MD12G1244800.v1.1

transcription coactivator activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015361
Physical Location & Seq
Forward (+)
31549780 .. 31551913
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1244800.v1.1.491

Sequence Viewer

Length: 363 bp
ATGTTTCACTACAAAGAGGAAAAAGAAGCAAAGAAGGAAGCATTCAGGAAGTACTTAGAATCCAGTGGAGTTCTTGATGCCCTCACCAAAGTTCTGGTTGCTTTGTATGAGCAGAATGAGAAGCCTTCCTCTGCACTTGAGTTTGTTCAACAAAAGTTAGGGGGTCCATCTGTGTCTGATTACGAAAAGCTACAGGCTGAATTGTCCGAGTTGCAGAAAAAGTATAGCACACTTTCAGCAGCATACCAAGAAACATGCACTGAGCTAGAGGGACTTAAGAGCTCACAATTACTTAACGTGGCCTCGCTTTCTATCAAAGACAAAGAGACCGCAGGCGAGGAGGCCCTAAAGGAGAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.46

Weight (kDa)

5.16

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14045 AT2G14045 AT2G14045 AT2G14045
fragaria_vesca FvH4_6g02371
malus_domestica MD12G1244800.v1.1
prunus_persica Prupe.6G347400_v2.0.a1
pyrus_communis pycom12g22460
rosa_chinensis RchiOBHm_Chr3g0450141
rosa_laevigata RLG00000025752
rosa_multiflora Rmu_ssc0000116.1_g000067
rosa_samantha Rh3AG025100 Rh3BG025700 Rh3CG024600 Rh3DG025700
rosa_wichuraiana Rw3G002010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 330
AfaI GTAC 1 cut(s) 53
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 1 cut(s) 149
AluBI AGCT 3 cut(s) 190, 265, 282
AluI AGCT 3 cut(s) 190, 265, 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 320
AoxI GGCC 2 cut(s) 300, 342
ApeKI GCWGC 1 cut(s) 239
AspS9I GGNCC 2 cut(s) 164, 343
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 2 cut(s) 266, 361
BfmI CTRYAG 1 cut(s) 191
BfrI CTTAAG 1 cut(s) 275
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmcAI AGTACT 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 164, 343
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 2 cut(s) 302, 344
BsiHKAI GWGCWC 1 cut(s) 284
BslFI GGGAC 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 2 cut(s) 302, 344
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 284
BspACI CCGC 1 cut(s) 330
BspANI GGCC 2 cut(s) 302, 344
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 165
BspTI CTTAAG 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 2 cut(s) 55, 261
BstMAI GTCTC 1 cut(s) 320
BstNSI RCATGY 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 191
BstV1I GCAGC 1 cut(s) 251
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 2 cut(s) 302, 344
BtsIMutI CAGTG 2 cut(s) 70, 258
Cac8I GCNNGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 164, 343
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 255
CviJI RGCY 7 cut(s) 124, 190, 197, 265, 282, 302, 344
CviKI_1 RGCY 7 cut(s) 124, 190, 197, 265, 282, 302, 344
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 55, 261
Ecl136II GAGCTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 164
Eco53kI GAGCTC 1 cut(s) 282
EcoICRI GAGCTC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 284
FaeI CATG 1 cut(s) 258
FaiI YATR 4 cut(s) 108, 225, 244, 256
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 2 cut(s) 266, 361
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 2 cut(s) 302, 344
Hin1II CATG 1 cut(s) 258
HinfI GANTC 1 cut(s) 59
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 178, 208
Hpy188III TCNNGA 2 cut(s) 46, 74
HpyAV CCTTC 2 cut(s) 28, 135
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 134, 214, 258
HpyF3I CTNAG 2 cut(s) 55, 261
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 1 cut(s) 258
LpnPI CCDG 5 cut(s) 31, 76, 80, 179, 318
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 67
MaeI CTAG 2 cut(s) 266, 361
MaeII ACGT 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 2 cut(s) 200, 287
MnlI CCTC 7 cut(s) 10, 92, 139, 262, 313, 331, 334
MseI TTAA 2 cut(s) 276, 294
MspCI CTTAAG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 41
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 165
NspI RCATGY 1 cut(s) 258
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 164, 343
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SacI GAGCTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 276, 294
SatI GCNGC 1 cut(s) 240
Sau96I GGNCC 2 cut(s) 164, 343
ScaI AGTACT 1 cut(s) 53
SduI GDGCHC 1 cut(s) 284
SetI ASST 4 cut(s) 192, 267, 284, 300
SfaNI GCATC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 191
SinI GGWCC 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 137, 275
SmoI CTYRAG 2 cut(s) 137, 275
Sse9I AATT 2 cut(s) 200, 287
SsiI CCGC 1 cut(s) 330
SspMI CTAG 2 cut(s) 266, 361
SstI GAGCTC 1 cut(s) 284
TaiI ACGT 1 cut(s) 300
TasI AATT 2 cut(s) 200, 287
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 276, 294
Tru9I TTAA 2 cut(s) 276, 294
TscAI CASTG 2 cut(s) 70, 265
TseI GCWGC 1 cut(s) 239
TspRI CASTG 2 cut(s) 70, 265
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 164
XceI RCATGY 1 cut(s) 258
XspI CTAG 2 cut(s) 266, 361
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.