FvH4_6g02371

transcription coactivator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015361
Physical Location & Seq
Reverse (-)
1368284 .. 1370399
2116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02371.t1

Sequence Viewer

Length: 366 bp
ATGATGCACTACAAGGAGGAAAAAGAGGCAAAGAAAGAAGCGTTCAGGAAGTACTTGGAATCCAGTGGAGTCCTTGATGCGCTCACCAAAGTTTTGGTTGCATTGTACGAGCAGAATGACAAGCCTTCCTCTGCGCTCGAGTTTGTTCAACAAAAGTTAGGAGGTCCATCTATTTCTGACTACGAGAAGCTGCAGGCTGAACTTTCGGATTTGCAGATGAAGTATAATCAACTTTTCGCAGCTTACCAAGAGACAAGTGCAGAGTTGGAGGGCCTTAAGAGCTCACAATCGAATACGACACATAATGAGGCATCAGGTTCTACCAAGGAGACCACTGCTGAGGAGGCTCAAAAGGAAAATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.55

Weight (kDa)

4.88

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14045 AT2G14045 AT2G14045 AT2G14045
fragaria_vesca FvH4_6g02371
malus_domestica MD12G1244800.v1.1
prunus_persica Prupe.6G347400_v2.0.a1
pyrus_communis pycom12g22460
rosa_chinensis RchiOBHm_Chr3g0450141
rosa_laevigata RLG00000025752
rosa_multiflora Rmu_ssc0000116.1_g000067
rosa_samantha Rh3AG025100 Rh3BG025700 Rh3CG024600 Rh3DG025700
rosa_wichuraiana Rw3G002010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 2 cut(s) 53, 107
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 3 cut(s) 190, 242, 282
AluI AGCT 3 cut(s) 190, 242, 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 2 cut(s) 245, 323
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 190, 239
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 2 cut(s) 82, 136
AspS9I GGNCC 2 cut(s) 164, 271
AsuHPI GGTGA 1 cut(s) 76
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 177, 251
BccI CCATC 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 245, 323
BfaI CTAG 1 cut(s) 364
BfmI CTRYAG 1 cut(s) 191
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 2 cut(s) 191, 240
BlsI GCNGC 2 cut(s) 192, 241
BmcAI AGTACT 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 2 cut(s) 164, 271
BmsI GCATC 2 cut(s) 67, 320
Bpu10I CCTNAGC 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 324
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 177, 251
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 273
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 245, 323
BsnI GGCC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 284
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 195
BspTI CTTAAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 323
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 324
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 339
BstHHI GCGC 2 cut(s) 82, 136
BstMAI GTCTC 2 cut(s) 245, 323
BstMWI GCNNNNNNNGC 2 cut(s) 279, 344
BstSFI CTRYAG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 177, 251
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 273
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 70, 333
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 2 cut(s) 82, 136
Cfr13I GGNCC 2 cut(s) 164, 271
Csp6I GTAC 2 cut(s) 52, 106
CviJI RGCY 7 cut(s) 124, 190, 197, 242, 273, 282, 347
CviKI_1 RGCY 7 cut(s) 124, 190, 197, 242, 273, 282, 347
CviQI GTAC 2 cut(s) 52, 106
DdeI CTNAG 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 1 cut(s) 324
FaiI YATR 2 cut(s) 225, 303
Fnu4HI GCNGC 2 cut(s) 191, 240
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 191, 240
FspBI CTAG 1 cut(s) 364
GlaI GCGC 2 cut(s) 81, 135
GluI GCNGC 2 cut(s) 191, 240
HaeIII GGCC 1 cut(s) 273
HhaI GCGC 2 cut(s) 82, 136
Hin6I GCGC 2 cut(s) 80, 134
HinP1I GCGC 2 cut(s) 80, 134
HinfI GANTC 2 cut(s) 59, 69
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 178, 208
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 135
HpyCH4V TGCA 5 cut(s) 7, 101, 193, 214, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 344
HpyF3I CTNAG 1 cut(s) 339
HspAI GCGC 2 cut(s) 80, 134
LpnPI CCDG 4 cut(s) 31, 76, 179, 300
Lsp1109I GCAGC 2 cut(s) 177, 251
LweI GCATC 2 cut(s) 67, 320
MaeI CTAG 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 1 cut(s) 358
MlyI GAGTC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 8 cut(s) 10, 19, 139, 155, 262, 301, 334, 337
MseI TTAA 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 279, 344
PaeR7I CTCGAG 1 cut(s) 137
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 192, 241
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 284
PspPI GGNCC 2 cut(s) 164, 271
PspXI VCTCGAGB 1 cut(s) 137
PstI CTGCAG 1 cut(s) 195
RsaI GTAC 2 cut(s) 53, 107
RsaNI GTAC 2 cut(s) 52, 106
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 2 cut(s) 191, 240
Sau96I GGNCC 2 cut(s) 164, 271
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 1 cut(s) 78
SduI GDGCHC 1 cut(s) 284
SetI ASST 5 cut(s) 166, 192, 244, 284, 319
SfaNI GCATC 2 cut(s) 67, 320
SfcI CTRYAG 1 cut(s) 191
Sfr274I CTCGAG 1 cut(s) 137
SinI GGWCC 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 137
SmlI CTYRAG 2 cut(s) 137, 275
SmoI CTYRAG 2 cut(s) 137, 275
Sse9I AATT 1 cut(s) 358
SspMI CTAG 1 cut(s) 364
SstI GAGCTC 1 cut(s) 284
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 2 cut(s) 138, 290
TasI AATT 1 cut(s) 358
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 2 cut(s) 70, 340
TseI GCWGC 2 cut(s) 190, 239
TspDTI ATGAA 1 cut(s) 233
TspRI CASTG 2 cut(s) 70, 340
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 164
XapI RAATTY 1 cut(s) 358
XhoI CTCGAG 1 cut(s) 137
XspI CTAG 1 cut(s) 364
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.