pycom12g22460

transcription coactivator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015361
Physical Location & Seq
Forward (+)
23337892 .. 23339963
2072 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22460.3

Sequence Viewer

Length: 537 bp
ATGAAGGCCCATACGTTCAAGAGGCCACGAAAGCAATGGTGTGACCCACTGAACTCTTTGGACCGTTGGCTGCACCAACAAGAAACAACCCAAGAAATCCCCCCACCCCACCCACCCAACCTCAGCACAGCAGATCAAAGAAAATACAAGAAGAAGAAGAAGAAGAAGAACATCATGTTTCACTACAAAGAGTTTTGTCAGGAAAAAGAAGCAAAGAAGGAAGCATTCAGGAAGTACTTAGAATCCAGTGGAGTTCTTGATGCCCTCACCAAAGTTCTGGTTGCTTTGTATGAGCAGAATGAGAAGCCTTCCTCTGCACTTGAGTTTGTTCAACAAAAGTTAGGGGGTCCATCTGTGTCTGATTACGAAAAGCTACAGTCTGAATTGTCCGAGTTGCAGAAAAAGTATAGCACACTTTCAGCAGCGTACCAAGAAACATGCACTGAGCTAGAGGGACTTAAGAGCTCACAATTACTTAACGTGGCCTCGCTTTCTATCAAAGACAAAGAGACCGCAGGCGAGGAGGAGAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.57

Weight (kDa)

8.94

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14045 AT2G14045 AT2G14045 AT2G14045
fragaria_vesca FvH4_6g02371
malus_domestica MD12G1244800.v1.1
prunus_persica Prupe.6G347400_v2.0.a1
pyrus_communis pycom12g22460
rosa_chinensis RchiOBHm_Chr3g0450141
rosa_laevigata RLG00000025752
rosa_multiflora Rmu_ssc0000116.1_g000067
rosa_samantha Rh3AG025100 Rh3BG025700 Rh3CG024600 Rh3DG025700
rosa_wichuraiana Rw3G002010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 513
AfaI GTAC 2 cut(s) 236, 428
AflII CTTAAG 1 cut(s) 458
AgsI TTSAA 2 cut(s) 19, 332
AluBI AGCT 3 cut(s) 373, 448, 465
AluI AGCT 3 cut(s) 373, 448, 465
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 1 cut(s) 503
AoxI GGCC 3 cut(s) 6, 23, 483
ApeKI GCWGC 2 cut(s) 70, 422
AspS9I GGNCC 3 cut(s) 7, 61, 347
AsuHPI GGTGA 1 cut(s) 259
AvaII GGWCC 2 cut(s) 61, 347
BanII GRGCYC 1 cut(s) 467
Bbv12I GWGCWC 1 cut(s) 467
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 57, 434
BccI CCATC 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 2 cut(s) 449, 535
BfmI CTRYAG 1 cut(s) 374
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 2 cut(s) 71, 423
BlsI GCNGC 2 cut(s) 72, 424
BmcAI AGTACT 1 cut(s) 236
Bme18I GGWCC 2 cut(s) 61, 347
BmgT120I GGNCC 3 cut(s) 7, 61, 347
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 136, 435
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 536
BseXI GCAGC 2 cut(s) 57, 434
BsgI GTGCAG 2 cut(s) 56, 300
BshFI GGCC 3 cut(s) 8, 25, 485
BsiHKAI GWGCWC 1 cut(s) 467
BslFI GGGAC 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 224
BsnI GGCC 3 cut(s) 8, 25, 485
Bso31I GGTCTC 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 513
BspANI GGCC 3 cut(s) 8, 25, 485
BspCNI CTCAG 2 cut(s) 135, 436
BspLI GGNNCC 1 cut(s) 348
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 246
BssMI GATC 1 cut(s) 133
Bst4CI ACNGT 2 cut(s) 65, 378
BstAFI CTTAAG 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 3 cut(s) 122, 238, 444
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 57, 434
BstXI CCANNNNNNTGG 1 cut(s) 277
BsuRI GGCC 3 cut(s) 8, 25, 485
BtsIMutI CAGTG 3 cut(s) 47, 253, 441
Cac8I GCNNGC 1 cut(s) 517
Cfr13I GGNCC 3 cut(s) 7, 61, 347
Csp6I GTAC 2 cut(s) 235, 427
CviAII CATG 2 cut(s) 175, 438
CviJI RGCY 8 cut(s) 8, 25, 70, 307, 373, 448, 465, 485
CviKI_1 RGCY 8 cut(s) 8, 25, 70, 307, 373, 448, 465, 485
CviQI GTAC 2 cut(s) 235, 427
DdeI CTNAG 3 cut(s) 122, 238, 444
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 467
Eco31I GGTCTC 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 61, 347
Eco53kI GAGCTC 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 467
FaeI CATG 2 cut(s) 178, 441
FaiI YATR 5 cut(s) 12, 176, 291, 408, 439
FaqI GGGAC 1 cut(s) 468
FatI CATG 2 cut(s) 174, 437
Fnu4HI GCNGC 2 cut(s) 71, 423
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 2 cut(s) 71, 423
FspBI CTAG 2 cut(s) 449, 535
GluI GCNGC 2 cut(s) 71, 423
HaeIII GGCC 3 cut(s) 8, 25, 485
Hin1II CATG 2 cut(s) 178, 441
HinfI GANTC 1 cut(s) 242
HphI GGTGA 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 361, 382, 391
Hpy188III TCNNGA 4 cut(s) 19, 200, 229, 257
HpyAV CCTTC 2 cut(s) 211, 318
HpyCH4III ACNGT 2 cut(s) 65, 378
HpyCH4IV ACGT 2 cut(s) 14, 480
HpyCH4V TGCA 4 cut(s) 73, 317, 397, 441
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 3 cut(s) 122, 238, 444
HpySE526I ACGT 2 cut(s) 14, 480
Hsp92II CATG 2 cut(s) 178, 441
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 5 cut(s) 185, 214, 259, 263, 501
Lsp1109I GCAGC 2 cut(s) 57, 434
LweI GCATC 1 cut(s) 250
MaeI CTAG 2 cut(s) 449, 535
MaeII ACGT 2 cut(s) 14, 480
MaeIII GTNAC 1 cut(s) 41
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 6 cut(s) 163, 166, 169, 172, 175, 178
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 2 cut(s) 383, 470
MnlI CCTC 8 cut(s) 15, 131, 275, 322, 445, 496, 514, 517
MseI TTAA 2 cut(s) 459, 477
MspCI CTTAAG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 178, 441
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 41
NspI RCATGY 1 cut(s) 441
PctI GAATGC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 2 cut(s) 72, 424
Psp124BI GAGCTC 1 cut(s) 467
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 3 cut(s) 7, 61, 347
RsaI GTAC 2 cut(s) 236, 428
RsaNI GTAC 2 cut(s) 235, 427
SacI GAGCTC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 459, 477
SatI GCNGC 2 cut(s) 71, 423
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 3 cut(s) 7, 61, 347
ScaI AGTACT 1 cut(s) 236
SduI GDGCHC 1 cut(s) 467
SetI ASST 6 cut(s) 17, 123, 375, 450, 467, 483
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 374
SinI GGWCC 2 cut(s) 61, 347
SmlI CTYRAG 2 cut(s) 320, 458
SmoI CTYRAG 2 cut(s) 320, 458
Sse9I AATT 2 cut(s) 383, 470
SsiI CCGC 1 cut(s) 513
SspMI CTAG 2 cut(s) 449, 535
SstI GAGCTC 1 cut(s) 467
TaaI ACNGT 2 cut(s) 65, 378
TaiI ACGT 2 cut(s) 17, 483
TasI AATT 2 cut(s) 383, 470
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 2 cut(s) 459, 477
Tru9I TTAA 2 cut(s) 459, 477
TscAI CASTG 3 cut(s) 54, 253, 448
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 70, 422
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 54, 253, 448
Vha464I CTTAAG 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 61, 347
XceI RCATGY 1 cut(s) 441
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XspI CTAG 2 cut(s) 449, 535
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.