RLG00000025761

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018855
Physical Location & Seq
Reverse (-)
48123677 .. 48125731
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025761

Sequence Viewer

Length: 2055 bp
ATGGGCACCCAAGTTGACCACTTCACTATCCCATCAGTCCTCAAGGCCTGTGGTCAAGCTTCTATGGAACTATTAGGAAGAGAGACCCATGGTTTTGCGCTAAAGGGCGGTTTGGATAGTGACGCTTTCGTGTGTAATGCATTGATCCAAATGTATAGTGAATGTGGGAGCTTGGTGTTGGCACGCCTAGTATTTGATGAAATGATTGAAAGAGATGTGGTTTCTTGGAGTACCATGATTAATAGCTATGTGAGGAACAGAGTGTTTGGTGAGGCATTGGAACTTATAAGGGAGATGCATTGCTTGCAAGTTAAGCCTAGTGAGGTTGCAATGATAAGCATGGTTAGTTTATTTGCTGACATTGCTGATGCGAAAATGGGGAAAGCAATGCATGCTTATGTTGCGAGGAATAGCAGTAATGAGAGAATGGTGGTTCATGTTACTACTGCTTTAGTAGATATGTATGTCAAGTGTGGGAATTTGGCTTATGGAAGGAGGCTGTTTGATGGGTTGGCTCAGAAAAGTGTTGTTTCCTGGACCGCGATGATTGCGGGGTGCATTCGTTGCAATGAGGTAGAAGAGGGGGTGAAACTTTTCAAGAGAATGCTGGAGGAGAGGAAGTTTCCTAATGAGATTACAATGTTGAGTTTGGTTATCGGGTCGGGGTCTGTTGGAGCTCTGGAATTGGGGAAGTGGCTGCATGCCTATGTTTTGAGAAATGGGTTTATCGTGTCTTTGGCTTTGGCTACTGCTTTGGTTGATATGTATGGGAAGTGTGGTGAAGCCGAATATGCAAGGGCTGTGTTTGACAGCATGGAGAAGAAAGATGTCATGATTTGGAGTGCTCTGATCTCGGCTTATGCACGCTCCAATCGTACTAATCAGGCTTCGGAGCTCTTTGCCCGGATGAAGGATAGTGGAATAAGGCCAAATCAAGTTACAATGGTTAGCCTCATTTCACTATGTGCAGAAGTAGGAGCCCTTGACCTGGGAAAATGGGTTCATTCTTACATAAACCAGCAACGGATAGAAGTTGATGTGATACTAAGAACAGTTCTAGTGGACATGTATGCAAAATGTGGGGAGATAGATGTGGCTCTCAGGCTGTTTAGTGAAGCCAGATATCGAGACAGTCGAATGTGGAATGCTATGATCACTGGATTTTCCATGCATGGTTGTGGGAAACAAGCTTTAGAGCTCTTTGAAGAAATGCAGAGAGCAGGTGTTGAGCCTAACGACATCACATTTATAGGGCTACTTCATGCTTGTAGCCATGCTGGGTTGGTGGCAGATGGAAAGAAGGTTTTCGATAAAATGGTACTTGACTTTGGCTTGGCTCCAAAGGTTGAGCACTATGGATGCATGGTGGATTTGCTTGGCCGAGCTGGGAAGCTCGATGAGGCTCACAAGTTGATCAAAAGCATGCCCGTGGAGCCTAACGCAATTGTTTGGGGCTCCCTGCTTGCTGCCTGCAAAATTCATAAGAGTCCCAACTTGGCTGAAGTGGCAGCAAGACAACTGCTTGAGTTGGAACCTCAAAATTGTGGTTACAACGTTCTGATGTCAAACATCTATGCAGCATCAAACAGATGGATTGATGTTGCTGGGGTTAGAAAAGCTATGAAAGATAAAGGAACCAAGAAAGAACCAGGTCTCAGCTCAATTGAAGTAAATGGTGCAGTTCATGACTTCATGATGGGTGATAAAACACACCCGCAAGCAAGAAAAATTTATGAAATGCTGGCTGAGATGATCAAGAAGCTAAAAGAGGCTGGATACACTCCTAATACATCTGTGGTTTTGCAGAACATAGATGAGGAAGAGAAAGAAACTGCGGTAAACTATCATAGTGAGAAACTGGCCATGGCATTTGGTCTCATCAGTACTGCTGCAGGTACCCCAATTCGGATTGTAAAAAATCTCCGAGTTTGTGATGACTGTCACACGGCAACAAAGCTGTTATCAAAGATTTATGGCAGAGTAGTGATAGTAAGGGACCGTAATCGCTTTCACCACTTCATAGAAGGATCTTGTTCTTGTGGTGACTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

685

Amino Acids

75.95

Weight (kDa)

7.24

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 71 - 116 3.4e-07 PPR repeat family
PPR_2 PF13041 175 - 217 9.5e-08 PPR repeat family
PPR PF01535 177 - 205 1.8e-06 PPR repeat
PPR_2 PF13041 275 - 323 4.5e-11 PPR repeat family
PPR_3 PF13812 276 - 322 1.7e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 377 - 424 4.1e-12 PPR repeat family
PPR PF01535 380 - 409 8.9e-08 PPR repeat
E_motif PF20431 498 - 556 8.6e-19 E motif
Eplus_motif PF20430 561 - 588 9.2e-07 E+ motif
DYW_deaminase PF14432 592 - 684 2.7e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018855)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02300
malus_domestica MD12G1245600.v1.1
prunus_persica Prupe.6G348400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450051
rosa_laevigata RLG00000025761
rosa_multiflora Rmu_sc0002646.1_g000023
rosa_rugosa Rorug02G0625100
rosa_samantha Rh3DG024800
rosa_wichuraiana Rw3G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
AarI CACCTGC 1 cut(s) 1211
Acc36I ACCTGC 2 cut(s) 1211, 1883
Acc65I GGTACC 1 cut(s) 1895
AccB1I GGYRCC 2 cut(s) 5, 1895
AccII CGCG 1 cut(s) 542
AciI CCGC 5 cut(s) 108, 540, 551, 1715, 1835
AclI AACGTT 1 cut(s) 1554
AclWI GGATC 2 cut(s) 139, 2035
AcoI YGGCCR 2 cut(s) 1378, 1860
AcsI RAATTY 3 cut(s) 478, 1476, 1728
AcuI CTGAAG 1 cut(s) 1521
AdeI CACNNNGTG 1 cut(s) 965
AfaI GTAC 5 cut(s) 232, 877, 1320, 1885, 1897
AfiI CCNNNNNNNGG 3 cut(s) 910, 988, 1905
AflIII ACRYGT 1 cut(s) 1065
AgsI TTSAA 4 cut(s) 209, 598, 1205, 1667
AjnI CCWGG 3 cut(s) 533, 987, 1648
AloI GAACNNNNNNTCC 2 cut(s) 984, 1016
Alw21I GWGCWC 5 cut(s) 679, 847, 897, 1200, 1353
Alw26I GTCTC 4 cut(s) 77, 1122, 1658, 1880
AlwI GGATC 2 cut(s) 139, 2035
AoxI GGCC 4 cut(s) 45, 926, 1378, 1860
ApeKI GCWGC 5 cut(s) 697, 1466, 1508, 1577, 1889
ApoI RAATTY 3 cut(s) 478, 1476, 1728
AseI ATTAAT 1 cut(s) 240
Asp700I GAANNNNTTC 2 cut(s) 593, 1304
Asp718I GGTACC 1 cut(s) 1895
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 537, 1996
AsuC2I CCSGG 1 cut(s) 904
AsuHPI GGTGA 6 cut(s) 281, 598, 791, 1712, 2003, 2054
AvaII GGWCC 2 cut(s) 537, 1996
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 1862
BanI GGYRCC 2 cut(s) 5, 1895
BanII GRGCYC 5 cut(s) 679, 897, 982, 1200, 1457
Bbv12I GWGCWC 5 cut(s) 679, 847, 897, 1200, 1353
BbvI GCAGC 5 cut(s) 684, 1453, 1520, 1589, 1876
BccI CCATC 5 cut(s) 40, 500, 1286, 1584, 1690
BceAI ACGGC 1 cut(s) 1962
BciT130I CCWGG 3 cut(s) 535, 989, 1650
BciVI GTATCC 1 cut(s) 1769
BclI TGATCA 3 cut(s) 1152, 1413, 1752
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 4 cut(s) 77, 1122, 1658, 1880
BfaI CTAG 3 cut(s) 188, 318, 1058
BfmI CTRYAG 1 cut(s) 1890
BfuAI ACCTGC 2 cut(s) 1211, 1883
BfuI GTATCC 1 cut(s) 1769
BisI GCNGC 5 cut(s) 698, 1467, 1509, 1578, 1890
BlsI GCNGC 5 cut(s) 699, 1468, 1510, 1579, 1891
BmcAI AGTACT 1 cut(s) 1885
Bme1390I CCNGG 4 cut(s) 535, 904, 989, 1650
Bme18I GGWCC 2 cut(s) 537, 1996
BmgT120I GGNCC 2 cut(s) 537, 1996
BmiI GGNNCC 9 cut(s) 7, 979, 1338, 1434, 1456, 1533, 1636, 1897, 1997
BmrFI CCNGG 4 cut(s) 535, 904, 989, 1650
BmsI GCATC 4 cut(s) 285, 358, 1349, 1589
BpmI CTGGAG 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 26, 1544
BpuMI CCSGG 1 cut(s) 904
BsaI GGTCTC 3 cut(s) 77, 1658, 1880
BsaJI CCNNGG 4 cut(s) 88, 988, 1428, 1863
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 3 cut(s) 910, 988, 1905
Bse1I ACTGG 2 cut(s) 1162, 1863
Bse3DI GCAATG 5 cut(s) 298, 336, 360, 393, 574
BseBI CCWGG 3 cut(s) 535, 989, 1650
BseDI CCNNGG 4 cut(s) 88, 988, 1428, 1863
BseGI GGATG 2 cut(s) 912, 1364
BseLI CCNNNNNNNGG 3 cut(s) 910, 988, 1905
BseMI GCAATG 5 cut(s) 298, 336, 360, 393, 574
BseMII CTCAG 4 cut(s) 530, 1114, 1669, 1737
BseNI ACTGG 2 cut(s) 1162, 1863
BseRI GAGGAG 1 cut(s) 626
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 5 cut(s) 684, 1453, 1520, 1589, 1876
BseYI CCCAGC 3 cut(s) 1277, 1385, 1604
BsgI GTGCAG 2 cut(s) 987, 1698
Bsh1236I CGCG 1 cut(s) 542
BshFI GGCC 4 cut(s) 47, 928, 1380, 1862
BshNI GGYRCC 2 cut(s) 5, 1895
BsiHKAI GWGCWC 5 cut(s) 679, 847, 897, 1200, 1353
BsiSI CCGG 1 cut(s) 904
BslFI GGGAC 2 cut(s) 1473, 2009
BslI CCNNNNNNNGG 3 cut(s) 910, 988, 1905
BsmAI GTCTC 4 cut(s) 77, 1122, 1658, 1880
BsmFI GGGAC 2 cut(s) 1473, 2009
BsmI GAATGC 3 cut(s) 558, 609, 1150
BsnI GGCC 4 cut(s) 47, 928, 1380, 1862
Bso31I GGTCTC 3 cut(s) 77, 1658, 1880
Bsp1286I GDGCHC 8 cut(s) 8, 679, 847, 897, 982, 1200, 1353, 1457
Bsp143I GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
Bsp19I CCATGG 2 cut(s) 88, 1863
BspACI CCGC 5 cut(s) 108, 540, 551, 1715, 1835
BspANI GGCC 4 cut(s) 47, 928, 1380, 1862
BspCNI CTCAG 4 cut(s) 529, 1113, 1668, 1738
BspFNI CGCG 1 cut(s) 542
BspHI TCATGA 3 cut(s) 831, 1684, 1692
BspLI GGNNCC 9 cut(s) 7, 979, 1338, 1434, 1456, 1533, 1636, 1897, 1997
BspMAI CTGCAG 1 cut(s) 1894
BspMI ACCTGC 2 cut(s) 1211, 1883
BspPI GGATC 2 cut(s) 139, 2035
BspT107I GGYRCC 2 cut(s) 5, 1895
BspTNI GGTCTC 3 cut(s) 77, 1658, 1880
BsrDI GCAATG 5 cut(s) 298, 336, 360, 393, 574
BsrI ACTGG 2 cut(s) 1162, 1863
BssECI CCNNGG 4 cut(s) 88, 988, 1428, 1863
BssMI GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
BssT1I CCWWGG 2 cut(s) 88, 1863
Bst2UI CCWGG 3 cut(s) 535, 989, 1650
Bst4CI ACNGT 4 cut(s) 1054, 1133, 1940, 2000
Bst6I CTCTTC 3 cut(s) 73, 573, 1815
BstAPI GCANNNNNTGC 3 cut(s) 304, 392, 564
BstDEI CTNAG 5 cut(s) 516, 1046, 1100, 1655, 1746
BstDSI CCRYGG 3 cut(s) 88, 1428, 1863
BstF5I GGATG 2 cut(s) 912, 1364
BstFNI CGCG 1 cut(s) 542
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 6 cut(s) 147, 852, 1155, 1416, 1755, 2030
BstMAI GTCTC 4 cut(s) 77, 1122, 1658, 1880
BstMBI GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
BstNI CCWGG 3 cut(s) 535, 989, 1650
BstNSI RCATGY 4 cut(s) 395, 704, 1069, 1426
BstSCI CCNGG 4 cut(s) 533, 902, 987, 1648
BstSFI CTRYAG 1 cut(s) 1890
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 542
BstV1I GCAGC 5 cut(s) 684, 1453, 1520, 1589, 1876
BstX2I RGATCY 1 cut(s) 2027
BstYI RGATCY 1 cut(s) 2027
BsuI GTATCC 1 cut(s) 1769
BsuRI GGCC 4 cut(s) 47, 928, 1380, 1862
BtgI CCRYGG 3 cut(s) 88, 1428, 1863
BtgZI GCGATG 1 cut(s) 557
BtsCI GGATG 2 cut(s) 912, 1364
BtsIMutI CAGTG 1 cut(s) 1155
BveI ACCTGC 2 cut(s) 1211, 1883
CciI TCATGA 3 cut(s) 831, 1684, 1692
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 537, 1996
CseI GACGC 1 cut(s) 131
CsiI ACCWGGT 1 cut(s) 1648
Csp6I GTAC 5 cut(s) 231, 876, 1319, 1884, 1896
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviQI GTAC 5 cut(s) 231, 876, 1319, 1884, 1896
DdeI CTNAG 5 cut(s) 516, 1046, 1100, 1655, 1746
DpnI GATC 6 cut(s) 146, 851, 1154, 1415, 1754, 2029
DpnII GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
DraIII CACNNNGTG 1 cut(s) 965
EaeI YGGCCR 2 cut(s) 1378, 1860
Eam1104I CTCTTC 3 cut(s) 73, 573, 1815
EarI CTCTTC 3 cut(s) 73, 573, 1815
Ecl136II GAGCTC 3 cut(s) 677, 895, 1198
Eco130I CCWWGG 2 cut(s) 88, 1863
Eco147I AGGCCT 1 cut(s) 47
Eco24I GRGCYC 5 cut(s) 679, 897, 982, 1200, 1457
Eco31I GGTCTC 3 cut(s) 77, 1658, 1880
Eco32I GATATC 1 cut(s) 1124
Eco47I GGWCC 2 cut(s) 537, 1996
Eco53kI GAGCTC 3 cut(s) 677, 895, 1198
Eco57I CTGAAG 1 cut(s) 1521
EcoICRI GAGCTC 3 cut(s) 677, 895, 1198
EcoRII CCWGG 3 cut(s) 533, 987, 1648
EcoRV GATATC 1 cut(s) 1124
EcoT14I CCWWGG 2 cut(s) 88, 1863
EcoT22I ATGCAT 5 cut(s) 142, 300, 393, 1173, 1364
EcoT38I GRGCYC 5 cut(s) 679, 897, 982, 1200, 1457
ErhI CCWWGG 2 cut(s) 88, 1863
FaqI GGGAC 2 cut(s) 1473, 2009
FauI CCCGC 2 cut(s) 544, 1722
FbaI TGATCA 3 cut(s) 1152, 1413, 1752
Fnu4HI GCNGC 5 cut(s) 698, 1467, 1509, 1578, 1890
FokI GGATG 2 cut(s) 919, 1371
FriOI GRGCYC 5 cut(s) 679, 897, 982, 1200, 1457
Fsp4HI GCNGC 5 cut(s) 698, 1467, 1509, 1578, 1890
FspBI CTAG 3 cut(s) 188, 318, 1058
GlaI GCGC 1 cut(s) 99
GluI GCNGC 5 cut(s) 698, 1467, 1509, 1578, 1890
GsaI CCCAGC 3 cut(s) 1281, 1389, 1608
GsuI CTGGAG 1 cut(s) 629
HaeIII GGCC 4 cut(s) 47, 928, 1380, 1862
HapII CCGG 1 cut(s) 904
HgaI GACGC 1 cut(s) 131
HhaI GCGC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 57, 1188
HinfI GANTC 1 cut(s) 1486
HpaII CCGG 1 cut(s) 904
HphI GGTGA 6 cut(s) 281, 598, 791, 1712, 2003, 2054
Hpy166II GTNNAC 3 cut(s) 16, 1063, 1840
Hpy188I TCNGA 6 cut(s) 519, 849, 892, 1560, 1908, 1925
Hpy188III TCNNGA 7 cut(s) 598, 680, 832, 1127, 1685, 1693, 1756
Hpy8I GTNNAC 3 cut(s) 16, 1063, 1840
HpyAV CCTTC 4 cut(s) 486, 904, 1294, 2018
HpyCH4III ACNGT 4 cut(s) 1054, 1133, 1940, 2000
HpyCH4IV ACGT 1 cut(s) 1554
HpyF3I CTNAG 5 cut(s) 516, 1046, 1100, 1655, 1746
HpySE526I ACGT 1 cut(s) 1554
HspAI GCGC 1 cut(s) 98
KpnI GGTACC 1 cut(s) 1899
Ksp22I TGATCA 3 cut(s) 1152, 1413, 1752
Kzo9I GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
LmnI GCTCC 8 cut(s) 168, 674, 872, 892, 977, 1342, 1432, 1460
Lsp1109I GCAGC 5 cut(s) 684, 1453, 1520, 1589, 1876
LweI GCATC 4 cut(s) 285, 358, 1349, 1589
MabI ACCWGGT 1 cut(s) 1648
MaeI CTAG 3 cut(s) 188, 318, 1058
MaeII ACGT 1 cut(s) 1554
MaeIII GTNAC 6 cut(s) 119, 439, 937, 1547, 1940, 2042
MalI GATC 6 cut(s) 146, 851, 1154, 1415, 1754, 2029
MboI GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
MboII GAAGA 5 cut(s) 90, 590, 832, 1217, 1832
MfeI CAATTG 2 cut(s) 1443, 1662
MflI RGATCY 1 cut(s) 2027
MhlI GDGCHC 8 cut(s) 8, 679, 847, 897, 982, 1200, 1353, 1457
MlsI TGGCCA 1 cut(s) 1862
MluCI AATT 8 cut(s) 478, 683, 1443, 1476, 1540, 1662, 1728, 1902
MluNI TGGCCA 1 cut(s) 1862
MlyI GAGTC 1 cut(s) 1495
MmeI TCCRAC 2 cut(s) 652, 1509
Mox20I TGGCCA 1 cut(s) 1862
Mph1103I ATGCAT 5 cut(s) 142, 300, 393, 1173, 1364
MroXI GAANNNNTTC 2 cut(s) 593, 1304
MscI TGGCCA 1 cut(s) 1862
MseI TTAA 2 cut(s) 240, 312
MslI CAYNNNNRTG 4 cut(s) 396, 705, 1176, 1427
Msp20I TGGCCA 1 cut(s) 1862
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 4 cut(s) 535, 904, 989, 1650
MunI CAATTG 2 cut(s) 1443, 1662
Mva1269I GAATGC 3 cut(s) 558, 609, 1150
MvaI CCWGG 3 cut(s) 535, 989, 1650
MvnI CGCG 1 cut(s) 542
NciI CCSGG 1 cut(s) 904
NcoI CCATGG 2 cut(s) 88, 1863
NdeII GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
NlaIV GGNNCC 9 cut(s) 7, 979, 1338, 1434, 1456, 1533, 1636, 1897, 1997
NmeAIII GCCGAG 2 cut(s) 833, 1406
NmuCI GTSAC 3 cut(s) 119, 1940, 2042
NsiI ATGCAT 5 cut(s) 142, 300, 393, 1173, 1364
NspI RCATGY 4 cut(s) 395, 704, 1069, 1426
PaeI GCATGC 3 cut(s) 395, 704, 1426
PagI TCATGA 3 cut(s) 831, 1684, 1692
PaqCI CACCTGC 1 cut(s) 1211
PceI AGGCCT 1 cut(s) 47
PciI ACATGT 1 cut(s) 1065
PcsI WCGNNNNNNNCGW 2 cut(s) 871, 1132
PctI GAATGC 3 cut(s) 558, 609, 1150
PdmI GAANNNNTTC 2 cut(s) 593, 1304
PfoI TCCNGGA 1 cut(s) 533
PkrI GCNGC 5 cut(s) 699, 1468, 1510, 1579, 1891
PleI GAGTC 1 cut(s) 1494
PpsI GAGTC 1 cut(s) 1494
PscI ACATGT 1 cut(s) 1065
PshBI ATTAAT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 287
Psp124BI GAGCTC 3 cut(s) 679, 897, 1200
Psp1406I AACGTT 1 cut(s) 1554
Psp6I CCWGG 3 cut(s) 533, 987, 1648
PspFI CCCAGC 3 cut(s) 1277, 1385, 1604
PspGI CCWGG 3 cut(s) 533, 987, 1648
PspN4I GGNNCC 9 cut(s) 7, 979, 1338, 1434, 1456, 1533, 1636, 1897, 1997
PspPI GGNCC 2 cut(s) 537, 1996
PstI CTGCAG 1 cut(s) 1894
PsuI RGATCY 1 cut(s) 2027
RsaI GTAC 5 cut(s) 232, 877, 1320, 1885, 1897
RsaNI GTAC 5 cut(s) 231, 876, 1319, 1884, 1896
RseI CAYNNNNRTG 4 cut(s) 396, 705, 1176, 1427
SacI GAGCTC 3 cut(s) 679, 897, 1200
SaqAI TTAA 2 cut(s) 240, 312
SatI GCNGC 5 cut(s) 698, 1467, 1509, 1578, 1890
Sau3AI GATC 6 cut(s) 144, 849, 1152, 1413, 1752, 2027
Sau96I GGNCC 2 cut(s) 537, 1996
ScaI AGTACT 1 cut(s) 1885
SchI GAGTC 1 cut(s) 1495
ScrFI CCNGG 4 cut(s) 535, 904, 989, 1650
SduI GDGCHC 8 cut(s) 8, 679, 847, 897, 982, 1200, 1353, 1457
SexAI ACCWGGT 1 cut(s) 1648
SfaNI GCATC 4 cut(s) 285, 358, 1349, 1589
SfcI CTRYAG 1 cut(s) 1890
SinI GGWCC 2 cut(s) 537, 1996
SmiMI CAYNNNNRTG 4 cut(s) 396, 705, 1176, 1427
SmlI CTYRAG 2 cut(s) 41, 1523
SmoI CTYRAG 2 cut(s) 41, 1523
SphI GCATGC 3 cut(s) 395, 704, 1426
Sse9I AATT 8 cut(s) 478, 683, 1443, 1476, 1540, 1662, 1728, 1902
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 5 cut(s) 108, 540, 551, 1715, 1835
SspMI CTAG 3 cut(s) 188, 318, 1058
SstI GAGCTC 3 cut(s) 679, 897, 1200
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 4 cut(s) 533, 902, 987, 1648
StyI CCWWGG 2 cut(s) 88, 1863
TaaI ACNGT 4 cut(s) 1054, 1133, 1940, 2000
TaiI ACGT 1 cut(s) 1557
TaqI TCGA 4 cut(s) 1126, 1135, 1308, 1395
TasI AATT 8 cut(s) 478, 683, 1443, 1476, 1540, 1662, 1728, 1902
TatI WGTACW 1 cut(s) 1883
Tru1I TTAA 2 cut(s) 240, 312
Tru9I TTAA 2 cut(s) 240, 312
TscAI CASTG 1 cut(s) 1162
TseFI GTSAC 3 cut(s) 119, 1940, 2042
TseI GCWGC 5 cut(s) 697, 1466, 1508, 1577, 1889
Tsp45I GTSAC 3 cut(s) 119, 1940, 2042
TspGWI ACGGA 1 cut(s) 1039
TspRI CASTG 1 cut(s) 1162
VpaK11BI GGWCC 2 cut(s) 537, 1996
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 3 cut(s) 478, 1476, 1728
XceI RCATGY 4 cut(s) 395, 704, 1069, 1426
XmnI GAANNNNTTC 2 cut(s) 593, 1304
XspI CTAG 3 cut(s) 188, 318, 1058
ZrmI AGTACT 1 cut(s) 1885
Zsp2I ATGCAT 5 cut(s) 142, 300, 393, 1173, 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.