Rorug02G0625100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018855
Physical Location & Seq
Forward (+)
74114016 .. 74114987
972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0625100.1

Sequence Viewer

Length: 774 bp
ATGTCGCAGACCGACGACAACTGCCCTCTTCAGAAATGGTGTCACTTGTGCGGTCAGATTCAGCCTTATGCGAGGGGACCTATGGCCGCAGAATGCCCACCTCGTGTAGGTGAACACCCTCGTCAAGCACCACCAGATGAGAGTCCGAGATGCCCTTTATGTGACGGGAACATGAGTATCATGGCATATTGGGTGCGCAAAATAAAGAGGGAGCGACCCTATTGGCAGTGTTGTCGAACTAATGGGTACCCTTATTGCAGGGGTTATCGGTGGGTAGATGAGATGGCGGGAGGATCCACGGTGTGTAATATAATCCCTACGCATCGCATCTCTTCACAAGTCCTAATGACCAAAAACCTATTAGTTCATACAAGAATACTGGGCTATACTGACAGTGGTGCGTCTCAGAAATGCAGGGGGAGAATTGGAAAACCGAATGCATATGCAGAACTCACGATGTATGGACCTAATTGCGAAATATGCCGCCGCCTGATGTGTTCCTACATATCACAATCTGAGGACAATTTTGGTAGGCCTTATTGGTACTGCTATGGGTTCCCGGAGAGTCTGGGCCGACGGTCCACAGACCATCATTCATTTGGGGAGATGAGTGCAAGATCCAGTGTACGGGTTTCAACGGGTTCACTGAGTATGAAGAACCTGAGTAAACGCCTCATGCCGTTCCGGACTACAATGCCTAGGGATTCGGTTTTTGTCACGGTACTACTCGCCGTAATCCCCAAATCATGTACAACTTTCAGTTATGAGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

257

Amino Acids

29.32

Weight (kDa)

9.13

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018855)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g02300
malus_domestica MD12G1245600.v1.1
prunus_persica Prupe.6G348400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0450051
rosa_laevigata RLG00000025761
rosa_multiflora Rmu_sc0002646.1_g000023
rosa_rugosa Rorug02G0625100
rosa_samantha Rh3DG024800
rosa_wichuraiana Rw3G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 684
AciI CCGC 5 cut(s) 51, 87, 287, 484, 487
AclWI GGATC 3 cut(s) 288, 301, 612
AcoI YGGCCR 1 cut(s) 84
AcuI CTGAAG 1 cut(s) 14
AdeI CACNNNGTG 2 cut(s) 104, 303
AfaI GTAC 5 cut(s) 248, 545, 627, 723, 751
AfiI CCNNNNNNNGG 2 cut(s) 107, 627
AgsI TTSAA 1 cut(s) 636
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 3 cut(s) 288, 301, 612
Aor13HI TCCGGA 1 cut(s) 684
AoxI GGCC 3 cut(s) 84, 533, 571
Asp718I GGTACC 1 cut(s) 246
AspA2I CCTAGG 1 cut(s) 698
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 4 cut(s) 77, 464, 571, 579
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 3 cut(s) 77, 464, 579
AvrII CCTAGG 1 cut(s) 698
BaeI ACNNNNGTAYC 2 cut(s) 160, 193
BamHI GGATCC 1 cut(s) 293
BanI GGYRCC 1 cut(s) 246
BauI CACGAG 1 cut(s) 102
BccI CCATC 2 cut(s) 277, 597
BceAI ACGGC 2 cut(s) 664, 716
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 1 cut(s) 699
BisI GCNGC 3 cut(s) 87, 484, 487
BlnI CCTAGG 1 cut(s) 698
BlsI GCNGC 3 cut(s) 88, 485, 488
Bme1390I CCNGG 1 cut(s) 560
Bme18I GGWCC 3 cut(s) 77, 464, 579
BmgT120I GGNCC 4 cut(s) 77, 464, 571, 579
BmiI GGNNCC 4 cut(s) 78, 248, 295, 557
BmrFI CCNGG 1 cut(s) 560
BmrI ACTGGG 1 cut(s) 389
BmsI GCATC 3 cut(s) 140, 331, 336
BmuI ACTGGG 1 cut(s) 389
BpuMI CCSGG 1 cut(s) 560
BsaJI CCNNGG 2 cut(s) 297, 698
BsaWI WCCGGW 1 cut(s) 684
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 627
Bse1I ACTGG 2 cut(s) 384, 621
BseAI TCCGGA 1 cut(s) 684
BseDI CCNNGG 2 cut(s) 297, 698
BseLI CCNNNNNNNGG 2 cut(s) 107, 627
BseMII CTCAG 4 cut(s) 419, 507, 638, 653
BseNI ACTGG 2 cut(s) 384, 621
BshFI GGCC 3 cut(s) 86, 535, 573
BshNI GGYRCC 1 cut(s) 246
BsiSI CCGG 2 cut(s) 560, 685
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 107, 627
BsmAI GTCTC 1 cut(s) 408
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 2 cut(s) 98, 442
BsnI GGCC 3 cut(s) 86, 535, 573
Bsp13I TCCGGA 1 cut(s) 684
Bsp1407I TGTACA 1 cut(s) 749
Bsp143I GATC 2 cut(s) 293, 617
BspACI CCGC 5 cut(s) 51, 87, 287, 484, 487
BspANI GGCC 3 cut(s) 86, 535, 573
BspCNI CTCAG 4 cut(s) 418, 508, 639, 654
BspEI TCCGGA 1 cut(s) 684
BspLI GGNNCC 4 cut(s) 78, 248, 295, 557
BspPI GGATC 3 cut(s) 288, 301, 612
BspT107I GGYRCC 1 cut(s) 246
BsrGI TGTACA 1 cut(s) 749
BsrI ACTGG 2 cut(s) 384, 621
BssECI CCNNGG 2 cut(s) 297, 698
BssMI GATC 2 cut(s) 293, 617
BssSI CACGAG 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 698
Bst2BI CACGAG 1 cut(s) 102
Bst4CI ACNGT 4 cut(s) 301, 395, 579, 721
Bst6I CTCTTC 2 cut(s) 33, 337
BstAUI TGTACA 1 cut(s) 749
BstDEI CTNAG 4 cut(s) 405, 516, 647, 662
BstDSI CCRYGG 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 2 cut(s) 296, 620
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 2 cut(s) 293, 617
BstMWI GCNNNNNNNGC 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 558
BstX2I RGATCY 2 cut(s) 293, 617
BstYI RGATCY 2 cut(s) 293, 617
BsuRI GGCC 3 cut(s) 86, 535, 573
BtgI CCRYGG 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 4 cut(s) 233, 400, 628, 644
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 4 cut(s) 77, 464, 571, 579
CseI GACGC 1 cut(s) 390
Csp6I GTAC 5 cut(s) 247, 544, 626, 722, 750
CviAII CATG 4 cut(s) 172, 181, 676, 747
CviJI RGCY 5 cut(s) 64, 86, 384, 535, 573
CviKI_1 RGCY 5 cut(s) 64, 86, 384, 535, 573
CviQI GTAC 5 cut(s) 247, 544, 626, 722, 750
DdeI CTNAG 4 cut(s) 405, 516, 647, 662
DpnI GATC 2 cut(s) 295, 619
DpnII GATC 2 cut(s) 293, 617
DraIII CACNNNGTG 2 cut(s) 104, 303
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 2 cut(s) 33, 337
EarI CTCTTC 2 cut(s) 33, 337
Eco130I CCWWGG 1 cut(s) 698
Eco147I AGGCCT 1 cut(s) 535
Eco47I GGWCC 3 cut(s) 77, 464, 579
Eco57I CTGAAG 1 cut(s) 14
EcoNI CCTNNNNNAGG 1 cut(s) 105
EcoO109I RGGNCCY 1 cut(s) 77
EcoT14I CCWWGG 1 cut(s) 698
EcoT22I ATGCAT 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 698
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 4 cut(s) 175, 184, 679, 750
FaqI GGGAC 1 cut(s) 90
FatI CATG 4 cut(s) 171, 180, 675, 746
FauI CCCGC 1 cut(s) 280
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 87, 484, 487
Fsp4HI GCNGC 3 cut(s) 87, 484, 487
FspBI CTAG 1 cut(s) 699
FspI TGCGCA 1 cut(s) 197
GlaI GCGC 1 cut(s) 197
GluI GCNGC 3 cut(s) 87, 484, 487
HaeIII GGCC 3 cut(s) 86, 535, 573
HapII CCGG 2 cut(s) 560, 685
HgaI GACGC 1 cut(s) 390
HhaI GCGC 1 cut(s) 198
Hin1II CATG 4 cut(s) 175, 184, 679, 750
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 4 cut(s) 58, 142, 565, 704
HpaII CCGG 2 cut(s) 560, 685
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 5 cut(s) 113, 582, 626, 644, 668
Hpy188I TCNGA 5 cut(s) 33, 57, 147, 408, 517
Hpy188III TCNNGA 2 cut(s) 454, 685
Hpy8I GTNNAC 5 cut(s) 113, 582, 626, 644, 668
Hpy99I CGWCG 2 cut(s) 17, 579
HpyCH4III ACNGT 4 cut(s) 301, 395, 579, 721
HpyCH4V TGCA 5 cut(s) 258, 414, 440, 446, 614
HpyF10VI GCNNNNNNNGC 1 cut(s) 480
HpyF3I CTNAG 4 cut(s) 405, 516, 647, 662
Hsp92II CATG 4 cut(s) 175, 184, 679, 750
HspAI GCGC 1 cut(s) 196
Kpn2I TCCGGA 1 cut(s) 684
KpnI GGTACC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 293, 617
LmnI GCTCC 1 cut(s) 211
LweI GCATC 3 cut(s) 140, 331, 336
MaeI CTAG 1 cut(s) 699
MaeIII GTNAC 3 cut(s) 41, 161, 715
MalI GATC 2 cut(s) 295, 619
MboI GATC 2 cut(s) 293, 617
MboII GAAGA 3 cut(s) 20, 324, 667
MflI RGATCY 2 cut(s) 293, 617
MluCI AATT 3 cut(s) 423, 469, 523
MlyI GAGTC 2 cut(s) 151, 574
MnlI CCTC 8 cut(s) 36, 66, 111, 129, 201, 284, 511, 683
Mph1103I ATGCAT 1 cut(s) 442
MroI TCCGGA 1 cut(s) 684
MspI CCGG 2 cut(s) 560, 685
MspR9I CCNGG 1 cut(s) 560
Mva1269I GAATGC 2 cut(s) 98, 442
MwoI GCNNNNNNNGC 1 cut(s) 480
NciI CCSGG 1 cut(s) 560
NdeI CATATG 1 cut(s) 442
NdeII GATC 2 cut(s) 293, 617
NlaIII CATG 4 cut(s) 175, 184, 679, 750
NlaIV GGNNCC 4 cut(s) 78, 248, 295, 557
NmuCI GTSAC 3 cut(s) 41, 161, 715
NsbI TGCGCA 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 442
PceI AGGCCT 1 cut(s) 535
PctI GAATGC 2 cut(s) 98, 442
PfeI GAWTC 2 cut(s) 58, 704
PfoI TCCNGGA 1 cut(s) 558
PkrI GCNGC 3 cut(s) 88, 485, 488
PleI GAGTC 2 cut(s) 150, 573
PpsI GAGTC 2 cut(s) 150, 573
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
PspN4I GGNNCC 4 cut(s) 78, 248, 295, 557
PspPI GGNCC 4 cut(s) 77, 464, 571, 579
PspPPI RGGWCCY 1 cut(s) 77
PsuI RGATCY 2 cut(s) 293, 617
RsaI GTAC 5 cut(s) 248, 545, 627, 723, 751
RsaNI GTAC 5 cut(s) 247, 544, 626, 722, 750
SatI GCNGC 3 cut(s) 87, 484, 487
Sau3AI GATC 2 cut(s) 293, 617
Sau96I GGNCC 4 cut(s) 77, 464, 571, 579
SchI GAGTC 2 cut(s) 151, 574
ScrFI CCNGG 1 cut(s) 560
SetI ASST 6 cut(s) 82, 103, 112, 360, 469, 663
SfaNI GCATC 3 cut(s) 140, 331, 336
SinI GGWCC 3 cut(s) 77, 464, 579
Sse9I AATT 3 cut(s) 423, 469, 523
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 5 cut(s) 51, 87, 287, 484, 487
SspMI CTAG 1 cut(s) 699
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 558
StyI CCWWGG 1 cut(s) 698
TaaI ACNGT 4 cut(s) 301, 395, 579, 721
TaqI TCGA 1 cut(s) 235
TaqII GACCGA 1 cut(s) 26
TasI AATT 3 cut(s) 423, 469, 523
TatI WGTACW 1 cut(s) 749
TauI GCSGC 3 cut(s) 89, 486, 489
TfiI GAWTC 2 cut(s) 58, 704
TscAI CASTG 4 cut(s) 233, 400, 628, 651
TseFI GTSAC 3 cut(s) 41, 161, 715
Tsp45I GTSAC 3 cut(s) 41, 161, 715
TspDTI ATGAA 3 cut(s) 356, 585, 668
TspRI CASTG 4 cut(s) 233, 400, 628, 651
VpaK11BI GGWCC 3 cut(s) 77, 464, 579
XagI CCTNNNNNAGG 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 596
XmaJI CCTAGG 1 cut(s) 698
XspI CTAG 1 cut(s) 699
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.