FvH4_6g02300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018855
Physical Location & Seq
Forward (+)
1336682 .. 1338745
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02300.t1

Sequence Viewer

Length: 2064 bp
ATGAGAAGAATGGGCACCCAAGTAGACCACTTCACCATCCCATCAGTCCTTAAAGCCTGTGGCCAATCCTCTGTTGAAATGTTAGGAAGAGAGATCCATGGTTTCGCGCTAAAGGGCGGTTTGGATTGTGATGCTTTCGTGTGTAACGCGTTGATCAAAATGTATGGTGAATGTGGGAGATTGGAGTTGGCACGGTTAGTATTTGATGTAATGTGTGAGAGAGATGTGGTTTCTTGGAGTACTATGATTAATGGCTATGTGAGGAACAGAGGGTTTGGTGAGGCATTGGAAGTTATAAGGGAGATGCATTTCTTGCAAGTGAAGCCTAGTGAGGTTGCTATGATAAGCATGATTGGTTTATTTGCTGACATTGCTGATGTGAAAATGGCGAAAGCAATGCATTGTTATGTTGTGAGGAATAGTGCTAATGAGAAGCTGGTGGTTCCTGTAACTACTGCTTTAGTTGATATGTATGTCAAGTGTGGGAATTTGGGTTATGCAAGAAGGCTGTTTGATGGGTTGGCTGAGAAAAGTGTTGTTTCATGGACCACGATGATTGCAGGATGCATTCGTTGCAATGAGGTAGAAGAGGGGGTGAAACTTTTCAAGAGAATGCTGGAGGAGAGAAAGTTTCCTAATGAGATTACAGTGTTGAGTTTGATTATTGAGTCGGGGAACGTTGGAGCTTTGGAGTTGGGGAAGTGGCTGCATGCCTATGTTTTGAGAAATGGGTTTGTCATGTCTTTGGCTTTGGCCACTGCTTTGGTTGACATGTATGGGAAGTGTGGTGAAGCCGAATATGCGAGGGCTGTGTTTGACAGCATCGAGGAGAAAGATGTGATGATTTGGAGTGCTATGATCTCGGCTTATTCACGTGCTAATCAGACTAATCAGGCTTCAGAGCTCTTTGCTCGGATGAAGGATAGTGGAGTAAGGCCAAATCAAGTTACAATGGTTAGCCTCATTTCACTATGTGGAGAAGTAGGTGCTCTTGATCTGGGAAAATGGGTTCATTCTTACATAAACCAGCAGCGTATAGACGTTGATGTGATACTAAGAACAGCTCTAGTGGACATGTATGCAAAATGTGGGGAGATAGATGTCGCTCTCAGGCTGTTCAGCGAAGCTATAAATCGAGATAGTCAGATGTGGAATGTCATGATCACTGGACTCGCTATGCATGGTTGTGGTAAACAAGCTTTAGAGCTCTTTGAAGAAATGCAGAGACAAGGTGTTAAGCCTAATGACATCACATTTATAGGGCTACTTCATGCTTGTAGCCATGCTGGGTTGGTAGCAGATGGGAAGAAGATTTTCGAGAAAATGGTACATGACTTTAGCTTGGCTCCAAAGGTTGAGCACTATGGATGCATGGTGGATTTGCTAGGCCGAGCTGGGAAGCTCGATGAGGCTCACAAATTGATCAAAAGCATGCCCCTGGAGCCTAACACAATTGTTTGGGGTTCCCTACTTGCTGCCTGCAAAACTCATAAGAGTCCCAACTTGGCTGAAGTGGCAGCAAGACAACTGCTTAAGTTGGAACCTCAAAATTGCGGTTACAATGTTCTGATGTCAAACATCTATGCAGCATCAAACAAATGGGTTGATGTTGCTGGTGTCAGAAAAGCCATGAAAGACCAAGGAACCAAGAAAGAACCAGGTCTCAGCTCAATAGAAGTAAACGGCGCAGTTCATGACTTCATGATGGGTGATAAAACACACCCGCAAACAAGAAAAATTTATGAAATGCTGGCTGAGATGAACAAGAAGCTAAAAGAGGCTGGATACACTCCTAATACATCTGTGGTCTTGCAGAACATAGATGAGGAAGAGAAAGAAACTGCGCTGAACTACCATAGTGAAAAACTGGCCATGGCATTTGGCCTAATCAGTACAGCTGCATGTACCCCAATTCGGATTGTAAAAAATCTCCGAGTGTGTGATGACTGTCACACAGCTACAAAGCTGTTATCAAAGATTTACAGCAGAGTAATGATAGTAAGGGACCGGAATCGCTTTCACCACTTCATAGATGGATCTTGTTCTTGTGGTGACTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

688

Amino Acids

76.55

Weight (kDa)

7.23

Isoelectric Point (pI)

36.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 74 - 120 2.5e-07 PPR repeat family
PPR PF01535 77 - 103 1e-05 PPR repeat
PPR_2 PF13041 178 - 221 3e-08 PPR repeat family
PPR PF01535 180 - 208 1.1e-06 PPR repeat
PPR_2 PF13041 278 - 325 5.3e-11 PPR repeat family
PPR_3 PF13812 279 - 327 2.2e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 380 - 427 3.6e-12 PPR repeat family
PPR PF01535 383 - 412 2.2e-07 PPR repeat
E_motif PF20431 501 - 559 2.1e-17 E motif
DYW_deaminase PF14432 595 - 687 5.1e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018855)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02300
malus_domestica MD12G1245600.v1.1
prunus_persica Prupe.6G348400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450051
rosa_laevigata RLG00000025761
rosa_multiflora Rmu_sc0002646.1_g000023
rosa_rugosa Rorug02G0625100
rosa_samantha Rh3DG024800
rosa_wichuraiana Rw3G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 107, 149
AciI CCGC 3 cut(s) 117, 1554, 1724
AclI AACGTT 1 cut(s) 678
AclWI GGATC 2 cut(s) 88, 2044
AcoI YGGCCR 3 cut(s) 61, 753, 1869
AcsI RAATTY 2 cut(s) 487, 1737
AcuI CTGAAG 2 cut(s) 882, 1530
AcvI CACGTG 1 cut(s) 875
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 4 cut(s) 241, 1329, 1894, 1906
AfiI CCNNNNNNNGG 1 cut(s) 1914
AflII CTTAAG 1 cut(s) 1532
AflIII ACRYGT 3 cut(s) 147, 771, 1074
AgsI TTSAA 3 cut(s) 77, 607, 1214
AjnI CCWGG 2 cut(s) 1437, 1657
AloI GAACNNNNNNTCC 2 cut(s) 993, 1025
Alw21I GWGCWC 4 cut(s) 906, 991, 1209, 1362
Alw26I GTCTC 2 cut(s) 1219, 1667
AlwI GGATC 2 cut(s) 88, 2044
AoxI GGCC 6 cut(s) 61, 753, 935, 1387, 1869, 1882
ApeKI GCWGC 6 cut(s) 706, 1030, 1475, 1517, 1586, 1898
ApoI RAATTY 2 cut(s) 487, 1737
AseI ATTAAT 1 cut(s) 249
Asp700I GAANNNNTTC 2 cut(s) 602, 1313
AspLEI GCGC 3 cut(s) 109, 1688, 1846
AspS9I GGNCC 2 cut(s) 546, 2005
AsuHPI GGTGA 8 cut(s) 25, 179, 290, 607, 800, 1721, 2012, 2063
AvaII GGWCC 2 cut(s) 546, 2005
BaeGI GKGCMC 1 cut(s) 17
BalI TGGCCA 3 cut(s) 63, 755, 1871
BanI GGYRCC 1 cut(s) 14
BanII GRGCYC 2 cut(s) 906, 1209
BbrPI CACGTG 1 cut(s) 875
Bbv12I GWGCWC 4 cut(s) 906, 991, 1209, 1362
BbvI GCAGC 6 cut(s) 693, 1042, 1462, 1529, 1598, 1885
BccI CCATC 6 cut(s) 44, 49, 509, 1295, 1699, 2027
BceAI ACGGC 1 cut(s) 1699
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciT130I CCWGG 2 cut(s) 1439, 1659
BciVI GTATCC 1 cut(s) 1778
BclI TGATCA 3 cut(s) 153, 1161, 1422
BcoDI GTCTC 2 cut(s) 1219, 1667
BfaI CTAG 3 cut(s) 327, 1067, 1385
BfrI CTTAAG 1 cut(s) 1532
BfuI GTATCC 1 cut(s) 1778
BisI GCNGC 6 cut(s) 707, 1031, 1476, 1518, 1587, 1899
BlsI GCNGC 6 cut(s) 708, 1032, 1477, 1519, 1588, 1900
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 2 cut(s) 1439, 1659
Bme18I GGWCC 2 cut(s) 546, 2005
BmgT120I GGNCC 2 cut(s) 546, 2005
BmiI GGNNCC 8 cut(s) 16, 444, 1347, 1443, 1465, 1542, 1645, 2006
BmrFI CCNGG 2 cut(s) 1439, 1659
BmsI GCATC 6 cut(s) 121, 294, 554, 831, 1358, 1598
BpmI CTGGAG 2 cut(s) 638, 1460
BsaAI YACGTR 1 cut(s) 875
BsaI GGTCTC 1 cut(s) 1667
BsaJI CCNNGG 4 cut(s) 97, 1437, 1639, 1872
BsaWI WCCGGW 1 cut(s) 2007
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 1 cut(s) 1914
Bse1I ACTGG 2 cut(s) 1171, 1872
Bse3DI GCAATG 3 cut(s) 369, 402, 583
BseBI CCWGG 2 cut(s) 1439, 1659
BseDI CCNNGG 4 cut(s) 97, 1437, 1639, 1872
BseGI GGATG 4 cut(s) 36, 569, 921, 1373
BseLI CCNNNNNNNGG 1 cut(s) 1914
BseMI GCAATG 3 cut(s) 369, 402, 583
BseMII CTCAG 4 cut(s) 516, 1123, 1678, 1746
BseNI ACTGG 2 cut(s) 1171, 1872
BseRI GAGGAG 2 cut(s) 635, 842
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 6 cut(s) 693, 1042, 1462, 1529, 1598, 1885
BseYI CCCAGC 2 cut(s) 1286, 1394
Bsh1236I CGCG 2 cut(s) 107, 149
BshFI GGCC 6 cut(s) 63, 755, 937, 1389, 1871, 1884
BshNI GGYRCC 1 cut(s) 14
BsiHKAI GWGCWC 4 cut(s) 906, 991, 1209, 1362
BsiSI CCGG 1 cut(s) 2008
BslFI GGGAC 2 cut(s) 1482, 2018
BslI CCNNNNNNNGG 1 cut(s) 1914
BsmAI GTCTC 2 cut(s) 1219, 1667
BsmFI GGGAC 2 cut(s) 1482, 2018
BsmI GAATGC 2 cut(s) 567, 618
BsnI GGCC 6 cut(s) 63, 755, 937, 1389, 1871, 1884
Bso31I GGTCTC 1 cut(s) 1667
Bsp1286I GDGCHC 5 cut(s) 17, 906, 991, 1209, 1362
Bsp143I GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
Bsp19I CCATGG 2 cut(s) 97, 1872
BspACI CCGC 3 cut(s) 117, 1554, 1724
BspANI GGCC 6 cut(s) 63, 755, 937, 1389, 1871, 1884
BspCNI CTCAG 4 cut(s) 517, 1122, 1677, 1747
BspFNI CGCG 2 cut(s) 107, 149
BspHI TCATGA 3 cut(s) 1158, 1693, 1701
BspLI GGNNCC 8 cut(s) 16, 444, 1347, 1443, 1465, 1542, 1645, 2006
BspPI GGATC 2 cut(s) 88, 2044
BspT107I GGYRCC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 1532
BspTNI GGTCTC 1 cut(s) 1667
BsrDI GCAATG 3 cut(s) 369, 402, 583
BsrI ACTGG 2 cut(s) 1171, 1872
BssECI CCNNGG 4 cut(s) 97, 1437, 1639, 1872
BssMI GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
BssT1I CCWWGG 3 cut(s) 97, 1639, 1872
Bst2UI CCWGG 2 cut(s) 1439, 1659
Bst4CI ACNGT 3 cut(s) 195, 649, 1949
Bst6I CTCTTC 3 cut(s) 82, 582, 1824
BstAFI CTTAAG 1 cut(s) 1532
BstAPI GCANNNNNTGC 2 cut(s) 313, 573
BstBAI YACGTR 1 cut(s) 875
BstC8I GCNNGC 4 cut(s) 711, 1433, 1480, 1752
BstDEI CTNAG 5 cut(s) 525, 1055, 1109, 1664, 1755
BstDSI CCRYGG 2 cut(s) 97, 1872
BstF5I GGATG 4 cut(s) 36, 569, 921, 1373
BstFNI CGCG 2 cut(s) 107, 149
BstHHI GCGC 3 cut(s) 109, 1688, 1846
BstKTI GATC 7 cut(s) 96, 156, 861, 997, 1164, 1425, 2039
BstMAI GTCTC 2 cut(s) 1219, 1667
BstMBI GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
BstMWI GCNNNNNNNGC 7 cut(s) 313, 322, 371, 573, 800, 1441, 1514
BstNI CCWGG 2 cut(s) 1439, 1659
BstNSI RCATGY 5 cut(s) 713, 775, 1078, 1435, 1905
BstSCI CCNGG 2 cut(s) 1437, 1657
BstSLI GKGCMC 1 cut(s) 17
BstUI CGCG 2 cut(s) 107, 149
BstV1I GCAGC 6 cut(s) 693, 1042, 1462, 1529, 1598, 1885
BstX2I RGATCY 2 cut(s) 93, 2036
BstXI CCANNNNNNTGG 1 cut(s) 763
BstYI RGATCY 2 cut(s) 93, 2036
BsuI GTATCC 1 cut(s) 1778
BsuRI GGCC 6 cut(s) 63, 755, 937, 1389, 1871, 1884
BtgI CCRYGG 2 cut(s) 97, 1872
BtsCI GGATG 4 cut(s) 36, 569, 921, 1373
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 654, 756, 1164
Cac8I GCNNGC 4 cut(s) 711, 1433, 1480, 1752
CciI TCATGA 3 cut(s) 1158, 1693, 1701
CfoI GCGC 3 cut(s) 109, 1688, 1846
Cfr13I GGNCC 2 cut(s) 546, 2005
CsiI ACCWGGT 1 cut(s) 1657
Csp6I GTAC 4 cut(s) 240, 1328, 1893, 1905
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviQI GTAC 4 cut(s) 240, 1328, 1893, 1905
DdeI CTNAG 5 cut(s) 525, 1055, 1109, 1664, 1755
DpnI GATC 7 cut(s) 95, 155, 860, 996, 1163, 1424, 2038
DpnII GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
DraIII CACNNNGTG 1 cut(s) 974
EaeI YGGCCR 3 cut(s) 61, 753, 1869
Eam1104I CTCTTC 3 cut(s) 82, 582, 1824
EarI CTCTTC 3 cut(s) 82, 582, 1824
Ecl136II GAGCTC 2 cut(s) 904, 1207
Eco130I CCWWGG 3 cut(s) 97, 1639, 1872
Eco24I GRGCYC 2 cut(s) 906, 1209
Eco31I GGTCTC 1 cut(s) 1667
Eco47I GGWCC 2 cut(s) 546, 2005
Eco53kI GAGCTC 2 cut(s) 904, 1207
Eco57I CTGAAG 2 cut(s) 882, 1530
Eco72I CACGTG 1 cut(s) 875
EcoICRI GAGCTC 2 cut(s) 904, 1207
EcoRII CCWGG 2 cut(s) 1437, 1657
EcoT14I CCWWGG 3 cut(s) 97, 1639, 1872
EcoT22I ATGCAT 5 cut(s) 309, 402, 569, 1182, 1373
EcoT38I GRGCYC 2 cut(s) 906, 1209
ErhI CCWWGG 3 cut(s) 97, 1639, 1872
FaqI GGGAC 2 cut(s) 1482, 2018
FauI CCCGC 1 cut(s) 1731
FbaI TGATCA 3 cut(s) 153, 1161, 1422
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 6 cut(s) 707, 1031, 1476, 1518, 1587, 1899
FokI GGATG 4 cut(s) 23, 576, 928, 1380
FriOI GRGCYC 2 cut(s) 906, 1209
Fsp4HI GCNGC 6 cut(s) 707, 1031, 1476, 1518, 1587, 1899
FspBI CTAG 3 cut(s) 327, 1067, 1385
GlaI GCGC 3 cut(s) 108, 1687, 1845
GluI GCNGC 6 cut(s) 707, 1031, 1476, 1518, 1587, 1899
GsaI CCCAGC 2 cut(s) 1290, 1398
GsuI CTGGAG 2 cut(s) 638, 1460
HaeIII GGCC 6 cut(s) 63, 755, 937, 1389, 1871, 1884
HapII CCGG 1 cut(s) 2008
HhaI GCGC 3 cut(s) 109, 1688, 1846
Hin6I GCGC 3 cut(s) 107, 1686, 1844
HinP1I GCGC 3 cut(s) 107, 1686, 1844
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 1197
HinfI GANTC 4 cut(s) 668, 1170, 1495, 2011
HpaII CCGG 1 cut(s) 2008
HphI GGTGA 8 cut(s) 25, 179, 290, 607, 800, 1721, 2012, 2063
Hpy166II GTNNAC 5 cut(s) 25, 769, 1072, 1193, 1681
Hpy188I TCNGA 8 cut(s) 885, 901, 915, 1146, 1569, 1622, 1917, 1934
Hpy188III TCNNGA 7 cut(s) 607, 992, 1136, 1159, 1318, 1694, 1702
Hpy8I GTNNAC 5 cut(s) 25, 769, 1072, 1193, 1681
HpyAV CCTTC 2 cut(s) 498, 913
HpyCH4III ACNGT 3 cut(s) 195, 649, 1949
HpyCH4IV ACGT 3 cut(s) 678, 874, 1041
HpyF10VI GCNNNNNNNGC 7 cut(s) 313, 322, 371, 573, 800, 1441, 1514
HpyF3I CTNAG 5 cut(s) 525, 1055, 1109, 1664, 1755
HpySE526I ACGT 3 cut(s) 678, 874, 1041
HspAI GCGC 3 cut(s) 107, 1686, 1844
Ksp22I TGATCA 3 cut(s) 153, 1161, 1422
Kzo9I GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
LmnI GCTCC 3 cut(s) 683, 1351, 1441
Lsp1109I GCAGC 6 cut(s) 693, 1042, 1462, 1529, 1598, 1885
LweI GCATC 6 cut(s) 121, 294, 554, 831, 1358, 1598
MabI ACCWGGT 1 cut(s) 1657
MaeI CTAG 3 cut(s) 327, 1067, 1385
MaeII ACGT 3 cut(s) 678, 874, 1041
MaeIII GTNAC 6 cut(s) 143, 448, 946, 1556, 1949, 2051
MalI GATC 7 cut(s) 95, 155, 860, 996, 1163, 1424, 2038
MboI GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
MboII GAAGA 7 cut(s) 18, 99, 599, 1226, 1318, 1321, 1841
MfeI CAATTG 1 cut(s) 1452
MflI RGATCY 2 cut(s) 93, 2036
MhlI GDGCHC 5 cut(s) 17, 906, 991, 1209, 1362
MlsI TGGCCA 3 cut(s) 63, 755, 1871
MluCI AATT 6 cut(s) 487, 1418, 1452, 1549, 1737, 1911
MluI ACGCGT 1 cut(s) 147
MluNI TGGCCA 3 cut(s) 63, 755, 1871
MlyI GAGTC 3 cut(s) 677, 1164, 1504
MmeI TCCRAC 2 cut(s) 661, 1518
Mox20I TGGCCA 3 cut(s) 63, 755, 1871
Mph1103I ATGCAT 5 cut(s) 309, 402, 569, 1182, 1373
MroXI GAANNNNTTC 2 cut(s) 602, 1313
MscI TGGCCA 3 cut(s) 63, 755, 1871
MseI TTAA 4 cut(s) 51, 249, 1236, 1533
MslI CAYNNNNRTG 3 cut(s) 405, 714, 1185
Msp20I TGGCCA 3 cut(s) 63, 755, 1871
MspA1I CMGCKG 1 cut(s) 1898
MspCI CTTAAG 1 cut(s) 1532
MspI CCGG 1 cut(s) 2008
MspR9I CCNGG 2 cut(s) 1439, 1659
MunI CAATTG 1 cut(s) 1452
Mva1269I GAATGC 2 cut(s) 567, 618
MvaI CCWGG 2 cut(s) 1439, 1659
MvnI CGCG 2 cut(s) 107, 149
MwoI GCNNNNNNNGC 7 cut(s) 313, 322, 371, 573, 800, 1441, 1514
NcoI CCATGG 2 cut(s) 97, 1872
NdeII GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
NlaIV GGNNCC 8 cut(s) 16, 444, 1347, 1443, 1465, 1542, 1645, 2006
NmeAIII GCCGAG 2 cut(s) 842, 1415
NmuCI GTSAC 2 cut(s) 1949, 2051
NsiI ATGCAT 5 cut(s) 309, 402, 569, 1182, 1373
NspI RCATGY 5 cut(s) 713, 775, 1078, 1435, 1905
PaeI GCATGC 2 cut(s) 713, 1435
PagI TCATGA 3 cut(s) 1158, 1693, 1701
PciI ACATGT 2 cut(s) 771, 1074
PctI GAATGC 2 cut(s) 567, 618
PdmI GAANNNNTTC 2 cut(s) 602, 1313
PfeI GAWTC 1 cut(s) 2011
PkrI GCNGC 6 cut(s) 708, 1032, 1477, 1519, 1588, 1900
PleI GAGTC 3 cut(s) 676, 1164, 1503
PmaCI CACGTG 1 cut(s) 875
PmlI CACGTG 1 cut(s) 875
PpsI GAGTC 3 cut(s) 676, 1164, 1503
Ppu21I YACGTR 1 cut(s) 875
PscI ACATGT 2 cut(s) 771, 1074
PshBI ATTAAT 1 cut(s) 249
PsiI TTATAA 1 cut(s) 296
Psp124BI GAGCTC 2 cut(s) 906, 1209
Psp1406I AACGTT 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 1437, 1657
PspCI CACGTG 1 cut(s) 875
PspFI CCCAGC 2 cut(s) 1286, 1394
PspGI CCWGG 2 cut(s) 1437, 1657
PspN4I GGNNCC 8 cut(s) 16, 444, 1347, 1443, 1465, 1542, 1645, 2006
PspPI GGNCC 2 cut(s) 546, 2005
PsuI RGATCY 2 cut(s) 93, 2036
PvuII CAGCTG 1 cut(s) 1898
RsaI GTAC 4 cut(s) 241, 1329, 1894, 1906
RsaNI GTAC 4 cut(s) 240, 1328, 1893, 1905
RseI CAYNNNNRTG 3 cut(s) 405, 714, 1185
SacI GAGCTC 2 cut(s) 906, 1209
SaqAI TTAA 4 cut(s) 51, 249, 1236, 1533
SatI GCNGC 6 cut(s) 707, 1031, 1476, 1518, 1587, 1899
Sau3AI GATC 7 cut(s) 93, 153, 858, 994, 1161, 1422, 2036
Sau96I GGNCC 2 cut(s) 546, 2005
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 3 cut(s) 677, 1164, 1504
ScrFI CCNGG 2 cut(s) 1439, 1659
SduI GDGCHC 5 cut(s) 17, 906, 991, 1209, 1362
SexAI ACCWGGT 1 cut(s) 1657
SfaNI GCATC 6 cut(s) 121, 294, 554, 831, 1358, 1598
SinI GGWCC 2 cut(s) 546, 2005
SmiMI CAYNNNNRTG 3 cut(s) 405, 714, 1185
SmlI CTYRAG 1 cut(s) 1532
SmoI CTYRAG 1 cut(s) 1532
SphI GCATGC 2 cut(s) 713, 1435
Sse9I AATT 6 cut(s) 487, 1418, 1452, 1549, 1737, 1911
SsiI CCGC 3 cut(s) 117, 1554, 1724
SspMI CTAG 3 cut(s) 327, 1067, 1385
SstI GAGCTC 2 cut(s) 906, 1209
StyD4I CCNGG 2 cut(s) 1437, 1657
StyI CCWWGG 3 cut(s) 97, 1639, 1872
TaaI ACNGT 3 cut(s) 195, 649, 1949
TaiI ACGT 3 cut(s) 681, 877, 1044
TaqI TCGA 4 cut(s) 825, 1135, 1317, 1404
TasI AATT 6 cut(s) 487, 1418, 1452, 1549, 1737, 1911
TatI WGTACW 2 cut(s) 239, 1892
TfiI GAWTC 1 cut(s) 2011
Tru1I TTAA 4 cut(s) 51, 249, 1236, 1533
Tru9I TTAA 4 cut(s) 51, 249, 1236, 1533
TscAI CASTG 3 cut(s) 654, 763, 1171
TseFI GTSAC 2 cut(s) 1949, 2051
TseI GCWGC 6 cut(s) 706, 1030, 1475, 1517, 1586, 1898
Tsp45I GTSAC 2 cut(s) 1949, 2051
TspRI CASTG 3 cut(s) 654, 763, 1171
Vha464I CTTAAG 1 cut(s) 1532
VpaK11BI GGWCC 2 cut(s) 546, 2005
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 2 cut(s) 487, 1737
XceI RCATGY 5 cut(s) 713, 775, 1078, 1435, 1905
XcmI CCANNNNNNNNNTGG 1 cut(s) 2030
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 2 cut(s) 602, 1313
XspI CTAG 3 cut(s) 327, 1067, 1385
ZrmI AGTACT 1 cut(s) 241
Zsp2I ATGCAT 5 cut(s) 309, 402, 569, 1182, 1373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.