341
EagI	CGGCCG	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	267, 584
EarI	CTCTTC	2 cut(s)	267, 584
EciI	GGCGGA	1 cut(s)	377
EclXI	CGGCCG	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	4, 481
Eco52I	CGGCCG	1 cut(s)	341
EcoRI	GAATTC	2 cut(s)	35, 280
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	4 cut(s)	102, 109, 272, 589
FaiI	YATR	9 cut(s)	100, 107, 192, 270, 324, 534, 587, 633, 734
FalI	AAGNNNNNCTT	6 cut(s)	168, 200, 441, 473, 521, 553
FatI	CATG	4 cut(s)	98, 105, 268, 585
FauI	CCCGC	1 cut(s)	459
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
Fsp4HI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
FspBI	CTAG	2 cut(s)	71, 288
GlaI	GCGC	2 cut(s)	210, 706
GluI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
GsaI	CCCAGC	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	343, 566
HapII	CCGG	1 cut(s)	557
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	2 cut(s)	211, 707
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	4 cut(s)	102, 109, 272, 589
Hin6I	GCGC	2 cut(s)	209, 705
HinP1I	GCGC	2 cut(s)	209, 705
HinfI	GANTC	4 cut(s)	47, 170, 236, 374
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	2 cut(s)	289, 674
Hpy188I	TCNGA	5 cut(s)	34, 175, 225, 235, 739
Hpy188III	TCNNGA	1 cut(s)	83
Hpy99I	CGWCG	2 cut(s)	235, 382
HpyAV	CCTTC	4 cut(s)	18, 70, 570, 653
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	428, 437
HpyF3I	CTNAG	3 cut(s)	204, 255, 728
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	4 cut(s)	102, 109, 272, 589
HspAI	GCGC	2 cut(s)	209, 705
KasI	GGCGCC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	88, 220, 307, 667
LmnI	GCTCC	1 cut(s)	721
LpnPI	CCDG	5 cut(s)	161, 201, 225, 507, 570
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	2 cut(s)	637, 649
MaeI	CTAG	2 cut(s)	71, 288
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	4 cut(s)	90, 222, 309, 669
MboI	GATC	4 cut(s)	88, 220, 307, 667
MluCI	AATT	3 cut(s)	28, 35, 280
Mly113I	GGCGCC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	213, 654
MroXI	GAANNNNTTC	2 cut(s)	107, 183
MseI	TTAA	3 cut(s)	117, 159, 569
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	557
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	428, 437
NarI	GGCGCC	1 cut(s)	209
NdeII	GATC	4 cut(s)	88, 220, 307, 667
NlaIII	CATG	4 cut(s)	102, 109, 272, 589
NlaIV	GGNNCC	2 cut(s)	6, 210
NmuCI	GTSAC	1 cut(s)	513
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	107, 183
PfeI	GAWTC	4 cut(s)	47, 170, 236, 374
PkrI	GCNGC	6 cut(s)	339, 342, 361, 430, 433, 454
PluTI	GGCGCC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	6, 210
PspPI	GGNCC	2 cut(s)	4, 481
PvuII	CAGCTG	1 cut(s)	497
SaqAI	TTAA	3 cut(s)	117, 159, 569
SatI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
Sau3AI	GATC	4 cut(s)	88, 220, 307, 667
Sau96I	GGNCC	2 cut(s)	4, 481
SetI	ASST	8 cut(s)	153, 279, 301, 499, 504, 664, 726, 746
SfaNI	GCATC	2 cut(s)	637, 649
SfoI	GGCGCC	1 cut(s)	210
SinI	GGWCC	2 cut(s)	4, 481
Sse9I	AATT	3 cut(s)	28, 35, 280
SsiI	CCGC	8 cut(s)	337, 340, 359, 362, 428, 431, 466, 479
SspDI	GGCGCC	1 cut(s)	208
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	2 cut(s)	71, 288
TaaI	ACNGT	1 cut(s)	389
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	111, 260, 377, 602
TasI	AATT	3 cut(s)	28, 35, 280
TauI	GCSGC	5 cut(s)	340, 343, 362, 431, 434
TfiI	GAWTC	4 cut(s)	47, 170, 236, 374
Tru1I	TTAA	3 cut(s)	117, 159, 569
Tru9I	TTAA	3 cut(s)	117, 159, 569
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	6 cut(s)	285, 497, 542, 602, 620, 669
VpaK11BI	GGWCC	2 cut(s)	4, 481
XapI	RAATTY	2 cut(s)	35, 280
XceI	RCATGY	1 cut(s)	109
XmnI	GAANNNNTTC	2 cut(s)	107, 183
XspI	CTAG	2 cut(s)	71, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.