Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0016356

Physical Location & Seq

Genomic Coordinates Forward (+)

31620674 .. 31621420

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1246000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGACTCTTCGTTCTTCCAAAACCCTAATTCTGAATTCTCGTTCGAATCTTCTTCTTCCTTCAACTCTCGAGAATATTCTCACGATGGTCATCTCTCATGGAACGTGTTCAACTCTAATGATCATCACAACCAATCAGCCTTTCCCCAACTACCCTTTAATGAGAACGACTCAGAAGAAATGCTTCTATATGGAGTTCTTGCTGAGGCGCCTGCAGGAGATGGGAACTCATCGGGTTCAATAGTATCATCCACTCACTCCAAAGACCAAGAAGAAGTGAATTCTTCTAGTGCCACTGCTGACGAAGATCAAGTGGTTGCTTATAGAGGTGTTCGGCGGCGGCCGTGGGGAAAGTTTGCTGCAGAGATAAGAGATTCGACGCGAAACGGTGTTAGGGTTTGGTTGGGAACTTTTGACACGGCGGAGGCTGCTGCTTTGGCTTATGACCAAGCAGCATTTGCAATGCGGGGGTCTTTGGCGGTTCTCAACTTTCCGGCGGACGTGGTTTATCAGTCGCTTGTGGAGATGGAGTATGGCTTTGAAGATGGTGCGTCTCCGGTGTTGGCCTTGAAGAGAAGGCACTCCATGAAGAGAAAGTCATCGACGAACAAAAATAATAAAATACTGTACCGTAATCAGCATCAAAAGAACGATGAAGAAGATGATTATCAGTTGGAAAATGTTGTGGTGTTTGAGGATTTAGGCGCAGACTATTTGGAGGAGCTACTCAGTATATCTGAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

249

Amino Acids

27.78

Weight (kDa)

4.64

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 158	2.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016356)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02270
malus_domestica	MD04G1228800.v1.1 MD12G1246000.v1.1
prunus_persica	Prupe.6G348700_v2.0.a1
pyrus_communis	pycom04g20280
rosa_chinensis	RchiOBHm_Chr3g0450011
rosa_laevigata	RLG00000025765
rosa_multiflora	Rmu_co8520667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427780
rosa_rugosa	Rorug02G0624900
rosa_samantha	Rh3AG023900 Rh3BG024500 Rh3CG023500 Rh3DG024500
rosa_wichuraiana	Rw3G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AccII	CGCG	1 cut(s)	382
AciI	CCGC	6 cut(s)	337, 340, 422, 466, 479, 497
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	35, 280
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	629
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	5 cut(s)	64, 112, 240, 542, 571
AjiI	CACGTC	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	724, 744
AluI	AGCT	2 cut(s)	724, 744
Alw26I	GTCTC	1 cut(s)	558
Ama87I	CYCGRG	1 cut(s)	69
AoxI	GGCC	2 cut(s)	341, 564
ApeKI	GCWGC	4 cut(s)	359, 428, 431, 452
ApoI	RAATTY	2 cut(s)	35, 280
Asp700I	GAANNNNTTC	2 cut(s)	107, 183
AspLEI	GCGC	2 cut(s)	211, 707
AsuII	TTCGAA	1 cut(s)	45
AvaI	CYCGRG	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	4 cut(s)	346, 415, 418, 464
BccI	CCATC	4 cut(s)	80, 215, 520, 539
BceAI	ACGGC	2 cut(s)	328, 435
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	2 cut(s)	288, 745
BfmI	CTRYAG	2 cut(s)	213, 360
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
BlsI	GCNGC	6 cut(s)	339, 342, 361, 430, 433, 454
BmeT110I	CYCGRG	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	210
BmsI	GCATC	1 cut(s)	649
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
Bpu10I	CCTNAGC	1 cut(s)	204
Bpu14I	TTCGAA	1 cut(s)	45
BsaBI	GATNNNNATC	2 cut(s)	90, 666
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	2 cut(s)	90, 666
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	248
BseJI	GATNNNNATC	2 cut(s)	90, 666
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	186, 195, 729, 742
BseRI	GAGGAG	1 cut(s)	734
BseX3I	CGGCCG	1 cut(s)	341
BseXI	GCAGC	4 cut(s)	346, 415, 418, 464
Bsh1236I	CGCG	1 cut(s)	382
Bsh1285I	CGRYCG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	343, 566
BshNI	GGYRCC	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	494, 557
BsmAI	GTCTC	1 cut(s)	558
BsmBI	CGTCTC	1 cut(s)	558
BsnI	GGCC	2 cut(s)	343, 566
BsoBI	CYCGRG	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	121, 307
BspACI	CCGC	6 cut(s)	337, 340, 422, 466, 479, 497
BspANI	GGCC	2 cut(s)	343, 566
BspCNI	CTCAG	4 cut(s)	185, 196, 730, 741
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	2 cut(s)	217, 364
BspT104I	TTCGAA	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	2 cut(s)	121, 307
BssNI	GRCGYC	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	389, 627, 632
Bst6I	CTCTTC	3 cut(s)	13, 566, 584
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstBI	TTCGAA	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	172, 204, 728, 738
BstDSI	CCRYGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	382
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	211, 707
BstKTI	GATC	2 cut(s)	124, 310
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	2 cut(s)	121, 307
BstMCI	CGRYCG	1 cut(s)	344
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 437, 458
BstSFI	CTRYAG	2 cut(s)	213, 360
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	4 cut(s)	346, 415, 418, 464
BstZI	CGGCCG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	343, 566
BtgI	CCRYGG	1 cut(s)	344
BtrI	CACGTC	1 cut(s)	502
BtsCI	GGATG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	2 cut(s)	211, 707
CseI	GACGC	2 cut(s)	388, 540
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	2 cut(s)	99, 586
CviJI	RGCY	8 cut(s)	140, 343, 428, 440, 537, 566, 724, 744
CviKI_1	RGCY	8 cut(s)	140, 343, 428, 440, 537, 566, 724, 744
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	4 cut(s)	172, 204, 728, 738
DinI	GGCGCC	1 cut(s)	210
DpnI	GATC	2 cut(s)	123, 309
DpnII	GATC	2 cut(s)	121, 307
EaeI	YGGCCR	1 cut(s)	341
EagI	CGGCCG	1 cut(s)	341
Eam1104I	CTCTTC	3 cut(s)	13, 566, 584
EarI	CTCTTC	3 cut(s)	13, 566, 584
EciI	GGCGGA	2 cut(s)	437, 512
EclXI	CGGCCG	1 cut(s)	341
Eco52I	CGGCCG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	69
EcoRI	GAATTC	2 cut(s)	35, 280
EgeI	GGCGCC	1 cut(s)	210
EheI	GGCGCC	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	2 cut(s)	102, 589
FaiI	YATR	8 cut(s)	100, 190, 192, 324, 444, 534, 587, 734
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	2 cut(s)	98, 585
FauI	CCCGC	1 cut(s)	459
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
FokI	GGATG	1 cut(s)	235
Fsp4HI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
FspBI	CTAG	2 cut(s)	288, 745
GlaI	GCGC	2 cut(s)	210, 706
GluI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	343, 566
HapII	CCGG	2 cut(s)	494, 557
HgaI	GACGC	2 cut(s)	388, 540
HhaI	GCGC	2 cut(s)	211, 707
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	2 cut(s)	102, 589
Hin6I	GCGC	2 cut(s)	209, 705
HinP1I	GCGC	2 cut(s)	209, 705
HinfI	GANTC	4 cut(s)	5, 47, 170, 374
HpaII	CCGG	2 cut(s)	494, 557
Hpy188I	TCNGA	3 cut(s)	34, 175, 739
Hpy188III	TCNNGA	3 cut(s)	69, 71, 83
Hpy99I	CGWCG	2 cut(s)	382, 607
HpyAV	CCTTC	2 cut(s)	70, 570
HpyCH4III	ACNGT	3 cut(s)	389, 627, 632
HpyCH4IV	ACGT	2 cut(s)	105, 501
HpyCH4V	TGCA	3 cut(s)	215, 362, 461
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 437, 458
HpyF3I	CTNAG	4 cut(s)	172, 204, 728, 738
HpySE526I	ACGT	2 cut(s)	105, 501
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	102, 589
HspAI	GCGC	2 cut(s)	209, 705
KasI	GGCGCC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	121, 307
LmnI	GCTCC	1 cut(s)	721
LpnPI	CCDG	4 cut(s)	201, 225, 507, 570
Lsp1109I	GCAGC	4 cut(s)	346, 415, 418, 464
LweI	GCATC	1 cut(s)	649
MaeI	CTAG	2 cut(s)	288, 745
MaeII	ACGT	2 cut(s)	105, 501
MalI	GATC	2 cut(s)	123, 309
MboI	GATC	2 cut(s)	121, 307
MluCI	AATT	3 cut(s)	28, 35, 280
Mly113I	GGCGCC	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	5 cut(s)	199, 320, 418, 688, 712
MroXI	GAANNNNTTC	2 cut(s)	107, 183
MseI	TTAA	1 cut(s)	159
MspI	CCGG	2 cut(s)	494, 557
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	3 cut(s)	428, 437, 458
NarI	GGCGCC	1 cut(s)	209
NdeII	GATC	2 cut(s)	121, 307
NlaIII	CATG	2 cut(s)	102, 589
NlaIV	GGNNCC	1 cut(s)	210
NspV	TTCGAA	1 cut(s)	45
PaeR7I	CTCGAG	1 cut(s)	69
PdmI	GAANNNNTTC	2 cut(s)	107, 183
PfeI	GAWTC	2 cut(s)	47, 374
PkrI	GCNGC	6 cut(s)	339, 342, 361, 430, 433, 454
PleI	GAGTC	1 cut(s)	164
PluTI	GGCGCC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	210
PstI	CTGCAG	2 cut(s)	217, 364
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	6 cut(s)	338, 341, 360, 429, 432, 453
Sau3AI	GATC	2 cut(s)	121, 307
SbfI	CCTGCAGG	1 cut(s)	217
SchI	GAGTC	1 cut(s)	164
SdaI	CCTGCAGG	1 cut(s)	217
SetI	ASST	5 cut(s)	108, 331, 504, 726, 746
SfaNI	GCATC	1 cut(s)	649
SfcI	CTRYAG	2 cut(s)	213, 360
SfoI	GGCGCC	1 cut(s)	210
Sfr274I	CTCGAG	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	45
SlaI	CTCGAG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse8387I	CCTGCAGG	1 cut(s)	217
Sse9I	AATT	3 cut(s)	28, 35, 280
SsiI	CCGC	6 cut(s)	337, 340, 422, 466, 479, 497
SspDI	GGCGCC	1 cut(s)	208
SspI	AATATT	1 cut(s)	77
SspMI	CTAG	2 cut(s)	288, 745
TaaI	ACNGT	3 cut(s)	389, 627, 632
TaiI	ACGT	2 cut(s)	108, 504
TaqI	TCGA	4 cut(s)	45, 70, 377, 602
TasI	AATT	3 cut(s)	28, 35, 280
TauI	GCSGC	2 cut(s)	340, 343
TfiI	GAWTC	2 cut(s)	47, 374
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	301
TseI	GCWGC	4 cut(s)	359, 428, 431, 452
TspDTI	ATGAA	2 cut(s)	602, 669
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	2 cut(s)	35, 280
XhoI	CTCGAG	1 cut(s)	69
XmnI	GAANNNNTTC	2 cut(s)	107, 183
XspI	CTAG	2 cut(s)	288, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.