Rmu_ssc0000116.1_g000067

transcription coactivator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000116.1
OG0015361
Physical Location & Seq
Reverse (-)
345108 .. 351019
5912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000116.1_g000067.1.cds

Sequence Viewer

Length: 816 bp
atgtcaactgcatatcaccggacagatctgtaccagcgtcgccttgaagaggtacctgtgacaaacttctttggatcagtcatggaaacaatacatactgattcagcttataaagccctttcaaggagaagttacagcagagctgaaatcaatacgccctttgatcaatcagccaatgccgataaaagaactttggcaaattcaaatggtcaggatcaattcagtgacctgaaaaaagaggatcaacaaggtgctttcagacatttgtggaatacttttaatgacaaggttggaaaaattgaagatgtggattcatttgtgcagtacgtacggtttgctagccatggttccactattgctacttcccacatggctatcgcgcagcaacacagagaaaacaacaacaacaacaacaaggaggaggagcaggaggaggagaaggagatcaccatgatgcactacaaggaggaaaaagaggcaaagaaagaagctttcaggaagtacttggaatccagtggagttcttgatgccctcaccaaagttttggttgcattgtacgagcagaatgacaagccttcctctgcgctcgagtttgttcaacaaaagttaggaggtccatctttgtccgagtatgaaaagctacaggctgaattatcagatctgcagatgaagtataaccaacttttcacagcttaccaagagaccagtgcagagttggaggaacttaagaggtcacaagcgcatacaacacataatgaggcaccaggttctaccaaggagaccactgctgcggaggcccaaaaggaaaagttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.07

Weight (kDa)

5.39

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14045 AT2G14045 AT2G14045 AT2G14045
fragaria_vesca FvH4_6g02371
malus_domestica MD12G1244800.v1.1
prunus_persica Prupe.6G347400_v2.0.a1
pyrus_communis pycom12g22460
rosa_chinensis RchiOBHm_Chr3g0450141
rosa_laevigata RLG00000025752
rosa_multiflora Rmu_ssc0000116.1_g000067
rosa_samantha Rh3AG025100 Rh3BG025700 Rh3CG024600 Rh3DG025700
rosa_wichuraiana Rw3G002010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
Acc65I GGTACC 1 cut(s) 52
AccB1I GGYRCC 2 cut(s) 52, 760
AccII CGCG 1 cut(s) 380
AciI CCGC 1 cut(s) 791
AclWI GGATC 3 cut(s) 82, 222, 249
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 6 cut(s) 32, 54, 326, 330, 503, 557
AfiI CCNNNNNNNGG 2 cut(s) 49, 123
AflII CTTAAG 1 cut(s) 725
AgsI TTSAA 5 cut(s) 47, 123, 204, 302, 599
AjnI CCWGG 1 cut(s) 763
AluBI AGCT 5 cut(s) 107, 143, 491, 640, 692
AluI AGCT 5 cut(s) 107, 143, 491, 640, 692
Alw26I GTCTC 2 cut(s) 695, 773
AlwI GGATC 3 cut(s) 82, 222, 249
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 1 cut(s) 795
ApeKI GCWGC 2 cut(s) 382, 788
ApoI RAATTY 1 cut(s) 199
Asp718I GGTACC 1 cut(s) 52
AspLEI GCGC 3 cut(s) 382, 586, 742
AspS9I GGNCC 2 cut(s) 614, 796
AsuHPI GGTGA 3 cut(s) 8, 439, 526
AsuNHI GCTAGC 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 1 cut(s) 614
BanI GGYRCC 2 cut(s) 52, 760
BbvI GCAGC 2 cut(s) 394, 775
BccI CCATC 1 cut(s) 625
BciT130I CCWGG 1 cut(s) 765
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 2 cut(s) 695, 773
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 2 cut(s) 641, 662
BfrI CTTAAG 1 cut(s) 725
BglII AGATCT 2 cut(s) 25, 658
BisI GCNGC 2 cut(s) 383, 789
BlsI GCNGC 2 cut(s) 384, 790
BmcAI AGTACT 1 cut(s) 503
Bme1390I CCNGG 1 cut(s) 765
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 2 cut(s) 614, 796
BmiI GGNNCC 3 cut(s) 54, 349, 762
BmrFI CCNGG 1 cut(s) 765
BmsI GCATC 2 cut(s) 444, 517
BmtI GCTAGC 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 328
BsaI GGTCTC 2 cut(s) 695, 773
BsaJI CCNNGG 2 cut(s) 343, 774
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 123
Bse1I ACTGG 2 cut(s) 513, 705
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 2 cut(s) 343, 774
BseLI CCNNNNNNNGG 2 cut(s) 49, 123
BseNI ACTGG 2 cut(s) 513, 705
BseRI GAGGAG 4 cut(s) 434, 437, 446, 449
BseXI GCAGC 2 cut(s) 394, 775
BsgI GTGCAG 2 cut(s) 341, 729
Bsh1236I CGCG 1 cut(s) 380
BshFI GGCC 1 cut(s) 797
BshNI GGYRCC 2 cut(s) 52, 760
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 1 cut(s) 19
BsiWI CGTACG 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 49, 123
BsmAI GTCTC 2 cut(s) 695, 773
BsnI GGCC 1 cut(s) 797
Bso31I GGTCTC 2 cut(s) 695, 773
BsoBI CYCGRG 1 cut(s) 587
Bsp143I GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 1 cut(s) 791
BspANI GGCC 1 cut(s) 797
BspFNI CGCG 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 54, 349, 762
BspMAI CTGCAG 1 cut(s) 666
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 3 cut(s) 82, 222, 249
BspT107I GGYRCC 2 cut(s) 52, 760
BspTI CTTAAG 1 cut(s) 725
BspTNI GGTCTC 2 cut(s) 695, 773
BsrI ACTGG 2 cut(s) 513, 705
BssECI CCNNGG 2 cut(s) 343, 774
BssMI GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
BssT1I CCWWGG 2 cut(s) 343, 774
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 725
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 340
BstDSI CCRYGG 1 cut(s) 343
BstENI CCTNNNNNAGG 1 cut(s) 47
BstFNI CGCG 1 cut(s) 380
BstHHI GCGC 3 cut(s) 382, 586, 742
BstKTI GATC 7 cut(s) 28, 77, 166, 217, 244, 447, 661
BstMAI GTCTC 2 cut(s) 695, 773
BstMBI GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
BstMWI GCNNNNNNNGC 2 cut(s) 113, 794
BstNI CCWGG 1 cut(s) 765
BstSCI CCNGG 1 cut(s) 763
BstSFI CTRYAG 2 cut(s) 641, 662
BstSNI TACGTA 1 cut(s) 328
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 394, 775
BstX2I RGATCY 2 cut(s) 25, 658
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 2 cut(s) 25, 658
BsuRI GGCC 1 cut(s) 797
BtgI CCRYGG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 4 cut(s) 229, 520, 712, 783
Cac8I GCNNGC 1 cut(s) 340
CfoI GCGC 3 cut(s) 382, 586, 742
Cfr13I GGNCC 2 cut(s) 614, 796
CseI GACGC 1 cut(s) 26
CsiI ACCWGGT 1 cut(s) 763
Csp6I GTAC 6 cut(s) 31, 53, 325, 329, 502, 556
CviAII CATG 4 cut(s) 82, 344, 370, 451
CviQI GTAC 6 cut(s) 31, 53, 325, 329, 502, 556
DpnI GATC 7 cut(s) 27, 76, 165, 216, 243, 446, 660
DpnII GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco105I TACGTA 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 343, 774
Eco31I GGTCTC 2 cut(s) 695, 773
Eco47I GGWCC 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 763
EcoT14I CCWWGG 2 cut(s) 343, 774
ErhI CCWWGG 2 cut(s) 343, 774
FaeI CATG 4 cut(s) 85, 347, 373, 454
FatI CATG 4 cut(s) 81, 343, 369, 450
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 2 cut(s) 383, 789
Fsp4HI GCNGC 2 cut(s) 383, 789
FspBI CTAG 1 cut(s) 339
GlaI GCGC 3 cut(s) 381, 585, 741
GluI GCNGC 2 cut(s) 383, 789
HaeIII GGCC 1 cut(s) 797
HapII CCGG 1 cut(s) 19
HgaI GACGC 1 cut(s) 26
HhaI GCGC 3 cut(s) 382, 586, 742
Hin1II CATG 4 cut(s) 85, 347, 373, 454
Hin6I GCGC 3 cut(s) 380, 584, 740
HinP1I GCGC 3 cut(s) 380, 584, 740
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 3 cut(s) 101, 311, 509
HpaII CCGG 1 cut(s) 19
HphI GGTGA 3 cut(s) 8, 439, 526
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 260, 628, 658
Hpy188III TCNNGA 3 cut(s) 212, 496, 524
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 2 cut(s) 433, 585
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 6 cut(s) 11, 322, 457, 551, 664, 710
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 794
HpySE526I ACGT 1 cut(s) 327
Hsp92II CATG 4 cut(s) 85, 347, 373, 454
HspAI GCGC 3 cut(s) 380, 584, 740
KpnI GGTACC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 2 cut(s) 394, 775
LweI GCATC 2 cut(s) 444, 517
MabI ACCWGGT 1 cut(s) 763
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 4 cut(s) 58, 131, 224, 732
MalI GATC 7 cut(s) 27, 76, 165, 216, 243, 446, 660
MboI GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
MboII GAAGA 2 cut(s) 59, 314
MflI RGATCY 2 cut(s) 25, 658
MluCI AATT 4 cut(s) 199, 218, 297, 650
MmeI TCCRAC 2 cut(s) 271, 696
MseI TTAA 2 cut(s) 279, 726
MslI CAYNNNNRTG 1 cut(s) 452
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 765
MvaI CCWGG 1 cut(s) 765
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 113, 794
NcoI CCATGG 1 cut(s) 343
NdeII GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 4 cut(s) 85, 347, 373, 454
NlaIV GGNNCC 3 cut(s) 54, 349, 762
NmuCI GTSAC 3 cut(s) 58, 224, 732
PaeR7I CTCGAG 1 cut(s) 587
PfeI GAWTC 3 cut(s) 101, 311, 509
Pfl23II CGTACG 1 cut(s) 328
PkrI GCNGC 2 cut(s) 384, 790
Ppu21I YACGTR 1 cut(s) 328
PsiI TTATAA 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PspLI CGTACG 1 cut(s) 328
PspN4I GGNNCC 3 cut(s) 54, 349, 762
PspPI GGNCC 2 cut(s) 614, 796
PspXI VCTCGAGB 1 cut(s) 587
PstI CTGCAG 1 cut(s) 666
PsuI RGATCY 2 cut(s) 25, 658
RsaI GTAC 6 cut(s) 32, 54, 326, 330, 503, 557
RsaNI GTAC 6 cut(s) 31, 53, 325, 329, 502, 556
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 2 cut(s) 279, 726
SatI GCNGC 2 cut(s) 383, 789
Sau3AI GATC 7 cut(s) 25, 74, 163, 214, 241, 444, 658
Sau96I GGNCC 2 cut(s) 614, 796
ScaI AGTACT 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 765
SexAI ACCWGGT 1 cut(s) 763
SfaNI GCATC 2 cut(s) 444, 517
SfcI CTRYAG 2 cut(s) 641, 662
Sfr274I CTCGAG 1 cut(s) 587
SinI GGWCC 1 cut(s) 614
SlaI CTCGAG 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 587, 725
SmoI CTYRAG 2 cut(s) 587, 725
SnaBI TACGTA 1 cut(s) 328
Sse9I AATT 4 cut(s) 199, 218, 297, 650
SsiI CCGC 1 cut(s) 791
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 763
StyI CCWWGG 2 cut(s) 343, 774
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 588
TasI AATT 4 cut(s) 199, 218, 297, 650
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 3 cut(s) 101, 311, 509
Tru1I TTAA 2 cut(s) 279, 726
Tru9I TTAA 2 cut(s) 279, 726
TscAI CASTG 4 cut(s) 229, 520, 712, 790
TseFI GTSAC 3 cut(s) 58, 224, 732
TseI GCWGC 2 cut(s) 382, 788
Tsp45I GTSAC 3 cut(s) 58, 224, 732
TspDTI ATGAA 3 cut(s) 303, 648, 683
TspRI CASTG 4 cut(s) 229, 520, 712, 790
Vha464I CTTAAG 1 cut(s) 725
VpaK11BI GGWCC 1 cut(s) 614
XagI CCTNNNNNAGG 1 cut(s) 47
XapI RAATTY 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 712
XhoI CTCGAG 1 cut(s) 587
XspI CTAG 1 cut(s) 339
ZrmI AGTACT 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.