Rh3DG024800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018855
Physical Location & Seq
Forward (+)
1628486 .. 1630540
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG024800.1

Sequence Viewer

Length: 1785 bp
ATGGGCACCCAAGTTGACAACTTTACCATCCCATCAGTCCTCAAGGCCTGTGGTCAAGCTTCTATGGAACTATTAGGAAGAGAGACCCATGGTTTTGCATTGAAAAGCGGATTAGATAGCGATGTTTTCGTGTGTAATGCATTGATCCAAATGTATAGTGAATGTGGGAGCCTGGTTTTGGCACGCCTAGTATTTGATGAAATGATTGAAAGAGACGTGGTTTCTTGGAGTACCATGATTAGTTGCTATGTGAGGAACAGAGTGTTTGGTGAGGCATTGGAACTTATAAGGGAGATGCATTGCTTGCAAGTGAAGCCTAGTGAGGTTGCTATGATAAGCATGGTTAGTCTATTTGCTGACATTGCTGATGTGAAAATGGGGAAAGCAATGCATGCTTATGTTGCGAGGAATAGCAGTAATGAGAGAATGGTGGTTCATGTTACTACTGCTTTAGTAGATATGTATGTCAAGTGTGGGAATTTGGCTTATGGAAGGAGGCTGTTTGATGGGTTGGCTCAGAAAAGTGTTGTTTCCTGGACTGCGATGATCGCGGGGTGCATTCGTTGCAATGAGGTAGAAGAGGGGGTGAAACTTTTTAAGAGAATGCTGGAGGAGAGGAAGTTTCCTAATGAGATTACAATGTTGAGTTTGGTTATCGAGTCGGGGTCTGTTGGAGCTCTGGAATTGGGGAAGTGGCTGCATGCCTATGTTTTGAGAAATGGGTTTATCATGTCTTTGGCTTTGGCCACTGCTTTGGTTGATATGTATGGGAAGTGTGGTGAAGCCGAATATGCAAGGGCTGTGTTTGACAGCATGGAGAAGAAAGATGTCATGATTTGGAGTGCTATGATCTCGGCTTATGCACGCTCCAATTGTACTAATCAGGCTTCGGAGCTCTTTGCCCGGATGAAGGATAGTGGAATAAGGCCAAATCAAGTTACAATGAGAGCAGGTGTTGAGCCTAACGACATCACATTTATAGGGCTACTTCATGCTTGTAGCCATGCTGGGTTGGTGGCAGATGGAAAGAAGGTTTTCGAGAAAATGGTACTTGACTTTGGCTTGGCTCCAAAGGTTGAGCACTATGGATGCATGGTGGATTTGCTAGGCCGAGCTGGGAAGCTCGACGAGGCTCACGAGTTGATCAAAAGCATGCCCGTGGAGCCTAACGCAATTGTTTGGGGCTCCCTGCTTGCTGCCTGCAAAATTCATAAGAGTCCCAACTTGGCTGAAGTAGCAGCAAGACAACTGCTTGAGTTGGAACCTCAAAATTGCGGTTACAACGTTCTGATGTCAAACATCTATGCAGCATCAAACAGATGGATTGATGTTGCTGGGGTTCGAAAATTTATGAAAGATAAAGGAACCAAGAAAGAACCAGGTCTCAGCTCAATTGAAGTAAATGGTGCAGTTCATGACTTCATGATGGGTGATAAAACACACCCGCAAACAAGAAAAATTTATGAAATGCTGGCTGAGATGATCAAGAAGCTAAAGGAGGCTGGATACACTCCTAATACATCTGTGGTTTTGCAGAACATAGATGAGGAAGAGAAAGAAACTGCGGTAAACTATCATAGTGAGAAACTGGCCATGGCATTTGGTCTAATCAGTACTGCTGCAGGTACCCCAATTCGGATTGTGAAAAATCTCCGAGTTTGTGATGACTGTCACACAGCAACAAAGCTGTTATCAAAGATTTATGGCAGAGTAATGACAGTAAGGGACCGTAATCGCTTTCACCACTTCATAGAAGGATCTTGTTCTTGTGGTGACTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

594

Amino Acids

65.96

Weight (kDa)

6.96

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 71 - 116 3.4e-07 PPR repeat family
PPR PF01535 74 - 100 6.3e-06 PPR repeat
PPR_2 PF13041 175 - 216 1.1e-07 PPR repeat family
PPR PF01535 177 - 205 1.6e-06 PPR repeat
PPR_2 PF13041 275 - 315 1.4e-08 PPR repeat family
E_motif PF20431 408 - 466 1.5e-18 E motif
Eplus_motif PF20430 471 - 498 4.5e-06 E+ motif
DYW_deaminase PF14432 502 - 594 1.8e-39 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018855)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02300
malus_domestica MD12G1245600.v1.1
prunus_persica Prupe.6G348400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450051
rosa_laevigata RLG00000025761
rosa_multiflora Rmu_sc0002646.1_g000023
rosa_rugosa Rorug02G0625100
rosa_samantha Rh3DG024800
rosa_wichuraiana Rw3G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AarI CACCTGC 1 cut(s) 941
Acc36I ACCTGC 2 cut(s) 941, 1613
Acc65I GGTACC 1 cut(s) 1625
AccB1I GGYRCC 2 cut(s) 5, 1625
AccII CGCG 1 cut(s) 551
AciI CCGC 5 cut(s) 108, 551, 1275, 1445, 1565
AclI AACGTT 1 cut(s) 1284
AclWI GGATC 2 cut(s) 139, 1765
AcoI YGGCCR 2 cut(s) 744, 1590
AcsI RAATTY 4 cut(s) 478, 1206, 1346, 1458
AcuI CTGAAG 1 cut(s) 1251
AfaI GTAC 5 cut(s) 232, 877, 1050, 1615, 1627
AfiI CCNNNNNNNGG 3 cut(s) 178, 910, 1635
AgsI TTSAA 3 cut(s) 103, 209, 1397
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 171, 533, 1378
AluBI AGCT 8 cut(s) 59, 677, 895, 1115, 1123, 1389, 1492, 1687
AluI AGCT 8 cut(s) 59, 677, 895, 1115, 1123, 1389, 1492, 1687
Alw21I GWGCWC 3 cut(s) 679, 897, 1083
Alw26I GTCTC 3 cut(s) 77, 207, 1388
AlwI GGATC 2 cut(s) 139, 1765
AoxI GGCC 5 cut(s) 45, 744, 926, 1108, 1590
ApeKI GCWGC 5 cut(s) 697, 1196, 1238, 1307, 1619
ApoI RAATTY 4 cut(s) 478, 1206, 1346, 1458
Asp700I GAANNNNTTC 1 cut(s) 1034
Asp718I GGTACC 1 cut(s) 1625
AspS9I GGNCC 1 cut(s) 1726
AsuC2I CCSGG 1 cut(s) 904
AsuHPI GGTGA 6 cut(s) 281, 598, 791, 1442, 1733, 1784
AsuII TTCGAA 1 cut(s) 1342
AvaII GGWCC 1 cut(s) 1726
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 2 cut(s) 746, 1592
BanI GGYRCC 2 cut(s) 5, 1625
BanII GRGCYC 3 cut(s) 679, 897, 1187
BauI CACGAG 1 cut(s) 1136
Bbv12I GWGCWC 3 cut(s) 679, 897, 1083
BbvI GCAGC 5 cut(s) 684, 1183, 1250, 1319, 1606
BccI CCATC 6 cut(s) 35, 40, 500, 1016, 1314, 1420
BciT130I CCWGG 3 cut(s) 173, 535, 1380
BciVI GTATCC 1 cut(s) 1499
BclI TGATCA 2 cut(s) 1143, 1482
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 3 cut(s) 77, 207, 1388
BfaI CTAG 3 cut(s) 188, 318, 1106
BfmI CTRYAG 1 cut(s) 1620
BfuAI ACCTGC 2 cut(s) 941, 1613
BfuI GTATCC 1 cut(s) 1499
BisI GCNGC 5 cut(s) 698, 1197, 1239, 1308, 1620
BlsI GCNGC 5 cut(s) 699, 1198, 1240, 1309, 1621
BmcAI AGTACT 1 cut(s) 1615
Bme1390I CCNGG 4 cut(s) 173, 535, 904, 1380
Bme18I GGWCC 1 cut(s) 1726
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 1726
BmiI GGNNCC 9 cut(s) 7, 170, 1068, 1164, 1186, 1263, 1366, 1627, 1727
BmrFI CCNGG 4 cut(s) 173, 535, 904, 1380
BmsI GCATC 3 cut(s) 285, 1079, 1319
BpmI CTGGAG 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 1342
BpuEI CTTGAG 2 cut(s) 26, 1274
BpuMI CCSGG 1 cut(s) 904
BsaI GGTCTC 2 cut(s) 77, 1388
BsaJI CCNNGG 3 cut(s) 88, 1158, 1593
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 910, 1635
Bse1I ACTGG 1 cut(s) 1593
Bse3DI GCAATG 4 cut(s) 298, 360, 393, 574
BseBI CCWGG 3 cut(s) 173, 535, 1380
BseDI CCNNGG 3 cut(s) 88, 1158, 1593
BseGI GGATG 3 cut(s) 27, 912, 1094
BseLI CCNNNNNNNGG 3 cut(s) 178, 910, 1635
BseMI GCAATG 4 cut(s) 298, 360, 393, 574
BseMII CTCAG 3 cut(s) 530, 1399, 1467
BseNI ACTGG 1 cut(s) 1593
BseRI GAGGAG 1 cut(s) 626
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 5 cut(s) 684, 1183, 1250, 1319, 1606
BseYI CCCAGC 3 cut(s) 1007, 1115, 1334
BsgI GTGCAG 1 cut(s) 1428
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 5 cut(s) 47, 746, 928, 1110, 1592
BshNI GGYRCC 2 cut(s) 5, 1625
BsiHKAI GWGCWC 3 cut(s) 679, 897, 1083
BsiSI CCGG 1 cut(s) 904
BslFI GGGAC 2 cut(s) 1203, 1739
BslI CCNNNNNNNGG 3 cut(s) 178, 910, 1635
BsmAI GTCTC 3 cut(s) 77, 207, 1388
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 2 cut(s) 1203, 1739
BsmI GAATGC 2 cut(s) 558, 609
BsnI GGCC 5 cut(s) 47, 746, 928, 1110, 1592
Bso31I GGTCTC 2 cut(s) 77, 1388
Bsp119I TTCGAA 1 cut(s) 1342
Bsp1286I GDGCHC 5 cut(s) 8, 679, 897, 1083, 1187
Bsp143I GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
Bsp19I CCATGG 2 cut(s) 88, 1593
BspACI CCGC 5 cut(s) 108, 551, 1275, 1445, 1565
BspANI GGCC 5 cut(s) 47, 746, 928, 1110, 1592
BspCNI CTCAG 3 cut(s) 529, 1398, 1468
BspFNI CGCG 1 cut(s) 551
BspHI TCATGA 3 cut(s) 831, 1414, 1422
BspLI GGNNCC 9 cut(s) 7, 170, 1068, 1164, 1186, 1263, 1366, 1627, 1727
BspMAI CTGCAG 1 cut(s) 1624
BspMI ACCTGC 2 cut(s) 941, 1613
BspPI GGATC 2 cut(s) 139, 1765
BspT104I TTCGAA 1 cut(s) 1342
BspT107I GGYRCC 2 cut(s) 5, 1625
BspTNI GGTCTC 2 cut(s) 77, 1388
BsrDI GCAATG 4 cut(s) 298, 360, 393, 574
BsrI ACTGG 1 cut(s) 1593
BssECI CCNNGG 3 cut(s) 88, 1158, 1593
BssMI GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
BssSI CACGAG 1 cut(s) 1136
BssT1I CCWWGG 2 cut(s) 88, 1593
Bst2BI CACGAG 1 cut(s) 1136
Bst2UI CCWGG 3 cut(s) 173, 535, 1380
Bst4CI ACNGT 3 cut(s) 1670, 1720, 1730
Bst6I CTCTTC 3 cut(s) 73, 573, 1545
BstAPI GCANNNNNTGC 3 cut(s) 304, 392, 564
BstBI TTCGAA 1 cut(s) 1342
BstC8I GCNNGC 9 cut(s) 184, 305, 393, 702, 865, 1154, 1194, 1201, 1473
BstDEI CTNAG 3 cut(s) 516, 1385, 1476
BstDSI CCRYGG 3 cut(s) 88, 1158, 1593
BstF5I GGATG 3 cut(s) 27, 912, 1094
BstFNI CGCG 1 cut(s) 551
BstKTI GATC 6 cut(s) 147, 549, 852, 1146, 1485, 1760
BstMAI GTCTC 3 cut(s) 77, 207, 1388
BstMBI GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
BstNI CCWGG 3 cut(s) 173, 535, 1380
BstNSI RCATGY 3 cut(s) 395, 704, 1156
BstSCI CCNGG 4 cut(s) 171, 533, 902, 1378
BstSFI CTRYAG 1 cut(s) 1620
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 5 cut(s) 684, 1183, 1250, 1319, 1606
BstX2I RGATCY 1 cut(s) 1757
BstXI CCANNNNNNTGG 1 cut(s) 754
BstYI RGATCY 1 cut(s) 1757
BsuI GTATCC 1 cut(s) 1499
BsuRI GGCC 5 cut(s) 47, 746, 928, 1110, 1592
BtgI CCRYGG 3 cut(s) 88, 1158, 1593
BtgZI GCGATG 2 cut(s) 135, 557
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 3 cut(s) 27, 912, 1094
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 1 cut(s) 747
BveI ACCTGC 2 cut(s) 941, 1613
Cac8I GCNNGC 9 cut(s) 184, 305, 393, 702, 865, 1154, 1194, 1201, 1473
CciI TCATGA 3 cut(s) 831, 1414, 1422
Cfr13I GGNCC 1 cut(s) 1726
CsiI ACCWGGT 1 cut(s) 1378
Csp6I GTAC 5 cut(s) 231, 876, 1049, 1614, 1626
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviQI GTAC 5 cut(s) 231, 876, 1049, 1614, 1626
DdeI CTNAG 3 cut(s) 516, 1385, 1476
DpnI GATC 6 cut(s) 146, 548, 851, 1145, 1484, 1759
DpnII GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
EaeI YGGCCR 2 cut(s) 744, 1590
Eam1104I CTCTTC 3 cut(s) 73, 573, 1545
EarI CTCTTC 3 cut(s) 73, 573, 1545
Ecl136II GAGCTC 2 cut(s) 677, 895
Eco130I CCWWGG 2 cut(s) 88, 1593
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 3 cut(s) 679, 897, 1187
Eco31I GGTCTC 2 cut(s) 77, 1388
Eco47I GGWCC 1 cut(s) 1726
Eco53kI GAGCTC 2 cut(s) 677, 895
Eco57I CTGAAG 1 cut(s) 1251
EcoICRI GAGCTC 2 cut(s) 677, 895
EcoRII CCWGG 3 cut(s) 171, 533, 1378
EcoT14I CCWWGG 2 cut(s) 88, 1593
EcoT22I ATGCAT 4 cut(s) 142, 300, 393, 1094
EcoT38I GRGCYC 3 cut(s) 679, 897, 1187
ErhI CCWWGG 2 cut(s) 88, 1593
Esp3I CGTCTC 1 cut(s) 207
FaqI GGGAC 2 cut(s) 1203, 1739
FauI CCCGC 2 cut(s) 544, 1452
FbaI TGATCA 2 cut(s) 1143, 1482
Fnu4HI GCNGC 5 cut(s) 698, 1197, 1239, 1308, 1620
FokI GGATG 3 cut(s) 14, 919, 1101
FriOI GRGCYC 3 cut(s) 679, 897, 1187
Fsp4HI GCNGC 5 cut(s) 698, 1197, 1239, 1308, 1620
FspBI CTAG 3 cut(s) 188, 318, 1106
GluI GCNGC 5 cut(s) 698, 1197, 1239, 1308, 1620
GsaI CCCAGC 3 cut(s) 1011, 1119, 1338
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 5 cut(s) 47, 746, 928, 1110, 1592
HapII CCGG 1 cut(s) 904
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 2 cut(s) 659, 1216
HpaII CCGG 1 cut(s) 904
HphI GGTGA 6 cut(s) 281, 598, 791, 1442, 1733, 1784
Hpy166II GTNNAC 2 cut(s) 16, 1570
Hpy188I TCNGA 5 cut(s) 519, 892, 1290, 1638, 1655
Hpy188III TCNNGA 7 cut(s) 680, 832, 1039, 1136, 1415, 1423, 1486
Hpy8I GTNNAC 2 cut(s) 16, 1570
Hpy99I CGWCG 1 cut(s) 1130
HpyAV CCTTC 4 cut(s) 486, 904, 1024, 1748
HpyCH4III ACNGT 3 cut(s) 1670, 1720, 1730
HpyCH4IV ACGT 2 cut(s) 216, 1284
HpyF3I CTNAG 3 cut(s) 516, 1385, 1476
HpySE526I ACGT 2 cut(s) 216, 1284
KpnI GGTACC 1 cut(s) 1629
Ksp22I TGATCA 2 cut(s) 1143, 1482
Kzo9I GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
LmnI GCTCC 7 cut(s) 168, 674, 872, 892, 1072, 1162, 1190
Lsp1109I GCAGC 5 cut(s) 684, 1183, 1250, 1319, 1606
LweI GCATC 3 cut(s) 285, 1079, 1319
MabI ACCWGGT 1 cut(s) 1378
MaeI CTAG 3 cut(s) 188, 318, 1106
MaeII ACGT 2 cut(s) 216, 1284
MaeIII GTNAC 5 cut(s) 439, 937, 1277, 1670, 1772
MalI GATC 6 cut(s) 146, 548, 851, 1145, 1484, 1759
MboI GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
MboII GAAGA 4 cut(s) 90, 590, 832, 1562
MfeI CAATTG 3 cut(s) 871, 1173, 1392
MflI RGATCY 1 cut(s) 1757
MhlI GDGCHC 5 cut(s) 8, 679, 897, 1083, 1187
MlsI TGGCCA 2 cut(s) 746, 1592
MluNI TGGCCA 2 cut(s) 746, 1592
MlyI GAGTC 2 cut(s) 668, 1225
MmeI TCCRAC 2 cut(s) 652, 1239
Mox20I TGGCCA 2 cut(s) 746, 1592
Mph1103I ATGCAT 4 cut(s) 142, 300, 393, 1094
MroXI GAANNNNTTC 1 cut(s) 1034
MscI TGGCCA 2 cut(s) 746, 1592
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 3 cut(s) 396, 705, 1157
Msp20I TGGCCA 2 cut(s) 746, 1592
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 4 cut(s) 173, 535, 904, 1380
MunI CAATTG 3 cut(s) 871, 1173, 1392
Mva1269I GAATGC 2 cut(s) 558, 609
MvaI CCWGG 3 cut(s) 173, 535, 1380
MvnI CGCG 1 cut(s) 551
NciI CCSGG 1 cut(s) 904
NcoI CCATGG 2 cut(s) 88, 1593
NdeII GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
NlaIV GGNNCC 9 cut(s) 7, 170, 1068, 1164, 1186, 1263, 1366, 1627, 1727
NmeAIII GCCGAG 2 cut(s) 833, 1136
NmuCI GTSAC 2 cut(s) 1670, 1772
NsiI ATGCAT 4 cut(s) 142, 300, 393, 1094
NspI RCATGY 3 cut(s) 395, 704, 1156
NspV TTCGAA 1 cut(s) 1342
PaeI GCATGC 3 cut(s) 395, 704, 1156
PagI TCATGA 3 cut(s) 831, 1414, 1422
PaqCI CACCTGC 1 cut(s) 941
PceI AGGCCT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 1134
PctI GAATGC 2 cut(s) 558, 609
PdmI GAANNNNTTC 1 cut(s) 1034
PfoI TCCNGGA 1 cut(s) 533
PkrI GCNGC 5 cut(s) 699, 1198, 1240, 1309, 1621
PleI GAGTC 2 cut(s) 667, 1224
PpsI GAGTC 2 cut(s) 667, 1224
PsiI TTATAA 1 cut(s) 287
Psp124BI GAGCTC 2 cut(s) 679, 897
Psp1406I AACGTT 1 cut(s) 1284
Psp6I CCWGG 3 cut(s) 171, 533, 1378
PspFI CCCAGC 3 cut(s) 1007, 1115, 1334
PspGI CCWGG 3 cut(s) 171, 533, 1378
PspN4I GGNNCC 9 cut(s) 7, 170, 1068, 1164, 1186, 1263, 1366, 1627, 1727
PspPI GGNCC 1 cut(s) 1726
PstI CTGCAG 1 cut(s) 1624
PsuI RGATCY 1 cut(s) 1757
RsaI GTAC 5 cut(s) 232, 877, 1050, 1615, 1627
RsaNI GTAC 5 cut(s) 231, 876, 1049, 1614, 1626
RseI CAYNNNNRTG 3 cut(s) 396, 705, 1157
SacI GAGCTC 2 cut(s) 679, 897
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 5 cut(s) 698, 1197, 1239, 1308, 1620
Sau3AI GATC 6 cut(s) 144, 546, 849, 1143, 1482, 1757
Sau96I GGNCC 1 cut(s) 1726
ScaI AGTACT 1 cut(s) 1615
SchI GAGTC 2 cut(s) 668, 1225
ScrFI CCNGG 4 cut(s) 173, 535, 904, 1380
SduI GDGCHC 5 cut(s) 8, 679, 897, 1083, 1187
SexAI ACCWGGT 1 cut(s) 1378
SfaNI GCATC 3 cut(s) 285, 1079, 1319
SfcI CTRYAG 1 cut(s) 1620
SfuI TTCGAA 1 cut(s) 1342
SinI GGWCC 1 cut(s) 1726
SmiMI CAYNNNNRTG 3 cut(s) 396, 705, 1157
SmlI CTYRAG 2 cut(s) 41, 1253
SmoI CTYRAG 2 cut(s) 41, 1253
SphI GCATGC 3 cut(s) 395, 704, 1156
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 5 cut(s) 108, 551, 1275, 1445, 1565
SspMI CTAG 3 cut(s) 188, 318, 1106
SstI GAGCTC 2 cut(s) 679, 897
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 4 cut(s) 171, 533, 902, 1378
StyI CCWWGG 2 cut(s) 88, 1593
TaaI ACNGT 3 cut(s) 1670, 1720, 1730
TaiI ACGT 2 cut(s) 219, 1287
TaqI TCGA 4 cut(s) 657, 1038, 1125, 1342
TatI WGTACW 2 cut(s) 875, 1613
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 2 cut(s) 1670, 1772
TseI GCWGC 5 cut(s) 697, 1196, 1238, 1307, 1619
Tsp45I GTSAC 2 cut(s) 1670, 1772
TspRI CASTG 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 1726
XapI RAATTY 4 cut(s) 478, 1206, 1346, 1458
XceI RCATGY 3 cut(s) 395, 704, 1156
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 3 cut(s) 188, 318, 1106
ZrmI AGTACT 1 cut(s) 1615
Zsp2I ATGCAT 4 cut(s) 142, 300, 393, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.