Prupe.6G347400_v2.0.a1

transcription coactivator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015361
Physical Location & Seq
Forward (+)
29730086 .. 29732825
2740 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G347400.1

Sequence Viewer

Length: 363 bp
ATGATGCACTACAAAGAGGAAAAAGAGGCAAAGAAAGAAGCTTTTAGGAAGTACTTAGAATCCAGTGGAGTTCTTGATGCCCTCACCAAAGTTCTGGTTGCGTTATATGAGCAGAATGACAAACCTTCCTCTGCGCTTGAGTTTGTTCAACAAAAGTTAGGGGGTCCATCTGTGTCAGAATATGAAAAGGTCCAGGCTGAATTATCAGAGTTGCAGAAAAAGTATAACACACTTTTGGCAGCACACCAAGAAACCTGCTCTGAGCTAGAGGGACTTAAGAGCTCACAAGTACCTAACGTGGCACCAGTTTCTATCAAAGACAAAGAGACCACTGATGAGGAGGCCCTAAAGGAAAAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.53

Weight (kDa)

5.16

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14045 AT2G14045 AT2G14045 AT2G14045
fragaria_vesca FvH4_6g02371
malus_domestica MD12G1244800.v1.1
prunus_persica Prupe.6G347400_v2.0.a1
pyrus_communis pycom12g22460
rosa_chinensis RchiOBHm_Chr3g0450141
rosa_laevigata RLG00000025752
rosa_multiflora Rmu_ssc0000116.1_g000067
rosa_samantha Rh3AG025100 Rh3BG025700 Rh3CG024600 Rh3DG025700
rosa_wichuraiana Rw3G002010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 301
AfaI GTAC 2 cut(s) 53, 291
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 3 cut(s) 41, 265, 282
AluI AGCT 3 cut(s) 41, 265, 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 320
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 164, 190, 343
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 164, 190
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 175
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 266
BfrI CTTAAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 263
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmcAI AGTACT 1 cut(s) 53
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 2 cut(s) 164, 190
BmgT120I GGNCC 3 cut(s) 164, 190, 343
BmiI GGNNCC 2 cut(s) 165, 303
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 63, 305
BseBI CCWGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 2 cut(s) 63, 305
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 251
BshFI GGCC 1 cut(s) 344
BshNI GGYRCC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 284
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 1 cut(s) 344
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 284
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 165, 303
BspMI ACCTGC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 301
BspTI CTTAAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 320
BsrI ACTGG 2 cut(s) 63, 305
Bst2UI CCWGG 1 cut(s) 194
BstAFI CTTAAG 1 cut(s) 275
BstDEI CTNAG 2 cut(s) 55, 261
BstHHI GCGC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 320
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 344
BtsIMutI CAGTG 2 cut(s) 70, 330
BveI ACCTGC 1 cut(s) 263
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 3 cut(s) 164, 190, 343
Csp6I GTAC 2 cut(s) 52, 290
CviJI RGCY 5 cut(s) 41, 197, 265, 282, 344
CviKI_1 RGCY 5 cut(s) 41, 197, 265, 282, 344
CviQI GTAC 2 cut(s) 52, 290
DdeI CTNAG 2 cut(s) 55, 261
Ecl136II GAGCTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 164, 190
Eco53kI GAGCTC 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 284
FaiI YATR 4 cut(s) 106, 108, 183, 225
FaqI GGGAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 266
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 344
HhaI GCGC 1 cut(s) 136
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 178, 208, 262
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 135
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 2 cut(s) 7, 214
HpyF3I CTNAG 2 cut(s) 55, 261
HpySE526I ACGT 1 cut(s) 297
HspAI GCGC 1 cut(s) 134
LpnPI CCDG 6 cut(s) 76, 80, 179, 206, 268, 318
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 67
MaeI CTAG 1 cut(s) 266
MaeII ACGT 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 1 cut(s) 200
MnlI CCTC 7 cut(s) 10, 19, 92, 139, 262, 331, 334
MseI TTAA 1 cut(s) 276
MspCI CTTAAG 1 cut(s) 275
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
NlaIV GGNNCC 2 cut(s) 165, 303
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 165, 303
PspPI GGNCC 3 cut(s) 164, 190, 343
RsaI GTAC 2 cut(s) 53, 291
RsaNI GTAC 2 cut(s) 52, 290
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 1 cut(s) 240
Sau96I GGNCC 3 cut(s) 164, 190, 343
ScaI AGTACT 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 284
SetI ASST 8 cut(s) 43, 127, 192, 257, 267, 284, 295, 300
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 2 cut(s) 164, 190
SmlI CTYRAG 2 cut(s) 137, 275
SmoI CTYRAG 2 cut(s) 137, 275
Sse9I AATT 1 cut(s) 200
SspMI CTAG 1 cut(s) 266
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 300
TasI AATT 1 cut(s) 200
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TscAI CASTG 2 cut(s) 70, 337
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 2 cut(s) 70, 337
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 164, 190
XspI CTAG 1 cut(s) 266
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.