Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016356

Physical Location & Seq

Genomic Coordinates Reverse (-)

74060630 .. 74061845

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0624900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTGGCAGGAGAAGGCAAACACGTATGACGCAGGGGAGTCGTCATTTCGGGATTGGGTTGAGCACACCCGCACACTCTGCAATTTGGACTGGGTCAATGGTCTGTTGGAGAAGTGCAAGAGGCTGCGCCATCTTGACCATTGCTTCTACTTTGAGAAGATGAGGCTGAAAGGTAGCACTGACTTTGGGATGTTCAATCATGTTGTTCTTGACAATGTTCCAACACAGAAAAATGGAGTTGATTGTGGCGTCTTCGTCATCCAGAACATGATGCACTTTAAGACTAAGTGGAATGAAGGGGCCACCTCACATAAGCTTCGATGCAACGTCCTGCTTCGCTGTCTCAAGTCCCCCGCAAATGAGAGGGAAAAATTTACACTTAGGGAGGCAAGAGGATTTGCTGCTGCTGATGGCTTGGGCAGAAGTTTAAAGGATCCAAATGACATATTGGGATCCGCTGGATGGGATGCCATTGATTTGGCTGAGCTCGAAGAGGTGGGTGCTGGGTTGGGTGTTGGTGAAGATGGGTTACAGAGCTTGGCAAGAGGGAAGGATTATGTGACGTTCAAGGGGAATAACGATCTCACCAACGATTTTCCCACTGAACTCTTCCATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071369 GO:0071395 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

AP2

Protein Analysis

206

Amino Acids

23.33

Weight (kDa)

5.98

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016356)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g02270
malus_domestica	MD04G1228800.v1.1 MD12G1246000.v1.1
prunus_persica	Prupe.6G348700_v2.0.a1
pyrus_communis	pycom04g20280
rosa_chinensis	RchiOBHm_Chr3g0450011
rosa_laevigata	RLG00000025765
rosa_multiflora	Rmu_co8520667.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427780
rosa_rugosa	Rorug02G0624900
rosa_samantha	Rh3AG023900 Rh3BG024500 Rh3CG023500 Rh3DG024500
rosa_wichuraiana	Rw3G001900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	70, 354, 456
AclWI	GGATC	4 cut(s)	428, 441, 447, 460
AcsI	RAATTY	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	196, 568
AluBI	AGCT	3 cut(s)	316, 487, 537
AluI	AGCT	3 cut(s)	316, 487, 537
Alw21I	GWGCWC	2 cut(s)	66, 489
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	4 cut(s)	428, 441, 447, 460
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	3 cut(s)	124, 401, 404
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	530, 577
BamHI	GGATCC	2 cut(s)	433, 452
BanII	GRGCYC	1 cut(s)	489
BarI	GAAGNNNNNNTAC	2 cut(s)	513, 545
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	2 cut(s)	66, 489
BbvI	GCAGC	3 cut(s)	111, 388, 391
BccI	CCATC	4 cut(s)	138, 404, 456, 518
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BcoDI	GTCTC	1 cut(s)	347
BisI	GCNGC	3 cut(s)	125, 402, 405
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	3 cut(s)	126, 403, 406
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	3 cut(s)	301, 435, 454
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	3 cut(s)	261, 311, 457
BmuI	ACTGGG	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	244
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	139
BseGI	GGATG	4 cut(s)	195, 258, 467, 472
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	111, 388, 391
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	1 cut(s)	302
BsiHKAI	GWGCWC	2 cut(s)	66, 489
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	66, 489
Bsp143I	GATC	3 cut(s)	433, 452, 580
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	3 cut(s)	70, 354, 456
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	3 cut(s)	301, 435, 454
BspPI	GGATC	4 cut(s)	428, 441, 447, 460
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	433, 452, 580
BssNI	GRCGYC	1 cut(s)	249
Bst6I	CTCTTC	2 cut(s)	486, 614
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstBAI	YACGTR	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	285, 380, 483
BstF5I	GGATG	4 cut(s)	195, 258, 467, 472
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	436, 455, 583
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	433, 452, 580
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	111, 388, 391
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	433, 452
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	2 cut(s)	433, 452
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	4 cut(s)	195, 258, 467, 472
BtsIMutI	CAGTG	2 cut(s)	177, 600
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	300
CseI	GACGC	2 cut(s)	38, 238
CviAII	CATG	2 cut(s)	200, 268
CviJI	RGCY	8 cut(s)	124, 166, 302, 316, 414, 482, 487, 537
CviKI_1	RGCY	8 cut(s)	124, 166, 302, 316, 414, 482, 487, 537
DdeI	CTNAG	3 cut(s)	285, 380, 483
DpnI	GATC	3 cut(s)	435, 454, 582
DpnII	GATC	3 cut(s)	433, 452, 580
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	2 cut(s)	486, 614
EarI	CTCTTC	2 cut(s)	486, 614
Ecl136II	GAGCTC	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	489
Eco53kI	GAGCTC	1 cut(s)	487
EcoICRI	GAGCTC	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	489
FaeI	CATG	2 cut(s)	203, 271
FaiI	YATR	6 cut(s)	27, 201, 269, 312, 446, 558
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	2 cut(s)	199, 267
FauI	CCCGC	2 cut(s)	77, 361
Fnu4HI	GCNGC	3 cut(s)	125, 402, 405
FokI	GGATG	4 cut(s)	202, 245, 474, 479
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	3 cut(s)	125, 402, 405
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	3 cut(s)	125, 402, 405
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	302
HgaI	GACGC	2 cut(s)	38, 238
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	203, 271
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	2 cut(s)	530, 577
Hpy188III	TCNNGA	4 cut(s)	50, 134, 209, 262
HpyAV	CCTTC	3 cut(s)	7, 290, 544
HpyCH4IV	ACGT	3 cut(s)	23, 327, 563
HpyCH4V	TGCA	4 cut(s)	81, 117, 274, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	3 cut(s)	285, 380, 483
HpySE526I	ACGT	3 cut(s)	23, 327, 563
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	203, 271
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	3 cut(s)	433, 452, 580
LpnPI	CCDG	6 cut(s)	18, 76, 275, 344, 444, 489
Lsp1109I	GCAGC	3 cut(s)	111, 388, 391
LweI	GCATC	3 cut(s)	261, 311, 457
MaeII	ACGT	3 cut(s)	23, 327, 563
MaeIII	GTNAC	2 cut(s)	528, 559
MalI	GATC	3 cut(s)	435, 454, 582
MboI	GATC	3 cut(s)	433, 452, 580
MboII	GAAGA	5 cut(s)	169, 244, 503, 533, 601
MflI	RGATCY	2 cut(s)	433, 452
MhlI	GDGCHC	2 cut(s)	66, 489
MluCI	AATT	2 cut(s)	82, 371
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	87, 245
MnlI	CCTC	8 cut(s)	114, 156, 316, 357, 379, 386, 487, 539
MseI	TTAA	2 cut(s)	279, 428
MspA1I	CMGCKG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	78
NdeII	GATC	3 cut(s)	433, 452, 580
NlaIII	CATG	2 cut(s)	203, 271
NlaIV	GGNNCC	3 cut(s)	301, 435, 454
NmuCI	GTSAC	1 cut(s)	559
PflFI	GACNNNGTC	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	126, 403, 406
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	24
Psp124BI	GAGCTC	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	503
PspN4I	GGNNCC	3 cut(s)	301, 435, 454
PspPI	GGNCC	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	433, 452
PsyI	GACNNNGTC	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	279, 428
SatI	GCNGC	3 cut(s)	125, 402, 405
Sau3AI	GATC	3 cut(s)	433, 452, 580
Sau96I	GGNCC	1 cut(s)	300
SchI	GAGTC	1 cut(s)	47
SduI	GDGCHC	2 cut(s)	66, 489
SetI	ASST	9 cut(s)	26, 175, 308, 318, 330, 489, 498, 539, 566
SfaNI	GCATC	3 cut(s)	261, 311, 457
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	2 cut(s)	82, 371
SsiI	CCGC	3 cut(s)	70, 354, 456
SstI	GAGCTC	1 cut(s)	489
TaiI	ACGT	3 cut(s)	26, 330, 566
TaqI	TCGA	2 cut(s)	319, 489
TasI	AATT	2 cut(s)	82, 371
Tru1I	TTAA	2 cut(s)	279, 428
Tru9I	TTAA	2 cut(s)	279, 428
TscAI	CASTG	2 cut(s)	184, 607
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	124, 401, 404
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	184, 607
Tth111I	GACNNNGTC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.